Rw0G005770

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00231
OG0000129
Physical Location & Seq
Reverse (-)
1913 .. 3319
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G005770.1

Sequence Viewer

Length: 1215 bp
ATGGATTCACACCTGAATGAAATGCTTTCGTACTTAGACATCGGGTGTCCTGATGTTCGTATCATAGGGATTTGTGGTATGGGTGGTATCGGTAAGACAACTATTGCACAAGTGGTTTTTGAAAGGGTACAAGCTCAGTTTGAAGGTTCCAGCTTTCTCGAGAATGTTAGAGAGGTAATTGAAAAGCAAGGTGCAGTTCATTTACAAGAGCAACTTCTTTCGGACTTGCTGAAATGTAATGTAAATGTACAGAACACTAAAATGGGAAAAAACATAATGAGGCAGAGACTACATACTAAAATGGTTCTGATCATTCTTGATGACGTGGACCAAGAAGAACAATTGGAAGCACTGTGCGAGCGTGAATCATTTGGTCCAGGGAGTAGAATCATTATAACTTCAAGAGATGAACATTTGCTCAGTGCGGTTGAAGGAGATAAAGTGTACAATGTGAATCCATTAACTGATGCTGAAGCTCTTCAGCTCTTTAGTATGAAAGCCTTTAAGAAAGACCAGCTGGTTGGAGAAGAAGTTGTCAAGCTATCCAAGGAATTTTTGAAATATGCTAATGGCCTTGCATTAGCTATTAAAGTTTTAGGTTCTTCTGTTAAGGGTAGAAGTGTAGAAATGTGGTCAAGTGCATTAGATAGACTAAAAAAAAGTCCTGATAAAAAAATTATTAATGTTCTCAAGGTTAGTTTTGATGGATTAGAACCGAGGGAACAGAATATTTTTTTGGACATCGCATGTTTCCTCAAAGGGGTGAACATAGATCGTGTAAGAAGAATACTACAGGGTAGTGATGCCCACTGTCCAGACTTTGATATACAGGTTCTCCTGGACAAATCTATGGTAACTCTATTTGGAAAAAAATTGTGGATGCATGATTTGATACAAGAATTGGGTTGGGAAGTTGTTCGCCAAGAATGCCATGATGACCCTGGAAAACGTAGTAGATTGTGGCTTTCAAGTGAGATCATTGATGTACTTGATCAGAGTAAGGTAACAAAATATTTAAGATTGCTCAAAATTTGGAATGTGAAGTTTTCTGGAAACATCAAATATCTTTCTAAGAAGTTACAGTTTCTGGAATGGGATGAATGTCCCTTAGATTCCTTCCCCTCAGACTTTCAACTAGATTACACCTTTTGCTGGTTTGGAGTCCCTTCAATTTCTCAGTCTTTCATTGTGTTCGAGCCTGAAGAAGTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

404

Amino Acids

46.07

Weight (kDa)

5.47

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 5 - 171 2.3e-24 NB-ARC domain
NACHT PF05729 22 - 168 1e-06 NACHT domain
WHD_ROQ1 PF23282 240 - 308 1.2e-15 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 395
AciI CCGC 1 cut(s) 425
AcsI RAATTY 2 cut(s) 551, 1029
AcuI CTGAAG 2 cut(s) 464, 492
AfaI GTAC 5 cut(s) 32, 129, 249, 446, 987
AfiI CCNNNNNNNGG 2 cut(s) 760, 1152
AgsI TTSAA 9 cut(s) 122, 143, 182, 402, 431, 559, 969, 1133, 1170
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 3 cut(s) 376, 837, 940
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
AluBI AGCT 7 cut(s) 134, 153, 476, 484, 517, 541, 584
AluI AGCT 7 cut(s) 134, 153, 476, 484, 517, 541, 584
Alw26I GTCTC 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 1087
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 1 cut(s) 571
ApoI RAATTY 2 cut(s) 551, 1029
AseI ATTAAT 1 cut(s) 681
Asp700I GAANNNNTTC 2 cut(s) 477, 915
AspS9I GGNCC 2 cut(s) 328, 374
AsuHPI GGTGA 1 cut(s) 775
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 2 cut(s) 328, 374
BccI CCATC 1 cut(s) 698
BciT130I CCWGG 3 cut(s) 378, 839, 942
BclI TGATCA 2 cut(s) 309, 991
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 1 cut(s) 1136
BfmI CTRYAG 1 cut(s) 791
Bme1390I CCNGG 3 cut(s) 378, 839, 942
Bme18I GGWCC 2 cut(s) 328, 374
BmeT110I CYCGRG 1 cut(s) 158
BmgBI CACGTC 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 328, 374
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 3 cut(s) 378, 839, 942
BmsI GCATC 3 cut(s) 457, 793, 870
BpuEI CTTGAG 1 cut(s) 674
BsaJI CCNNGG 4 cut(s) 377, 546, 716, 940
BsaXI ACNNNNNCTCC 6 cut(s) 426, 456, 516, 546, 819, 849
Bsc4I CCNNNNNNNGG 2 cut(s) 760, 1152
BseBI CCWGG 3 cut(s) 378, 839, 942
BseDI CCNNGG 4 cut(s) 377, 546, 716, 940
BseGI GGATG 2 cut(s) 885, 1102
BseLI CCNNNNNNNGG 2 cut(s) 760, 1152
BseMII CTCAG 4 cut(s) 149, 433, 1137, 1190
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 1 cut(s) 573
BsiHKCI CYCGRG 1 cut(s) 158
BslFI GGGAC 2 cut(s) 1089, 1148
BslI CCNNNNNNNGG 2 cut(s) 760, 1152
BsmAI GTCTC 1 cut(s) 280
BsmFI GGGAC 2 cut(s) 1089, 1148
BsmI GAATGC 1 cut(s) 932
BsnI GGCC 1 cut(s) 573
BsoBI CYCGRG 1 cut(s) 158
Bsp1407I TGTACA 2 cut(s) 247, 444
Bsp143I GATC 4 cut(s) 309, 772, 975, 991
BspACI CCGC 1 cut(s) 425
BspANI GGCC 1 cut(s) 573
BspCNI CTCAG 4 cut(s) 148, 432, 1136, 1189
BspLI GGNNCC 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 483
BsrGI TGTACA 2 cut(s) 247, 444
BssECI CCNNGG 4 cut(s) 377, 546, 716, 940
BssMI GATC 4 cut(s) 309, 772, 975, 991
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 3 cut(s) 378, 839, 942
Bst4CI ACNGT 3 cut(s) 354, 812, 1083
Bst6I CTCTTC 1 cut(s) 483
BstAUI TGTACA 2 cut(s) 247, 444
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 7 cut(s) 34, 135, 419, 1071, 1108, 1123, 1176
BstF5I GGATG 2 cut(s) 885, 1102
BstKTI GATC 4 cut(s) 312, 775, 978, 994
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 4 cut(s) 309, 772, 975, 991
BstMWI GCNNNNNNNGC 1 cut(s) 927
BstNI CCWGG 3 cut(s) 378, 839, 942
BstNSI RCATGY 1 cut(s) 750
BstSCI CCNGG 3 cut(s) 376, 837, 940
BstSFI CTRYAG 1 cut(s) 791
BstXI CCANNNNNNTGG 1 cut(s) 521
BsuRI GGCC 1 cut(s) 573
BtgZI GCGATG 1 cut(s) 727
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 2 cut(s) 885, 1102
BtsIMutI CAGTG 3 cut(s) 350, 427, 808
Cac8I GCNNGC 1 cut(s) 359
CaiI CAGNNNCTG 1 cut(s) 1087
Cfr13I GGNCC 2 cut(s) 328, 374
Csp6I GTAC 5 cut(s) 31, 128, 248, 445, 986
CviAII CATG 3 cut(s) 747, 884, 932
CviQI GTAC 5 cut(s) 31, 128, 248, 445, 986
DdeI CTNAG 7 cut(s) 34, 135, 419, 1071, 1108, 1123, 1176
DpnI GATC 4 cut(s) 311, 774, 977, 993
DpnII GATC 4 cut(s) 309, 772, 975, 991
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 546
Eco47I GGWCC 2 cut(s) 328, 374
Eco57I CTGAAG 2 cut(s) 464, 492
Eco88I CYCGRG 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 376, 837, 940
EcoT14I CCWWGG 1 cut(s) 546
EcoT22I ATGCAT 1 cut(s) 885
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 3 cut(s) 750, 887, 935
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 2 cut(s) 1089, 1148
FatI CATG 3 cut(s) 746, 883, 931
FbaI TGATCA 2 cut(s) 309, 991
FokI GGATG 2 cut(s) 892, 1109
FspBI CTAG 1 cut(s) 1136
HaeIII GGCC 1 cut(s) 573
Hin1II CATG 3 cut(s) 750, 887, 935
HinfI GANTC 6 cut(s) 5, 365, 387, 454, 1112, 1161
HphI GGTGA 1 cut(s) 775
Hpy166II GTNNAC 3 cut(s) 328, 445, 766
Hpy188I TCNGA 4 cut(s) 223, 309, 996, 1126
Hpy8I GTNNAC 3 cut(s) 328, 445, 766
HpyAV CCTTC 4 cut(s) 137, 425, 1126, 1176
HpyCH4III ACNGT 3 cut(s) 354, 812, 1083
HpyCH4IV ACGT 2 cut(s) 324, 949
HpyCH4V TGCA 5 cut(s) 107, 194, 578, 641, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 927
HpyF3I CTNAG 7 cut(s) 34, 135, 419, 1071, 1108, 1123, 1176
HpySE526I ACGT 2 cut(s) 324, 949
Hsp92II CATG 3 cut(s) 750, 887, 935
Ksp22I TGATCA 2 cut(s) 309, 991
Kzo9I GATC 4 cut(s) 309, 772, 975, 991
LguI GCTCTTC 1 cut(s) 483
LweI GCATC 3 cut(s) 457, 793, 870
MaeI CTAG 1 cut(s) 1136
MaeII ACGT 2 cut(s) 324, 949
MaeIII GTNAC 3 cut(s) 853, 1003, 1077
MalI GATC 4 cut(s) 311, 774, 977, 993
MboI GATC 4 cut(s) 309, 772, 975, 991
MboII GAAGA 6 cut(s) 347, 470, 539, 594, 795, 1214
MfeI CAATTG 1 cut(s) 341
MluCI AATT 8 cut(s) 177, 341, 551, 675, 872, 899, 1029, 1170
MlyI GAGTC 1 cut(s) 1170
MmeI TCCRAC 1 cut(s) 502
MnlI CCTC 5 cut(s) 166, 273, 711, 764, 1132
Mph1103I ATGCAT 1 cut(s) 885
MroXI GAANNNNTTC 2 cut(s) 477, 915
MseI TTAA 6 cut(s) 461, 504, 588, 609, 681, 1016
MslI CAYNNNNRTG 2 cut(s) 15, 260
MspA1I CMGCKG 1 cut(s) 517
MspR9I CCNGG 3 cut(s) 378, 839, 942
MunI CAATTG 1 cut(s) 341
Mva1269I GAATGC 1 cut(s) 932
MvaI CCWGG 3 cut(s) 378, 839, 942
MwoI GCNNNNNNNGC 1 cut(s) 927
NdeII GATC 4 cut(s) 309, 772, 975, 991
NlaIII CATG 3 cut(s) 750, 887, 935
NlaIV GGNNCC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 885
NspI RCATGY 1 cut(s) 750
PaeR7I CTCGAG 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 483
PctI GAATGC 1 cut(s) 932
PdmI GAANNNNTTC 2 cut(s) 477, 915
PfeI GAWTC 5 cut(s) 5, 365, 387, 454, 1112
PfoI TCCNGGA 1 cut(s) 837
PleI GAGTC 1 cut(s) 1169
PpsI GAGTC 1 cut(s) 1169
PshBI ATTAAT 1 cut(s) 681
PsiI TTATAA 1 cut(s) 395
Psp6I CCWGG 3 cut(s) 376, 837, 940
PspGI CCWGG 3 cut(s) 376, 837, 940
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 328, 374
PstNI CAGNNNCTG 1 cut(s) 1087
PvuII CAGCTG 1 cut(s) 517
RsaI GTAC 5 cut(s) 32, 129, 249, 446, 987
RsaNI GTAC 5 cut(s) 31, 128, 248, 445, 986
RseI CAYNNNNRTG 2 cut(s) 15, 260
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 6 cut(s) 461, 504, 588, 609, 681, 1016
Sau3AI GATC 4 cut(s) 309, 772, 975, 991
Sau96I GGNCC 2 cut(s) 328, 374
SchI GAGTC 1 cut(s) 1170
ScrFI CCNGG 3 cut(s) 378, 839, 942
SfaNI GCATC 3 cut(s) 457, 793, 870
SfcI CTRYAG 1 cut(s) 791
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 2 cut(s) 328, 374
SlaI CTCGAG 1 cut(s) 158
SmiMI CAYNNNNRTG 2 cut(s) 15, 260
SmlI CTYRAG 2 cut(s) 158, 689
SmoI CTYRAG 2 cut(s) 158, 689
Sse9I AATT 8 cut(s) 177, 341, 551, 675, 872, 899, 1029, 1170
SsiI CCGC 1 cut(s) 425
SspI AATATT 2 cut(s) 730, 1013
SspMI CTAG 1 cut(s) 1136
StyD4I CCNGG 3 cut(s) 376, 837, 940
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 3 cut(s) 354, 812, 1083
TaiI ACGT 2 cut(s) 327, 952
TaqI TCGA 2 cut(s) 159, 1194
TasI AATT 8 cut(s) 177, 341, 551, 675, 872, 899, 1029, 1170
TatI WGTACW 3 cut(s) 247, 444, 985
TfiI GAWTC 5 cut(s) 5, 365, 387, 454, 1112
Tru1I TTAA 6 cut(s) 461, 504, 588, 609, 681, 1016
Tru9I TTAA 6 cut(s) 461, 504, 588, 609, 681, 1016
TscAI CASTG 3 cut(s) 357, 427, 815
TspDTI ATGAA 6 cut(s) 33, 188, 423, 509, 1113, 1174
TspRI CASTG 3 cut(s) 357, 427, 815
VpaK11BI GGWCC 2 cut(s) 328, 374
VspI ATTAAT 1 cut(s) 681
XapI RAATTY 2 cut(s) 551, 1029
XceI RCATGY 1 cut(s) 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 938
XhoI CTCGAG 1 cut(s) 158
XmnI GAANNNNTTC 2 cut(s) 477, 915
XspI CTAG 1 cut(s) 1136
Zsp2I ATGCAT 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.