Rmu_sc0013246.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013246.1
OG0000129
Physical Location & Seq
Reverse (-)
1 .. 1106
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013246.1_g000001.1.cds

Sequence Viewer

Length: 931 bp
atgctttacattggtggaacttccataagggagttatctttcattgtaggcatgaagcatctgcagtatctatcctgccgaggatgtaaatgtttagtttcagaatcatggaaaggtctgtcttcgttatcgagtttgatagagctagacttgagttattgcaatctgatggatggagcaattctcaatgattttagcagcctaatctccttggaattgttagatttaagtggtaattgctttgtgcgattacctgaaagtatctctcaactctcaaaactcgagactctgcgcttgactaattgcaaacagcttcaattgctgcccaagaagcttccgttaagtcttcgaaacgtgaatgcacaagattgtacttcactgacggattacccaaatcaaatcaaagtattgaattcatgggagtcgggagttactactgttaattccctcaattcttcagcagttaaagtctcacaaagtttttcaagtactggtggtgggggggaacttatacaagtgcgtatgacatataatcatactgaggggaaacaagttgatcatttgccagtgacagctgaaccgattctaaaacaattgcagacgtcttccaggtcaacttacatgaccgtaggtgctggagatgaaattccagagtggttcagcactacatctaccaggaatcccatatcaatctcgatacctcaaaatctgaccgatgatgacgagtggaacggatttgccgcgtgtgctattttctcagtcaaggggcatactgctctctcccttattgaaccggatcctgatttttctaattactcgtatcaaatcacattggaaactgatgttgtgcgtctggaaccatttgtgttgggagtggagtcagtggactttggcagctttggattaagttctcatctgcgtgtgattttcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

310

Amino Acids

34.1

Weight (kDa)

4.98

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 605
AccII CGCG 1 cut(s) 743
AciI CCGC 1 cut(s) 741
AclWI GGATC 2 cut(s) 791, 804
AcsI RAATTY 2 cut(s) 412, 645
AcuI CTGAAG 1 cut(s) 441
AcyI GRCGYC 1 cut(s) 602
AfaI GTAC 2 cut(s) 373, 490
AgsI TTSAA 4 cut(s) 317, 412, 486, 791
AjnI CCWGG 2 cut(s) 608, 674
AluBI AGCT 5 cut(s) 145, 313, 334, 575, 897
AluI AGCT 5 cut(s) 145, 313, 334, 575, 897
Alw26I GTCTC 2 cut(s) 278, 475
AlwI GGATC 2 cut(s) 791, 804
Ama87I CYCGRG 1 cut(s) 281
ApeKI GCWGC 3 cut(s) 198, 322, 894
ApoI RAATTY 2 cut(s) 412, 645
Asp700I GAANNNNTTC 1 cut(s) 582
AspLEI GCGC 1 cut(s) 294
AsuII TTCGAA 1 cut(s) 349
AvaI CYCGRG 1 cut(s) 281
BamHI GGATCC 1 cut(s) 796
BbsI GAAGAC 3 cut(s) 114, 338, 597
BbvI GCAGC 3 cut(s) 210, 309, 906
BccI CCATC 2 cut(s) 163, 167
BciT130I CCWGG 2 cut(s) 610, 676
BclI TGATCA 1 cut(s) 556
BcoDI GTCTC 2 cut(s) 278, 475
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 62
BisI GCNGC 4 cut(s) 199, 323, 741, 895
BlsI GCNGC 4 cut(s) 200, 324, 742, 896
BmcAI AGTACT 1 cut(s) 490
Bme1390I CCNGG 2 cut(s) 610, 676
BmeT110I CYCGRG 1 cut(s) 281
BmiI GGNNCC 2 cut(s) 798, 858
BmrFI CCNGG 2 cut(s) 610, 676
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 3 cut(s) 114, 338, 597
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpmI CTGGAG 1 cut(s) 657
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 602
BsaJI CCNNGG 2 cut(s) 79, 210
BsaWI WCCGGW 1 cut(s) 793
Bse1I ACTGG 2 cut(s) 496, 566
BseBI CCWGG 2 cut(s) 610, 676
BseDI CCNNGG 2 cut(s) 79, 210
BseGI GGATG 2 cut(s) 89, 178
BseMII CTCAG 2 cut(s) 531, 771
BseNI ACTGG 2 cut(s) 496, 566
BseXI GCAGC 3 cut(s) 210, 309, 906
Bsh1236I CGCG 1 cut(s) 743
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 1 cut(s) 794
BsmAI GTCTC 2 cut(s) 278, 475
BsmI GAATGC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 281
Bsp119I TTCGAA 1 cut(s) 349
Bsp143I GATC 2 cut(s) 556, 796
BspACI CCGC 1 cut(s) 741
BspCNI CTCAG 2 cut(s) 532, 770
BspFNI CGCG 1 cut(s) 743
BspLI GGNNCC 2 cut(s) 798, 858
BspMAI CTGCAG 1 cut(s) 66
BspPI GGATC 2 cut(s) 791, 804
BspT104I TTCGAA 1 cut(s) 349
BsrI ACTGG 2 cut(s) 496, 566
BssECI CCNNGG 2 cut(s) 79, 210
BssMI GATC 2 cut(s) 556, 796
BssNI GRCGYC 1 cut(s) 602
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 610, 676
Bst4CI ACNGT 2 cut(s) 439, 628
BstACI GRCGYC 1 cut(s) 602
BstBI TTCGAA 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 540, 757
BstF5I GGATG 2 cut(s) 89, 178
BstFNI CGCG 1 cut(s) 743
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 2 cut(s) 559, 799
BstMAI GTCTC 2 cut(s) 278, 475
BstMBI GATC 2 cut(s) 556, 796
BstMWI GCNNNNNNNGC 3 cut(s) 319, 331, 746
BstNI CCWGG 2 cut(s) 610, 676
BstSCI CCNGG 2 cut(s) 608, 674
BstSFI CTRYAG 1 cut(s) 62
BstUI CGCG 1 cut(s) 743
BstV1I GCAGC 3 cut(s) 210, 309, 906
BstV2I GAAGAC 3 cut(s) 114, 338, 597
BstX2I RGATCY 1 cut(s) 796
BstYI RGATCY 1 cut(s) 796
BtsCI GGATG 2 cut(s) 89, 178
BtsIMutI CAGTG 3 cut(s) 377, 573, 888
CfoI GCGC 1 cut(s) 294
CseI GACGC 1 cut(s) 839
Csp6I GTAC 2 cut(s) 372, 489
CviAII CATG 4 cut(s) 52, 108, 417, 622
CviJI RGCY 6 cut(s) 145, 201, 313, 334, 575, 897
CviKI_1 RGCY 6 cut(s) 145, 201, 313, 334, 575, 897
CviQI GTAC 2 cut(s) 372, 489
DdeI CTNAG 2 cut(s) 540, 757
DpnI GATC 2 cut(s) 558, 798
DpnII GATC 2 cut(s) 556, 796
Eco130I CCWWGG 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 281
EcoRI GAATTC 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 608, 674
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 4 cut(s) 55, 111, 420, 625
FatI CATG 4 cut(s) 51, 107, 416, 621
FbaI TGATCA 1 cut(s) 556
Fnu4HI GCNGC 4 cut(s) 199, 323, 741, 895
FokI GGATG 2 cut(s) 96, 185
Fsp4HI GCNGC 4 cut(s) 199, 323, 741, 895
FspBI CTAG 1 cut(s) 146
GlaI GCGC 1 cut(s) 293
GluI GCNGC 4 cut(s) 199, 323, 741, 895
GsuI CTGGAG 1 cut(s) 657
HapII CCGG 1 cut(s) 794
HgaI GACGC 1 cut(s) 839
HhaI GCGC 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 602
Hin1II CATG 4 cut(s) 55, 111, 420, 625
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 6 cut(s) 104, 286, 422, 583, 679, 878
HpaII CCGG 1 cut(s) 794
Hpy166II GTNNAC 2 cut(s) 615, 886
Hpy188I TCNGA 3 cut(s) 103, 168, 711
Hpy188III TCNNGA 6 cut(s) 283, 426, 650, 694, 800, 854
Hpy8I GTNNAC 2 cut(s) 615, 886
HpyCH4III ACNGT 2 cut(s) 439, 628
HpyCH4IV ACGT 2 cut(s) 354, 602
HpyCH4V TGCA 5 cut(s) 64, 162, 306, 362, 598
HpyF10VI GCNNNNNNNGC 3 cut(s) 319, 331, 746
HpyF3I CTNAG 2 cut(s) 540, 757
HpySE526I ACGT 2 cut(s) 354, 602
Hsp92I GRCGYC 1 cut(s) 602
Hsp92II CATG 4 cut(s) 55, 111, 420, 625
HspAI GCGC 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 2 cut(s) 556, 796
LmnI GCTCC 1 cut(s) 176
Lsp1109I GCAGC 3 cut(s) 210, 309, 906
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 146
MaeII ACGT 2 cut(s) 354, 602
MaeIII GTNAC 2 cut(s) 430, 568
MalI GATC 2 cut(s) 558, 798
MboI GATC 2 cut(s) 556, 796
MboII GAAGA 4 cut(s) 114, 338, 447, 597
MfeI CAATTG 2 cut(s) 317, 593
MflI RGATCY 1 cut(s) 796
MlyI GAGTC 3 cut(s) 280, 431, 887
MnlI CCTC 4 cut(s) 74, 458, 535, 711
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 5 cut(s) 227, 341, 441, 465, 905
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 1 cut(s) 794
MspR9I CCNGG 2 cut(s) 610, 676
MunI CAATTG 2 cut(s) 317, 593
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 2 cut(s) 610, 676
MvnI CGCG 1 cut(s) 743
MwoI GCNNNNNNNGC 3 cut(s) 319, 331, 746
NdeII GATC 2 cut(s) 556, 796
NlaIII CATG 4 cut(s) 55, 111, 420, 625
NlaIV GGNNCC 2 cut(s) 798, 858
NmeAIII GCCGAG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 568
NspV TTCGAA 1 cut(s) 349
PaeR7I CTCGAG 1 cut(s) 281
PctI GAATGC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 3 cut(s) 104, 583, 679
PkrI GCNGC 4 cut(s) 200, 324, 742, 896
PleI GAGTC 3 cut(s) 280, 430, 886
PpsI GAGTC 3 cut(s) 280, 430, 886
Psp6I CCWGG 2 cut(s) 608, 674
PspGI CCWGG 2 cut(s) 608, 674
PspN4I GGNNCC 2 cut(s) 798, 858
PstI CTGCAG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 796
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 2 cut(s) 373, 490
RsaNI GTAC 2 cut(s) 372, 489
RseI CAYNNNNRTG 1 cut(s) 918
SaqAI TTAA 5 cut(s) 227, 341, 441, 465, 905
SatI GCNGC 4 cut(s) 199, 323, 741, 895
Sau3AI GATC 2 cut(s) 556, 796
ScaI AGTACT 1 cut(s) 490
SchI GAGTC 3 cut(s) 280, 431, 887
ScrFI CCNGG 2 cut(s) 610, 676
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 62
Sfr274I CTCGAG 1 cut(s) 281
SfuI TTCGAA 1 cut(s) 349
SlaI CTCGAG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 918
SmlI CTYRAG 2 cut(s) 151, 281
SmoI CTYRAG 2 cut(s) 151, 281
SsiI CCGC 1 cut(s) 741
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 2 cut(s) 608, 674
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 439, 628
TaiI ACGT 2 cut(s) 357, 605
TaqI TCGA 4 cut(s) 131, 282, 349, 695
TaqII GACCGA 1 cut(s) 728
TatI WGTACW 2 cut(s) 371, 488
TauI GCSGC 1 cut(s) 743
TfiI GAWTC 3 cut(s) 104, 583, 679
Tru1I TTAA 5 cut(s) 227, 341, 441, 465, 905
Tru9I TTAA 5 cut(s) 227, 341, 441, 465, 905
TscAI CASTG 3 cut(s) 384, 573, 888
TseFI GTSAC 1 cut(s) 568
TseI GCWGC 3 cut(s) 198, 322, 894
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 4 cut(s) 31, 68, 405, 657
TspGWI ACGGA 3 cut(s) 327, 398, 747
TspRI CASTG 3 cut(s) 384, 573, 888
XapI RAATTY 2 cut(s) 412, 645
XhoI CTCGAG 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 1 cut(s) 146
ZraI GACGTC 1 cut(s) 603
ZrmI AGTACT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.