Rmu_sc0002551.1_g000039

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002551.1
OG0000129
Physical Location & Seq
Forward (+)
169186 .. 175489
6304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002551.1_g000039.1.cds

Sequence Viewer

Length: 4365 bp
atgactaccaaaatagatcttccttcttcttcttgtcctccgcttccttctccatttcttaaattgacatacgatgtgttcctcagtttcagaggtacagatacccgcacaaatttcacagaccatctttatgccgctctcaaacagaaaggaatatacacatttagagatgatgaagaacttaacagaggggaatcaattggtccaaatctcttgaaagcaattcaagagtcaagatatgtaattgtggtgttttctcagaactacgccgattcttcgtggtgtttgaatgagcttgcaaaagtagctgaatgcaggagagccatgggacaaacagtccttccagtgttctaccatgttgatccatctgatgtacgaagacaaactggggaacactttgggaaagcatttgagaagcatcaagagcggtttggaggcaatcctgacaaattgcagaggtggaaagacgctcttgctgaagtaggcaacctctctggatggcatctgaaagatgggtacgaatccaaagtcattcacgaaattgttgaaaagattttcaccgagttaaatcaaataatcacaatatctgagcgtttacttgggatggattctcacctgaatgaaatgctttcgtacttggacattgggtgtcctgatgttcgtatcatagggatttgtggtatgggtggtatcggtaagacaactattgcacaagtggtttttgaaagggtacaggctcagtttgaaggttgcagctttcttgagaatgttagagaggtaactgaaaagcaaggtgcagttcatttacaagagcaacttctttcgaatttgctgaaatgtagtgtaaatgtacagaacactaaaacgggaaaaaagataatgaggcagagactaagtactaaaacggttcttatcattcttgatgatgtggacaaagaaaaacaattggaagcattgtgtgatagggaatcggttggtccaggcagtagaatcatcataacttgtagagatgaacatttgctcagtgcagttgaaggagacaaagtatataaggtgaactcattaactgatgctgaagctcttcagcttttcagtatgaaagccttcaagaaagaccagctggttggaaaagaaattctgaagctatccaaagaattgttgaaatatgctaatggccttccactagctattgaagttttgggttctttagttaagggtagaggggtagagttatggtcaagtgtattggaaagacttgaagaaagtcctaataaagaaattagtaatgttctcaaggttagttttgatggattagaaccaagggaacagaaaatttttttggacattgcatgtttccttaaaggggtgaacatagatcgtgtaagaagaatactacagggtagtaatgcccactgtccagactttgatatacaggttctcctggacaaatctttggtaactctatttggatcaaaattgtggatgcatgatttgatacaagaaatgggtcgggaagttgttcttcaagaatgccgtgaagagcctggaaaacgtagcaggttgtggcttccaaatgagattatccatgtacttgatcggagtaaggcgacgagtgcagttcaaagcgtattcctcggtccaacaaaagacgatgttgttcactcaattgataatgccttctcgaagatggacagattgagattgctcaagatttggaatgtgaagttttccggaaacatcacatatctttctaatgaattacaatatctggaatggcatcaatgtcctttggattctttcccgtcagactttcaaccggataaacttgttgaagttcacatgtatcttagccgcatcaaacaactatggaggggaaaaaaaggatggagaatgctacggcttattgatctgagtggttcacaatacttgatgtcgactccagacttcactgaggttcctgatcttgaaacgttggtgcttcaaaattgtacaagcttggtggaggttcacccatctcttggatttctgaagaaacttgtctctttgaatatgacatattgcgagtctattgagagcattccacctttcactgccctggaatcccttcaaatattgaggctttcattctgttcaggactgaagaagtttccagaaattgaaggaaatatgaaaagcttgctggagcttcatttggatgggaccagcattgaggaattgcctccatcaattgaacgcttgactggtcttaccatgttgaatctagcagactgtaaaaaccttttgcatcttcccaataccattgggtgcttgacatctttgaaaagtctcgatctaacaggttgctccaaaattgatgagatacctgagaatctgaatggtataaaatgtctggagatgctttacattggtggaacttccataagggagttatctttcattgtaggcatgaagaatctacagtctctatcctgccgaggatgtgaaagtctagtgtcagaatcatgcaagggtctggcttcgttatcgagtttgatagagctagacttgagttattgcaatctgatggatggagcaattctcaatgattttagcagcctaatctccttggaattgttagatttaagtggtaattgctttgtgcgattacctgaaagtatctctcaactctcaaaacttgagactctgcgcttgaataattgcaaacagcttcaattgctgcccaacaagcttccgtttagtcttcgaaacgtgaatgcacaagattgtacttcactgacggattacccaaatcaaatcaaagtattgaattcatgggagtcgggagttactactgttaattccctcaattcttcagcagttaaagtctcacaaagtttttcaagtactgggggtgggggggaacttgtacaagtgtgtatgacatataatcatactgaggggaaacaagttgatcatttgccagtgacagctgaaccgattctaaaacaaacgtcttccaggtcaacttacatgaccgtaggtgctggagatgaaattccagagtggttcaacactacatctaccaggaatcccatatcaatctcgatacctcaaaatctgaccgatgatgatgagtggaacggatttgccgcgtgtgctatattctcagtcaaggggcatactgctctctcccttattgaaccgcatcctgatttttctaattactcgtatcaaatcacattggaaacggatgttgtgcgtctggaaccatttgtgttgggagtggagtcagtggactttggcagctttggattaagttctcatctgcttgtgattttcggtatatctaggttgcatattccacagagggggttaaatcaatcaactgtggtgagagctatatttgaaaccactaatccatccatggtggtccagaaatgtggaatccgtgtactctatgagcaagatgctggttggttttacaacataaactacggtcctacgatttgtctgaatgatgttgaggacgccgcctctgtattggactctgcgtgtcggaatcatgttgtggacgccgcctctgtacgggaggagaaattcattccacccttggaagaagaatacacacttgagctgagaaagaaccttgagtctgttcttccgagattccttgaggcactaaacagttatcatgtaacgttcgaatttaacctcagaggaagcccagcgtggtttccggaatttgtccttgatacggggtcaaattcgaacatagggccaatcaagctgcctcaaaatctacacaagagcaagaagtggatgggatttgcaatatacgcatcactggaagtggggcagacaatgaaagaggacaactattgggtatttgttacactatttggtacgaatgtggcccaaaaacttaagcacgtcaggccattgtcagaaaaacatcatcaactatttgttacttacataccgcgggcacagatgtccgaagtgttgttcactcagacattaaaaactgcaatgtccattgtggtcgatagccctcatgtaaaggttcaaagatatgggttccgcattgtgtaccaagaagatatacaagggtttgctgacactattatccggtgcatgcagagggcagattctcttgaatcccaagaagatatacaagggtttgctgatactattatccggtgcatgcagagggcagattctcttgaatctcacgataagttggtggtagaagactggataaagttgatacgattgcaaggtgcccatttagagagaatgacagaacgggattcccgaaccccacgggaaaaatactttgaattgcactcacaaaaatatagaaatcaggggcggatccaggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1454

Amino Acids

164.1

Weight (kDa)

5.75

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1548
AccB1I GGYRCC 1 cut(s) 4259
AccB7I CCANNNNNTGG 1 cut(s) 2018
AccBSI CCGCTC 2 cut(s) 137, 427
AccI GTMKAC 1 cut(s) 1934
AccII CGCG 2 cut(s) 3131, 3961
AccIII TCCGGA 2 cut(s) 1730, 3715
AclI AACGTT 2 cut(s) 1970, 3677
AclWI GGATC 4 cut(s) 356, 1477, 4348, 4361
AcuI CTGAAG 7 cut(s) 498, 1067, 1095, 1160, 2048, 2159, 2835
AcyI GRCGYC 2 cut(s) 3507, 3552
AfiI CCNNNNNNNGG 5 cut(s) 1363, 2018, 3347, 3564, 3733
AflII CTTAAG 1 cut(s) 3902
AflIII ACRYGT 1 cut(s) 1839
AhdI GACNNNNNGTC 1 cut(s) 335
AjiI CACGTC 1 cut(s) 3910
AjnI CCWGG 7 cut(s) 979, 1440, 1543, 2094, 2996, 3062, 4356
AjuI GAANNNNNNNTTGG 2 cut(s) 1322, 1354
Alw26I GTCTC 7 cut(s) 883, 1032, 2044, 2330, 2466, 2672, 2869
AlwI GGATC 4 cut(s) 356, 1477, 4348, 4361
Aor13HI TCCGGA 2 cut(s) 1730, 3715
AoxI GGCC 4 cut(s) 1174, 3755, 3891, 3914
ApeKI GCWGC 5 cut(s) 753, 2592, 2716, 3282, 3766
ArsI GACNNNNNNTTYG 2 cut(s) 513, 545
Asp700I GAANNNNTTC 5 cut(s) 1080, 1103, 1518, 2103, 2976
AspLEI GCGC 1 cut(s) 2688
AspS9I GGNCC 8 cut(s) 203, 977, 1637, 2199, 3409, 3476, 3755, 3892
AsuHPI GGTGA 6 cut(s) 550, 605, 1066, 1378, 2000, 3382
AsuII TTCGAA 4 cut(s) 824, 2743, 3681, 3746
AvaII GGWCC 6 cut(s) 203, 977, 1637, 2199, 3409, 3476
BaeGI GKGCMC 2 cut(s) 3967, 4264
BaeI ACNNNNGTAYC 2 cut(s) 3873, 3906
BamHI GGATCC 1 cut(s) 4353
BanI GGYRCC 1 cut(s) 4259
BbsI GAAGAC 4 cut(s) 385, 2732, 2985, 4236
BbvI GCAGC 5 cut(s) 765, 2604, 2703, 3294, 3753
BceAI ACGGC 2 cut(s) 1518, 1913
BciT130I CCWGG 7 cut(s) 981, 1442, 1545, 2096, 2998, 3064, 4358
BclI TGATCA 1 cut(s) 2950
BcoDI GTCTC 7 cut(s) 883, 1032, 2044, 2330, 2466, 2672, 2869
BfaI CTAG 5 cut(s) 1184, 2261, 2489, 2540, 3327
BfmI CTRYAG 2 cut(s) 1394, 2456
BfrI CTTAAG 1 cut(s) 3902
BfuAI ACCTGC 1 cut(s) 1548
BglII AGATCT 1 cut(s) 16
BmcAI AGTACT 2 cut(s) 898, 2884
Bme1390I CCNGG 7 cut(s) 981, 1442, 1545, 2096, 2998, 3064, 4358
Bme18I GGWCC 6 cut(s) 203, 977, 1637, 2199, 3409, 3476
BmeRI GACNNNNNGTC 1 cut(s) 335
BmgBI CACGTC 1 cut(s) 3910
BmgT120I GGNCC 8 cut(s) 203, 977, 1637, 2199, 3409, 3476, 3755, 3892
BmiI GGNNCC 6 cut(s) 1956, 2200, 3246, 4058, 4261, 4355
BmrFI CCNGG 7 cut(s) 981, 1442, 1545, 2096, 2998, 3064, 4358
BmrI ACTGGG 2 cut(s) 396, 2895
BmuI ACTGGG 2 cut(s) 396, 2895
BpiI GAAGAC 4 cut(s) 385, 2732, 2985, 4236
BplI GAGNNNNNCTC 2 cut(s) 2562, 2594
BpmI CTGGAG 4 cut(s) 1923, 2201, 2411, 3045
Bpu14I TTCGAA 4 cut(s) 824, 2743, 3681, 3746
BpuEI CTTGAG 8 cut(s) 782, 1277, 1691, 2566, 2696, 3629, 3647, 3671
BsaHI GRCGYC 2 cut(s) 3507, 3552
BsaWI WCCGGW 5 cut(s) 1730, 1816, 3715, 4107, 4176
BsaXI ACNNNNNCTCC 4 cut(s) 1029, 1059, 1422, 1452
Bsc4I CCNNNNNNNGG 5 cut(s) 1363, 2018, 3347, 3564, 3733
Bse1I ACTGG 7 cut(s) 344, 391, 2245, 2890, 2960, 3828, 4238
Bse3DI GCAATG 2 cut(s) 1344, 4014
BseAI TCCGGA 2 cut(s) 1730, 3715
BseBI CCWGG 7 cut(s) 981, 1442, 1545, 2096, 2998, 3064, 4358
BseLI CCNNNNNNNGG 5 cut(s) 1363, 2018, 3347, 3564, 3733
BseMI GCAATG 2 cut(s) 1344, 4014
BseNI ACTGG 7 cut(s) 344, 391, 2245, 2890, 2960, 3828, 4238
BseRI GAGGAG 1 cut(s) 3584
BseSI GKGCMC 2 cut(s) 3967, 4264
BseXI GCAGC 5 cut(s) 765, 2604, 2703, 3294, 3753
BseYI CCCAGC 1 cut(s) 3703
BsgI GTGCAG 3 cut(s) 816, 1047, 1635
Bsh1236I CGCG 2 cut(s) 3131, 3961
BshFI GGCC 4 cut(s) 1176, 3757, 3893, 3916
BshNI GGYRCC 1 cut(s) 4259
BsiSI CCGG 5 cut(s) 1731, 1817, 3716, 4108, 4177
BslFI GGGAC 2 cut(s) 342, 2212
BslI CCNNNNNNNGG 5 cut(s) 1363, 2018, 3347, 3564, 3733
BsmAI GTCTC 7 cut(s) 883, 1032, 2044, 2330, 2466, 2672, 2869
BsmFI GGGAC 2 cut(s) 342, 2212
BsmI GAATGC 5 cut(s) 317, 1535, 1896, 2076, 2758
BsnI GGCC 4 cut(s) 1176, 3757, 3893, 3916
Bsp119I TTCGAA 4 cut(s) 824, 2743, 3681, 3746
Bsp1286I GDGCHC 2 cut(s) 3967, 4264
Bsp13I TCCGGA 2 cut(s) 1730, 3715
Bsp1407I TGTACA 3 cut(s) 850, 1988, 2905
Bsp19I CCATGG 2 cut(s) 324, 3402
BspANI GGCC 4 cut(s) 1176, 3757, 3893, 3916
BspEI TCCGGA 2 cut(s) 1730, 3715
BspFNI CGCG 2 cut(s) 3131, 3961
BspLI GGNNCC 6 cut(s) 1956, 2200, 3246, 4058, 4261, 4355
BspMI ACCTGC 1 cut(s) 1548
BspPI GGATC 4 cut(s) 356, 1477, 4348, 4361
BspQI GCTCTTC 2 cut(s) 1086, 1533
BspT104I TTCGAA 4 cut(s) 824, 2743, 3681, 3746
BspT107I GGYRCC 1 cut(s) 4259
BspTI CTTAAG 1 cut(s) 3902
BsrBI CCGCTC 2 cut(s) 137, 427
BsrDI GCAATG 2 cut(s) 1344, 4014
BsrGI TGTACA 3 cut(s) 850, 1988, 2905
BsrI ACTGG 7 cut(s) 344, 391, 2245, 2890, 2960, 3828, 4238
BssNI GRCGYC 2 cut(s) 3507, 3552
BssT1I CCWWGG 5 cut(s) 324, 1319, 2604, 3402, 3588
Bst2UI CCWGG 7 cut(s) 981, 1442, 1545, 2096, 2998, 3064, 4358
Bst6I CTCTTC 2 cut(s) 1086, 1533
BstACI GRCGYC 2 cut(s) 3507, 3552
BstAFI CTTAAG 1 cut(s) 3902
BstAUI TGTACA 3 cut(s) 850, 1988, 2905
BstBI TTCGAA 4 cut(s) 824, 2743, 3681, 3746
BstC8I GCNNGC 5 cut(s) 297, 2177, 3963, 4115, 4184
BstDSI CCRYGG 4 cut(s) 324, 3402, 3959, 4301
BstFNI CGCG 2 cut(s) 3131, 3961
BstHHI GCGC 1 cut(s) 2688
BstMAI GTCTC 7 cut(s) 883, 1032, 2044, 2330, 2466, 2672, 2869
BstMWI GCNNNNNNNGC 9 cut(s) 305, 424, 1613, 2713, 2725, 3134, 3763, 3815, 3913
BstNI CCWGG 7 cut(s) 981, 1442, 1545, 2096, 2998, 3064, 4358
BstNSI RCATGY 4 cut(s) 1353, 1843, 4117, 4186
BstSCI CCNGG 7 cut(s) 979, 1440, 1543, 2094, 2996, 3062, 4356
BstSFI CTRYAG 2 cut(s) 1394, 2456
BstSLI GKGCMC 2 cut(s) 3967, 4264
BstUI CGCG 2 cut(s) 3131, 3961
BstV1I GCAGC 5 cut(s) 765, 2604, 2703, 3294, 3753
BstV2I GAAGAC 4 cut(s) 385, 2732, 2985, 4236
BstX2I RGATCY 2 cut(s) 16, 4353
BstXI CCANNNNNNTGG 2 cut(s) 1124, 3419
BstYI RGATCY 2 cut(s) 16, 4353
BsuRI GGCC 4 cut(s) 1176, 3757, 3893, 3916
BtgI CCRYGG 4 cut(s) 324, 3402, 3959, 4301
BtrI CACGTC 1 cut(s) 3910
BtsI GCAGTG 1 cut(s) 2088
BtsIMutI CAGTG 9 cut(s) 351, 1030, 1411, 1947, 2088, 2771, 2967, 3276, 3821
BveI ACCTGC 1 cut(s) 1548
Cac8I GCNNGC 5 cut(s) 297, 2177, 3963, 4115, 4184
CfoI GCGC 1 cut(s) 2688
Cfr13I GGNCC 8 cut(s) 203, 977, 1637, 2199, 3409, 3476, 3755, 3892
Cfr42I CCGCGG 1 cut(s) 3962
CseI GACGC 4 cut(s) 476, 3227, 3515, 3560
CspCI CAANNNNNGTGG 2 cut(s) 1980, 2015
DriI GACNNNNNGTC 1 cut(s) 335
Eam1104I CTCTTC 2 cut(s) 1086, 1533
Eam1105I GACNNNNNGTC 1 cut(s) 335
EarI CTCTTC 2 cut(s) 1086, 1533
Eco130I CCWWGG 5 cut(s) 324, 1319, 2604, 3402, 3588
Eco47I GGWCC 6 cut(s) 203, 977, 1637, 2199, 3409, 3476
Eco57I CTGAAG 7 cut(s) 498, 1067, 1095, 1160, 2048, 2159, 2835
EcoRI GAATTC 1 cut(s) 2806
EcoRII CCWGG 7 cut(s) 979, 1440, 1543, 2094, 2996, 3062, 4356
EcoT14I CCWWGG 5 cut(s) 324, 1319, 2604, 3402, 3588
EcoT22I ATGCAT 1 cut(s) 1488
ErhI CCWWGG 5 cut(s) 324, 1319, 2604, 3402, 3588
FalI AAGNNNNNCTT 6 cut(s) 456, 488, 801, 833, 1506, 1538
FaqI GGGAC 2 cut(s) 342, 2212
FauI CCCGC 2 cut(s) 113, 3954
FbaI TGATCA 1 cut(s) 2950
FblI GTMKAC 1 cut(s) 1934
FspBI CTAG 5 cut(s) 1184, 2261, 2489, 2540, 3327
GlaI GCGC 1 cut(s) 2687
GsaI CCCAGC 1 cut(s) 3707
GsuI CTGGAG 4 cut(s) 1923, 2201, 2411, 3045
HaeIII GGCC 4 cut(s) 1176, 3757, 3893, 3916
HapII CCGG 5 cut(s) 1731, 1817, 3716, 4108, 4177
HgaI GACGC 4 cut(s) 476, 3227, 3515, 3560
HhaI GCGC 1 cut(s) 2688
Hin1I GRCGYC 2 cut(s) 3507, 3552
Hin6I GCGC 1 cut(s) 2686
HinP1I GCGC 1 cut(s) 2686
HincII GTYRAC 2 cut(s) 1935, 3003
HindII GTYRAC 2 cut(s) 1935, 3003
HindIII AAGCTT 3 cut(s) 1993, 2173, 2726
HpaII CCGG 5 cut(s) 1731, 1817, 3716, 4108, 4177
HphI GGTGA 6 cut(s) 550, 605, 1066, 1378, 2000, 3382
Hpy99I CGWCG 1 cut(s) 1612
HpyCH4IV ACGT 6 cut(s) 1552, 1970, 2748, 2990, 3677, 3909
HpyF10VI GCNNNNNNNGC 9 cut(s) 305, 424, 1613, 2713, 2725, 3134, 3763, 3815, 3913
HpySE526I ACGT 6 cut(s) 1552, 1970, 2748, 2990, 3677, 3909
Hsp92I GRCGYC 2 cut(s) 3507, 3552
HspAI GCGC 1 cut(s) 2686
Kpn2I TCCGGA 2 cut(s) 1730, 3715
Ksp22I TGATCA 1 cut(s) 2950
KspI CCGCGG 1 cut(s) 3962
LguI GCTCTTC 2 cut(s) 1086, 1533
LmnI GCTCC 3 cut(s) 2182, 2348, 2570
Lsp1109I GCAGC 5 cut(s) 765, 2604, 2703, 3294, 3753
MaeI CTAG 5 cut(s) 1184, 2261, 2489, 2540, 3327
MaeII ACGT 6 cut(s) 1552, 1970, 2748, 2990, 3677, 3909
MaeIII GTNAC 7 cut(s) 778, 1456, 2824, 2962, 3673, 3868, 3946
MbiI CCGCTC 2 cut(s) 137, 427
MfeI CAATTG 5 cut(s) 198, 944, 1665, 2226, 2711
MflI RGATCY 2 cut(s) 16, 4353
MhlI GDGCHC 2 cut(s) 3967, 4264
MlyI GAGTC 8 cut(s) 239, 1930, 2072, 2674, 2825, 3275, 3518, 3638
MmeI TCCRAC 3 cut(s) 1105, 1664, 3515
Mph1103I ATGCAT 1 cut(s) 1488
MroI TCCGGA 2 cut(s) 1730, 3715
MroXI GAANNNNTTC 5 cut(s) 1080, 1103, 1518, 2103, 2976
MslI CAYNNNNRTG 3 cut(s) 129, 618, 2193
MspA1I CMGCKG 3 cut(s) 1120, 2969, 3961
MspCI CTTAAG 1 cut(s) 3902
MspI CCGG 5 cut(s) 1731, 1817, 3716, 4108, 4177
MspR9I CCNGG 7 cut(s) 981, 1442, 1545, 2096, 2998, 3064, 4358
MunI CAATTG 5 cut(s) 198, 944, 1665, 2226, 2711
Mva1269I GAATGC 5 cut(s) 317, 1535, 1896, 2076, 2758
MvaI CCWGG 7 cut(s) 981, 1442, 1545, 2096, 2998, 3064, 4358
MvnI CGCG 2 cut(s) 3131, 3961
MwoI GCNNNNNNNGC 9 cut(s) 305, 424, 1613, 2713, 2725, 3134, 3763, 3815, 3913
NcoI CCATGG 2 cut(s) 324, 3402
NlaIV GGNNCC 6 cut(s) 1956, 2200, 3246, 4058, 4261, 4355
NmeAIII GCCGAG 1 cut(s) 2498
NmuCI GTSAC 1 cut(s) 2962
NsiI ATGCAT 1 cut(s) 1488
NspI RCATGY 4 cut(s) 1353, 1843, 4117, 4186
NspV TTCGAA 4 cut(s) 824, 2743, 3681, 3746
PaeI GCATGC 2 cut(s) 4117, 4186
PciI ACATGT 1 cut(s) 1839
PciSI GCTCTTC 2 cut(s) 1086, 1533
PcsI WCGNNNNNNNCGW 1 cut(s) 4291
PctI GAATGC 5 cut(s) 317, 1535, 1896, 2076, 2758
PdmI GAANNNNTTC 5 cut(s) 1080, 1103, 1518, 2103, 2976
PflMI CCANNNNNTGG 1 cut(s) 2018
PfoI TCCNGGA 2 cut(s) 1440, 4356
PleI GAGTC 8 cut(s) 238, 1930, 2071, 2674, 2824, 3274, 3518, 3637
PpsI GAGTC 8 cut(s) 238, 1930, 2071, 2674, 2824, 3274, 3518, 3637
PscI ACATGT 1 cut(s) 1839
Psp1406I AACGTT 2 cut(s) 1970, 3677
Psp6I CCWGG 7 cut(s) 979, 1440, 1543, 2094, 2996, 3062, 4356
PspFI CCCAGC 1 cut(s) 3703
PspGI CCWGG 7 cut(s) 979, 1440, 1543, 2094, 2996, 3062, 4356
PspN4I GGNNCC 6 cut(s) 1956, 2200, 3246, 4058, 4261, 4355
PspPI GGNCC 8 cut(s) 203, 977, 1637, 2199, 3409, 3476, 3755, 3892
PsuI RGATCY 2 cut(s) 16, 4353
PvuII CAGCTG 2 cut(s) 1120, 2969
RseI CAYNNNNRTG 3 cut(s) 129, 618, 2193
SacII CCGCGG 1 cut(s) 3962
SalI GTCGAC 1 cut(s) 1933
SapI GCTCTTC 2 cut(s) 1086, 1533
Sau96I GGNCC 8 cut(s) 203, 977, 1637, 2199, 3409, 3476, 3755, 3892
ScaI AGTACT 2 cut(s) 898, 2884
SchI GAGTC 8 cut(s) 239, 1930, 2072, 2674, 2825, 3275, 3518, 3638
ScrFI CCNGG 7 cut(s) 981, 1442, 1545, 2096, 2998, 3064, 4358
SduI GDGCHC 2 cut(s) 3967, 4264
SfcI CTRYAG 2 cut(s) 1394, 2456
Sfr303I CCGCGG 1 cut(s) 3962
SfuI TTCGAA 4 cut(s) 824, 2743, 3681, 3746
SgrBI CCGCGG 1 cut(s) 3962
SinI GGWCC 6 cut(s) 203, 977, 1637, 2199, 3409, 3476
SmiMI CAYNNNNRTG 3 cut(s) 129, 618, 2193
SmlI CTYRAG 9 cut(s) 761, 1292, 1706, 2545, 2675, 3608, 3626, 3650, 3902
SmoI CTYRAG 9 cut(s) 761, 1292, 1706, 2545, 2675, 3608, 3626, 3650, 3902
SphI GCATGC 2 cut(s) 4117, 4186
SspI AATATT 1 cut(s) 2112
SspMI CTAG 5 cut(s) 1184, 2261, 2489, 2540, 3327
StyD4I CCNGG 7 cut(s) 979, 1440, 1543, 2094, 2996, 3062, 4356
StyI CCWWGG 5 cut(s) 324, 1319, 2604, 3402, 3588
TaiI ACGT 6 cut(s) 1555, 1973, 2751, 2993, 3680, 3912
TaqII GACCGA 2 cut(s) 1625, 3116
TatI WGTACW 8 cut(s) 850, 896, 1588, 1988, 2765, 2882, 2905, 3430
TauI GCSGC 5 cut(s) 137, 1854, 3131, 3512, 3557
TscAI CASTG 9 cut(s) 351, 1030, 1418, 1954, 2095, 2778, 2967, 3276, 3828
TseFI GTSAC 1 cut(s) 2962
TseI GCWGC 5 cut(s) 753, 2592, 2716, 3282, 3766
Tsp45I GTSAC 1 cut(s) 2962
TspGWI ACGGA 5 cut(s) 2721, 2792, 3135, 3242, 3416
TspRI CASTG 9 cut(s) 351, 1030, 1418, 1954, 2095, 2778, 2967, 3276, 3828
Van91I CCANNNNNTGG 1 cut(s) 2018
Vha464I CTTAAG 1 cut(s) 3902
VpaK11BI GGWCC 6 cut(s) 203, 977, 1637, 2199, 3409, 3476
XceI RCATGY 4 cut(s) 1353, 1843, 4117, 4186
XmiI GTMKAC 1 cut(s) 1934
XmnI GAANNNNTTC 5 cut(s) 1080, 1103, 1518, 2103, 2976
XspI CTAG 5 cut(s) 1184, 2261, 2489, 2540, 3327
ZrmI AGTACT 2 cut(s) 898, 2884
Zsp2I ATGCAT 1 cut(s) 1488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.