Rorug07G0338200

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000129
Physical Location & Seq
Reverse (-)
37161180 .. 37161743
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0338200.1

Sequence Viewer

Length: 564 bp
ATGAGTCTTGATGTTGGAGACAGCTCGGATGCGTGCATCGATCTGAGGACGAGTGTTAGCAAGGATACTGTGGCGGCTCTTTGGGACATGGTTGTGGGTCTCAGCAGTCTTATTTTGGCTTTCATTAGGGTTTTCTTTTTTAGTTTAGTTTTTTTGTTAGTATCAATAAGTCCCTGCTCAACTGAGCTAGGGTTTGGGATTCATGGTTTGGTAGTGGTGCCATTGTTTTGGCGTTATTCCCGGGAACTATGTGTTCTAAGATCGGTGCCTTCTGGTTGTCAACGTGATGGTGAATTGACCTCGCACGTGGTCTGGTGCTATTTGGACACGGTGCTTGAGAGGGTGAAATCGTTCGTCTTAATGTTGGTAGCAAGGTTGTATCGTAACACTCGGGATTGGTTCTCTGTCATTGTAGCCCATGGTTTGGGGCGTGAAATTTGGTTAGGGGTTGGGCTCATTTGGCTCATGGATGTCACTAATTGTGGCGGACCCATAACTATGGTTCTAGATAGGAATGTGCGTAGTGGTGTTGTGACCACAACCGGTCATTCTAATGCGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

187

Amino Acids

20.7

Weight (kDa)

6.4

Isoelectric Point (pI)

27.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 217, 265
AccB7I CCANNNNNTGG 1 cut(s) 424
AciI CCGC 2 cut(s) 74, 486
AcsI RAATTY 1 cut(s) 435
AcvI CACGTG 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 424
AgeI ACCGGT 1 cut(s) 542
AluBI AGCT 2 cut(s) 24, 187
AluI AGCT 2 cut(s) 24, 187
Alw26I GTCTC 2 cut(s) 12, 104
Ama87I CYCGRG 2 cut(s) 240, 390
ApoI RAATTY 1 cut(s) 435
AsiGI ACCGGT 1 cut(s) 542
Asp700I GAANNNNTTC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 488
AsuC2I CCSGG 2 cut(s) 241, 242
AsuHPI GGTGA 2 cut(s) 302, 355
AvaI CYCGRG 2 cut(s) 240, 390
AvaII GGWCC 1 cut(s) 488
BanI GGYRCC 2 cut(s) 217, 265
BanII GRGCYC 1 cut(s) 456
BbrPI CACGTG 1 cut(s) 307
BccI CCATC 1 cut(s) 281
BciVI GTATCC 1 cut(s) 58
BcnI CCSGG 2 cut(s) 241, 242
BcoDI GTCTC 2 cut(s) 12, 104
BfaI CTAG 2 cut(s) 188, 506
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 241, 242
Bme18I GGWCC 1 cut(s) 488
BmeT110I CYCGRG 2 cut(s) 240, 390
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 3 cut(s) 219, 267, 490
BmrFI CCNGG 2 cut(s) 241, 242
BmsI GCATC 2 cut(s) 19, 45
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 2 cut(s) 241, 242
Bsa29I ATCGAT 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 307
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 240, 418
BsaWI WCCGGW 1 cut(s) 542
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse118I RCCGGY 1 cut(s) 542
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 240, 418
BseGI GGATG 2 cut(s) 34, 475
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMII CTCAG 3 cut(s) 35, 115, 174
BshNI GGYRCC 2 cut(s) 217, 265
BshTI ACCGGT 1 cut(s) 542
BshVI ATCGAT 1 cut(s) 39
BsiHKCI CYCGRG 2 cut(s) 240, 390
BsiSI CCGG 2 cut(s) 241, 543
BslFI GGGAC 2 cut(s) 98, 156
BslI CCNNNNNNNGG 1 cut(s) 424
BsmAI GTCTC 2 cut(s) 12, 104
BsmFI GGGAC 2 cut(s) 98, 156
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 2 cut(s) 240, 390
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 2 cut(s) 40, 260
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 2 cut(s) 74, 486
BspCNI CTCAG 3 cut(s) 36, 114, 175
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 3 cut(s) 219, 267, 490
BspT107I GGYRCC 2 cut(s) 217, 265
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 542
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 2 cut(s) 240, 418
BssMI GATC 2 cut(s) 40, 260
BssT1I CCWWGG 1 cut(s) 418
Bst4CI ACNGT 2 cut(s) 70, 331
BstBAI YACGTR 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 4 cut(s) 44, 101, 183, 257
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 2 cut(s) 34, 475
BstKTI GATC 2 cut(s) 43, 263
BstMAI GTCTC 2 cut(s) 12, 104
BstMBI GATC 2 cut(s) 40, 260
BstMWI GCNNNNNNNGC 1 cut(s) 460
BstSCI CCNGG 2 cut(s) 239, 240
BstXI CCANNNNNNTGG 2 cut(s) 228, 499
Bsu15I ATCGAT 1 cut(s) 39
BsuI GTATCC 1 cut(s) 58
BsuTUI ATCGAT 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 2 cut(s) 34, 475
Cac8I GCNNGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 488
Cfr9I CCCGGG 1 cut(s) 240
ClaI ATCGAT 1 cut(s) 39
CspAI ACCGGT 1 cut(s) 542
CviAII CATG 4 cut(s) 88, 203, 419, 466
CviJI RGCY 7 cut(s) 24, 77, 119, 187, 416, 454, 463
CviKI_1 RGCY 7 cut(s) 24, 77, 119, 187, 416, 454, 463
DdeI CTNAG 4 cut(s) 44, 101, 183, 257
DpnI GATC 2 cut(s) 42, 262
DpnII GATC 2 cut(s) 40, 260
EciI GGCGGA 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 418
Eco24I GRGCYC 1 cut(s) 456
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 488
Eco72I CACGTG 1 cut(s) 307
Eco88I CYCGRG 2 cut(s) 240, 390
EcoT14I CCWWGG 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 4 cut(s) 91, 206, 422, 469
FaiI YATR 7 cut(s) 89, 204, 250, 420, 467, 494, 500
FaqI GGGAC 2 cut(s) 98, 156
FatI CATG 4 cut(s) 87, 202, 418, 465
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 2 cut(s) 41, 482
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 188, 506
GluI GCNGC 1 cut(s) 75
HapII CCGG 2 cut(s) 241, 543
Hin1II CATG 4 cut(s) 91, 206, 422, 469
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 2 cut(s) 4, 199
HpaII CCGG 2 cut(s) 241, 543
HphI GGTGA 2 cut(s) 302, 355
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 28, 45
Hpy188III TCNNGA 3 cut(s) 8, 392, 506
Hpy8I GTNNAC 1 cut(s) 281
HpyAV CCTTC 1 cut(s) 279
HpyCH4III ACNGT 2 cut(s) 70, 331
HpyCH4IV ACGT 2 cut(s) 283, 306
HpyCH4V TGCA 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 460
HpyF3I CTNAG 4 cut(s) 44, 101, 183, 257
HpySE526I ACGT 2 cut(s) 283, 306
Hsp92II CATG 4 cut(s) 91, 206, 422, 469
Kzo9I GATC 2 cut(s) 40, 260
LpnPI CCDG 5 cut(s) 187, 254, 258, 298, 556
LweI GCATC 2 cut(s) 19, 45
MaeI CTAG 2 cut(s) 188, 506
MaeII ACGT 2 cut(s) 283, 306
MaeIII GTNAC 3 cut(s) 383, 472, 532
MalI GATC 2 cut(s) 42, 262
MboI GATC 2 cut(s) 40, 260
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 3 cut(s) 293, 435, 478
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 3 cut(s) 39, 310, 333
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 3 cut(s) 92, 497, 552
MspI CCGG 2 cut(s) 241, 543
MspR9I CCNGG 2 cut(s) 241, 242
MwoI GCNNNNNNNGC 1 cut(s) 460
NciI CCSGG 2 cut(s) 241, 242
NcoI CCATGG 1 cut(s) 418
NdeII GATC 2 cut(s) 40, 260
NlaIII CATG 4 cut(s) 91, 206, 422, 469
NlaIV GGNNCC 3 cut(s) 219, 267, 490
NmuCI GTSAC 2 cut(s) 472, 532
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 199
PflMI CCANNNNNTGG 1 cut(s) 424
PinAI ACCGGT 1 cut(s) 542
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 12
PmaCI CACGTG 1 cut(s) 307
PmlI CACGTG 1 cut(s) 307
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 307
PspCI CACGTG 1 cut(s) 307
PspN4I GGNNCC 3 cut(s) 219, 267, 490
PspPI GGNCC 1 cut(s) 488
RseI CAYNNNNRTG 3 cut(s) 92, 497, 552
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 40, 260
Sau96I GGNCC 1 cut(s) 488
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 241, 242
SduI GDGCHC 1 cut(s) 456
SetI ASST 6 cut(s) 26, 189, 286, 302, 309, 377
SfaNI GCATC 2 cut(s) 19, 45
SinI GGWCC 1 cut(s) 488
SmaI CCCGGG 1 cut(s) 242
SmiMI CAYNNNNRTG 3 cut(s) 92, 497, 552
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 3 cut(s) 293, 435, 478
SsiI CCGC 2 cut(s) 74, 486
SspMI CTAG 2 cut(s) 188, 506
StyD4I CCNGG 2 cut(s) 239, 240
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 70, 331
TaiI ACGT 2 cut(s) 286, 309
TaqI TCGA 1 cut(s) 39
TasI AATT 3 cut(s) 293, 435, 478
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TseFI GTSAC 2 cut(s) 472, 532
Tsp45I GTSAC 2 cut(s) 472, 532
TspDTI ATGAA 2 cut(s) 112, 191
TspMI CCCGGG 1 cut(s) 240
Van91I CCANNNNNTGG 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 488
XapI RAATTY 1 cut(s) 435
XbaI TCTAGA 1 cut(s) 505
XmaI CCCGGG 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 2 cut(s) 188, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.