Rh7AG492000

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000129
Physical Location & Seq
Forward (+)
69217988 .. 69248203
30216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG492000.1

Sequence Viewer

Length: 2223 bp
ATGGATGGAGCATTTCTCAATGATTTTGGCAGCCTAATCTCCTTAACATCGTTAGATTTGAGTGGTAATTGCTTTGCGCGATTAGCTGAAAGCATCTCTCAACTCTCAAAGCTCGACACTCTGCACTTGAGGAATTGCGGACAGCTTCAAGTGCTGCCCAAGAAGCTTCCGTTAAGTCTTCATAACGTGTTTGCAGAAGGATGTACTTCACTGACGGATTACCCAAATCAAATCAAAGTATTGAATTCATGGGAGTCGGGAGTGACTACTGTCAATTCCATCAATTCTTCAGAACTCGGAGTCTCACAAAGTTACCTAATGTCGGTGATTCCAAGTAAGGAGGGAGGATCTCCAGAGCTGCATGTGACATATAAGCATACAGTGGGCAAACAAGTTGATCATTATTTGCAAGCGGAGACAAATCTTTTGTTTTCTCCGGTGCAGATGCCTTCCTGCTCAGATTTCATTGGCATATATCCTAGAGATGAAATTCCAGAGTGGTTCAGCACTATATCTACCAGAAATCCCATATCAATCTCGATACGTCATCAAAATCTGGCTGATGATAACGAGTGGAAGGGATTTGCCGCGTGTGCTATATTCTCAGTCAAGGGGCATACTGCTCTCACCCTTATTGAACCGGATCCTGATTTTCTTAATTACTCGTGTCAAGTCACATTGGAAACTGATGTTATGCGTCTGGAACCAAAAGTGTTGGAAATGGAATTACGCCCTCTTGGATCAAGTTCTCATCTGCTTGTGATTTTCTTTTTATCTAGTTGGAAGTTTCCACAGTGGGGGTTAAATCGATCAACTGTAGTGAGGGCTACATTTGAAACCACCAATCCATCCATGGTGGTCCAGAAATGTGGAATTCGTCTAGTCTATGAGAAAGATGCTGGATGGCATTCCAGAGTATTCGGGGAAGATGATCCGATTTGTCTGAATGAAGTTGAGGACGACGCCTCTGTATTGGAGTCTGACTGGCTTAGTCAATATTTGGAATGGGAGAAATTCATTCCACCCTTGGAAGAAGAATCCACACTCAGAAAGAACCTTGAGTCTGTTCTTCCAAGATTCCTTGAGGCACTAAACAGTTATCCTGTAATGTTCGAATTTAACCTCAGAGGATGCCCAGCGTGGTTTAAGTTATTTGTCCTTGCTAGGGGGTCAAATTTGAACCTAGGGCCAATCATGCTGCCTCAAAATCTACACAAGAGCAAGAAGTGGATGGGAGTTGCAATATACGCATCACTTGTAGAGGAAGTGGGGCAAACAATTAAAGCGGACAACTATTGGGTATTTGTTACACTATTTGGTACGTGTGTGGCCAAAAAACTTAAGCACGTCAGGCCATTGTCAGAAGAACATCATCAACTATTGGTTATTTACATACCGCGGGCACAGATTTCCGAAGAGTTATTGTTGTTCACTCAGACATTAAAAACTGCAATGTCCATTGAAGTCTGCCCTCATGTAAAGGTTCAAAGATATGGGTTCCGTATTGTGTACCAGGAAGATATACAAGGATTTGCTGATACAATTATCCAGTGCATGCAGAGGGAAGATTCTCTTGAATTTCACAATAAGTTGGGGGTAGAAGAATGGATAGAGTTGATACGATTGCAAGGTGCCCATTTAGAGAGAATGACGGAACGGGATTTCAGAACCCCACGGGAAAAATACTTTGAATTGCACTCACGAAAATATAGAAATTGGGACTGGTCTGACCCTCGTCGTGCTTATTGTGTCTTCAAGAGAGTTGAAATCTCCAAGTTGAAATGGTTCATGCCTTTTATCAACCAAGGCAACTCGGCAGAAATCCAACTGCCTCTGAATGTGTTCGATGATGATAATTGGTTGGGGTTTGCCGTATGTTTTCAGTTGTTCCACGACCAATGTCTCGGTAGTACTGCTCCTGATTCAGAGGATGTTATGCTTATTTACCGTCTGGCCTCTGATATTGCTTGGCAGGGCGTATTTGATTCCAACATGCAGGTAAGTTTAAAGATTGGAAAGCCATCGGCAGTCGATATGACTTTGTTCTTTTATACACCGCGCACTAGTCTTAGAAAGGTTTGGAGGCAATGCAAATTGGCAAGGATAACTATGGATTTCCCAATAAGCCCACGCTTAGCGGTGCATAGTTGTGCCCTTCGTCTACTATTTAAGGAGGACGTTGAACATCTTGTAGAAACACTGACCCTCGCCGAATTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

740

Amino Acids

84.87

Weight (kDa)

5.68

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 160 - 299 2.4e-08 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1987
AccB1I GGYRCC 1 cut(s) 1631
AccI GTMKAC 1 cut(s) 2161
AccII CGCG 4 cut(s) 79, 590, 1399, 2059
AciI CCGC 8 cut(s) 138, 413, 588, 1286, 1397, 1399, 2057, 2138
AclWI GGATC 5 cut(s) 355, 638, 651, 748, 926
AcoI YGGCCR 1 cut(s) 1329
AcsI RAATTY 7 cut(s) 244, 489, 873, 1013, 1115, 1174, 1577
AcuI CTGAAG 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 963
AfaI GTAC 4 cut(s) 205, 1321, 1511, 1912
AfiI CCNNNNNNNGG 3 cut(s) 322, 797, 1165
AflII CTTAAG 1 cut(s) 1340
AflIII ACRYGT 2 cut(s) 186, 1322
AhlI ACTAGT 1 cut(s) 2063
AjiI CACGTC 1 cut(s) 1348
AjnI CCWGG 1 cut(s) 1512
AluBI AGCT 5 cut(s) 86, 112, 145, 166, 358
AluI AGCT 5 cut(s) 86, 112, 145, 166, 358
Alw26I GTCTC 3 cut(s) 307, 410, 1907
AlwI GGATC 5 cut(s) 355, 638, 651, 748, 926
AoxI GGCC 4 cut(s) 1187, 1329, 1352, 1953
ApeKI GCWGC 4 cut(s) 30, 154, 358, 1198
ApoI RAATTY 7 cut(s) 244, 489, 873, 1013, 1115, 1174, 1577
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
Asp700I GAANNNNTTC 2 cut(s) 1784, 1841
AspA2I CCTAGG 1 cut(s) 1183
AspLEI GCGC 2 cut(s) 79, 2061
AspS9I GGNCC 2 cut(s) 859, 1187
AsuHPI GGTGA 2 cut(s) 337, 619
AsuII TTCGAA 1 cut(s) 1113
AvaII GGWCC 1 cut(s) 859
AvrII CCTAGG 1 cut(s) 1183
BaeGI GKGCMC 3 cut(s) 1405, 1636, 2155
BaeI ACNNNNGTAYC 2 cut(s) 1311, 1344
BalI TGGCCA 1 cut(s) 1331
BamHI GGATCC 1 cut(s) 643
BanI GGYRCC 1 cut(s) 1631
BauI CACGAG 1 cut(s) 664
BbsI GAAGAC 2 cut(s) 170, 1744
BbvI GCAGC 4 cut(s) 42, 141, 345, 1185
BccI CCATC 5 cut(s) 287, 856, 897, 1225, 2029
BceAI ACGGC 1 cut(s) 1856
BciT130I CCWGG 1 cut(s) 1514
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 3 cut(s) 307, 410, 1907
BcuI ACTAGT 1 cut(s) 2063
BfaI CTAG 6 cut(s) 480, 777, 881, 1164, 1184, 2064
BfmI CTRYAG 1 cut(s) 816
BfrI CTTAAG 1 cut(s) 1340
BfuAI ACCTGC 1 cut(s) 1987
BisI GCNGC 5 cut(s) 31, 155, 359, 588, 1199
BlnI CCTAGG 1 cut(s) 1183
BlpI GCTNAGC 1 cut(s) 2134
BlsI GCNGC 5 cut(s) 32, 156, 360, 589, 1200
BmcAI AGTACT 1 cut(s) 1912
Bme1390I CCNGG 1 cut(s) 1514
Bme18I GGWCC 1 cut(s) 859
BmgBI CACGTC 1 cut(s) 1348
BmgT120I GGNCC 2 cut(s) 859, 1187
BmiI GGNNCC 4 cut(s) 645, 705, 1499, 1633
BmrFI CCNGG 1 cut(s) 1514
BmsI GCATC 5 cut(s) 102, 435, 886, 1121, 1259
BoxI GACNNNNGTC 3 cut(s) 269, 1734, 1899
BpiI GAAGAC 2 cut(s) 170, 1744
BplI GAGNNNNNCTC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 336
Bpu1102I GCTNAGC 1 cut(s) 2134
Bpu14I TTCGAA 1 cut(s) 1113
BpuEI CTTGAG 3 cut(s) 148, 1079, 1103
Bsa29I ATCGAT 1 cut(s) 808
BsaAI YACGTR 1 cut(s) 1323
BsaHI GRCGYC 1 cut(s) 963
BsaJI CCNNGG 6 cut(s) 852, 1026, 1183, 1397, 1673, 1804
BsaWI WCCGGW 2 cut(s) 436, 640
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 797, 1165
Bse1I ACTGG 3 cut(s) 989, 1549, 1727
Bse3DI GCAATG 2 cut(s) 1458, 2093
BseBI CCWGG 1 cut(s) 1514
BseCI ATCGAT 1 cut(s) 808
BseDI CCNNGG 6 cut(s) 852, 1026, 1183, 1397, 1673, 1804
BseGI GGATG 7 cut(s) 10, 206, 848, 908, 1136, 1236, 1936
BseLI CCNNNNNNNGG 3 cut(s) 322, 797, 1165
BseMI GCAATG 2 cut(s) 1458, 2093
BseMII CTCAG 5 cut(s) 471, 618, 1060, 1138, 1448
BseNI ACTGG 3 cut(s) 989, 1549, 1727
BseSI GKGCMC 3 cut(s) 1405, 1636, 2155
BseXI GCAGC 4 cut(s) 42, 141, 345, 1185
BseYI CCCAGC 1 cut(s) 1135
BsgI GTGCAG 2 cut(s) 107, 461
Bsh1236I CGCG 4 cut(s) 79, 590, 1399, 2059
BshFI GGCC 4 cut(s) 1189, 1331, 1354, 1955
BshNI GGYRCC 1 cut(s) 1631
BshVI ATCGAT 1 cut(s) 808
BsiSI CCGG 2 cut(s) 437, 641
BslFI GGGAC 1 cut(s) 1733
BslI CCNNNNNNNGG 3 cut(s) 322, 797, 1165
BsmAI GTCTC 3 cut(s) 307, 410, 1907
BsmFI GGGAC 1 cut(s) 1733
BsmI GAATGC 1 cut(s) 907
BsnI GGCC 4 cut(s) 1189, 1331, 1354, 1955
Bsp119I TTCGAA 1 cut(s) 1113
Bsp1286I GDGCHC 3 cut(s) 1405, 1636, 2155
Bsp143I GATC 6 cut(s) 347, 397, 643, 740, 809, 931
Bsp1720I GCTNAGC 1 cut(s) 2134
Bsp19I CCATGG 1 cut(s) 852
BspACI CCGC 8 cut(s) 138, 413, 588, 1286, 1397, 1399, 2057, 2138
BspANI GGCC 4 cut(s) 1189, 1331, 1354, 1955
BspCNI CTCAG 5 cut(s) 470, 617, 1059, 1137, 1447
BspDI ATCGAT 1 cut(s) 808
BspFNI CGCG 4 cut(s) 79, 590, 1399, 2059
BspLI GGNNCC 4 cut(s) 645, 705, 1499, 1633
BspMI ACCTGC 1 cut(s) 1987
BspPI GGATC 5 cut(s) 355, 638, 651, 748, 926
BspT104I TTCGAA 1 cut(s) 1113
BspT107I GGYRCC 1 cut(s) 1631
BspTI CTTAAG 1 cut(s) 1340
BsrDI GCAATG 2 cut(s) 1458, 2093
BsrI ACTGG 3 cut(s) 989, 1549, 1727
BssECI CCNNGG 6 cut(s) 852, 1026, 1183, 1397, 1673, 1804
BssMI GATC 6 cut(s) 347, 397, 643, 740, 809, 931
BssNI GRCGYC 1 cut(s) 963
BssSI CACGAG 1 cut(s) 664
BssT1I CCWWGG 4 cut(s) 852, 1026, 1183, 1804
Bst2BI CACGAG 1 cut(s) 664
Bst2UI CCWGG 1 cut(s) 1514
Bst4CI ACNGT 6 cut(s) 271, 382, 795, 817, 1097, 1949
Bst6I CTCTTC 1 cut(s) 1410
BstACI GRCGYC 1 cut(s) 963
BstAFI CTTAAG 1 cut(s) 1340
BstBAI YACGTR 1 cut(s) 1323
BstBI TTCGAA 1 cut(s) 1113
BstC8I GCNNGC 3 cut(s) 411, 1401, 1556
BstDEI CTNAG 8 cut(s) 457, 604, 989, 1046, 1124, 1434, 2069, 2134
BstDSI CCRYGG 3 cut(s) 852, 1397, 1673
BstF5I GGATG 7 cut(s) 10, 206, 848, 908, 1136, 1236, 1936
BstFNI CGCG 4 cut(s) 79, 590, 1399, 2059
BstHHI GCGC 2 cut(s) 79, 2061
BstKTI GATC 6 cut(s) 350, 400, 646, 743, 812, 934
BstMAI GTCTC 3 cut(s) 307, 410, 1907
BstMBI GATC 6 cut(s) 347, 397, 643, 740, 809, 931
BstMWI GCNNNNNNNGC 7 cut(s) 83, 151, 163, 593, 1195, 1247, 1351
BstNI CCWGG 1 cut(s) 1514
BstNSI RCATGY 3 cut(s) 365, 1558, 1996
BstPAI GACNNNNGTC 3 cut(s) 269, 1734, 1899
BstSCI CCNGG 1 cut(s) 1512
BstSFI CTRYAG 1 cut(s) 816
BstSLI GKGCMC 3 cut(s) 1405, 1636, 2155
BstUI CGCG 4 cut(s) 79, 590, 1399, 2059
BstV1I GCAGC 4 cut(s) 42, 141, 345, 1185
BstV2I GAAGAC 2 cut(s) 170, 1744
BstX2I RGATCY 2 cut(s) 347, 643
BstXI CCANNNNNNTGG 1 cut(s) 869
BstYI RGATCY 2 cut(s) 347, 643
Bsu15I ATCGAT 1 cut(s) 808
BsuRI GGCC 4 cut(s) 1189, 1331, 1354, 1955
BsuTUI ATCGAT 1 cut(s) 808
BtgI CCRYGG 3 cut(s) 852, 1397, 1673
BtrI CACGTC 1 cut(s) 1348
BtsCI GGATG 7 cut(s) 10, 206, 848, 908, 1136, 1236, 1936
BtsIMutI CAGTG 5 cut(s) 209, 387, 800, 1556, 2198
BveI ACCTGC 1 cut(s) 1987
Cac8I GCNNGC 3 cut(s) 411, 1401, 1556
CfoI GCGC 2 cut(s) 79, 2061
Cfr13I GGNCC 2 cut(s) 859, 1187
Cfr42I CCGCGG 1 cut(s) 1400
ClaI ATCGAT 1 cut(s) 808
CseI GACGC 2 cut(s) 686, 971
Csp6I GTAC 4 cut(s) 204, 1320, 1510, 1911
CviAII CATG 8 cut(s) 249, 362, 853, 1195, 1475, 1555, 1789, 1993
CviQI GTAC 4 cut(s) 204, 1320, 1510, 1911
DdeI CTNAG 8 cut(s) 457, 604, 989, 1046, 1124, 1434, 2069, 2134
DpnI GATC 6 cut(s) 349, 399, 645, 742, 811, 933
DpnII GATC 6 cut(s) 347, 397, 643, 740, 809, 931
DraI TTTAAA 1 cut(s) 2007
EaeI YGGCCR 1 cut(s) 1329
Eam1104I CTCTTC 1 cut(s) 1410
EarI CTCTTC 1 cut(s) 1410
Eco130I CCWWGG 4 cut(s) 852, 1026, 1183, 1804
Eco47I GGWCC 1 cut(s) 859
Eco57I CTGAAG 1 cut(s) 273
EcoRI GAATTC 2 cut(s) 244, 873
EcoRII CCWGG 1 cut(s) 1512
EcoT14I CCWWGG 4 cut(s) 852, 1026, 1183, 1804
ErhI CCWWGG 4 cut(s) 852, 1026, 1183, 1804
FaeI CATG 8 cut(s) 252, 365, 856, 1198, 1478, 1558, 1792, 1996
FalI AAGNNNNNCTT 2 cut(s) 1557, 1589
FaqI GGGAC 1 cut(s) 1733
FatI CATG 8 cut(s) 248, 361, 852, 1194, 1474, 1554, 1788, 1992
FauI CCCGC 1 cut(s) 1392
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 2161
Fnu4HI GCNGC 5 cut(s) 31, 155, 359, 588, 1199
FokI GGATG 7 cut(s) 17, 213, 835, 915, 1143, 1243, 1943
Fsp4HI GCNGC 5 cut(s) 31, 155, 359, 588, 1199
FspBI CTAG 6 cut(s) 480, 777, 881, 1164, 1184, 2064
GlaI GCGC 2 cut(s) 78, 2060
GluI GCNGC 5 cut(s) 31, 155, 359, 588, 1199
GsaI CCCAGC 1 cut(s) 1139
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 4 cut(s) 1189, 1331, 1354, 1955
HapII CCGG 2 cut(s) 437, 641
HgaI GACGC 2 cut(s) 686, 971
HhaI GCGC 2 cut(s) 79, 2061
Hin1I GRCGYC 1 cut(s) 963
Hin1II CATG 8 cut(s) 252, 365, 856, 1198, 1478, 1558, 1792, 1996
Hin6I GCGC 2 cut(s) 77, 2059
HinP1I GCGC 2 cut(s) 77, 2059
HindIII AAGCTT 1 cut(s) 164
HpaII CCGG 2 cut(s) 437, 641
HphI GGTGA 2 cut(s) 337, 619
Hpy166II GTNNAC 3 cut(s) 1431, 1510, 2162
Hpy8I GTNNAC 3 cut(s) 1431, 1510, 2162
Hpy99I CGWCG 2 cut(s) 965, 1740
HpyAV CCTTC 4 cut(s) 191, 459, 571, 2165
HpyCH4III ACNGT 6 cut(s) 271, 382, 795, 817, 1097, 1949
HpyCH4IV ACGT 5 cut(s) 186, 544, 1322, 1347, 2178
HpyF10VI GCNNNNNNNGC 7 cut(s) 83, 151, 163, 593, 1195, 1247, 1351
HpyF3I CTNAG 8 cut(s) 457, 604, 989, 1046, 1124, 1434, 2069, 2134
HpySE526I ACGT 5 cut(s) 186, 544, 1322, 1347, 2178
Hsp92I GRCGYC 1 cut(s) 963
Hsp92II CATG 8 cut(s) 252, 365, 856, 1198, 1478, 1558, 1792, 1996
HspAI GCGC 2 cut(s) 77, 2059
Ksp22I TGATCA 1 cut(s) 397
KspI CCGCGG 1 cut(s) 1400
Kzo9I GATC 6 cut(s) 347, 397, 643, 740, 809, 931
LmnI GCTCC 2 cut(s) 8, 1921
Lsp1109I GCAGC 4 cut(s) 42, 141, 345, 1185
LweI GCATC 5 cut(s) 102, 435, 886, 1121, 1259
MaeI CTAG 6 cut(s) 480, 777, 881, 1164, 1184, 2064
MaeII ACGT 5 cut(s) 186, 544, 1322, 1347, 2178
MaeIII GTNAC 5 cut(s) 262, 311, 364, 673, 1306
MalI GATC 6 cut(s) 349, 399, 645, 742, 811, 933
MboI GATC 6 cut(s) 347, 397, 643, 740, 809, 931
MflI RGATCY 2 cut(s) 347, 643
MhlI GDGCHC 3 cut(s) 1405, 1636, 2155
MlsI TGGCCA 1 cut(s) 1331
MluNI TGGCCA 1 cut(s) 1331
MlyI GAGTC 4 cut(s) 263, 309, 986, 1070
MmeI TCCRAC 4 cut(s) 696, 761, 1849, 2013
Mox20I TGGCCA 1 cut(s) 1331
MroXI GAANNNNTTC 2 cut(s) 1784, 1841
MscI TGGCCA 1 cut(s) 1331
MslI CAYNNNNRTG 1 cut(s) 2148
Msp20I TGGCCA 1 cut(s) 1331
MspA1I CMGCKG 1 cut(s) 1399
MspCI CTTAAG 1 cut(s) 1340
MspI CCGG 2 cut(s) 437, 641
MspR9I CCNGG 1 cut(s) 1514
Mva1269I GAATGC 1 cut(s) 907
MvaI CCWGG 1 cut(s) 1514
MvnI CGCG 4 cut(s) 79, 590, 1399, 2059
MwoI GCNNNNNNNGC 7 cut(s) 83, 151, 163, 593, 1195, 1247, 1351
NcoI CCATGG 1 cut(s) 852
NdeII GATC 6 cut(s) 347, 397, 643, 740, 809, 931
NlaIII CATG 8 cut(s) 252, 365, 856, 1198, 1478, 1558, 1792, 1996
NlaIV GGNNCC 4 cut(s) 645, 705, 1499, 1633
NmeAIII GCCGAG 1 cut(s) 1793
NmuCI GTSAC 3 cut(s) 262, 364, 673
NspI RCATGY 3 cut(s) 365, 1558, 1996
NspV TTCGAA 1 cut(s) 1113
PaeI GCATGC 1 cut(s) 1558
PctI GAATGC 1 cut(s) 907
PdmI GAANNNNTTC 2 cut(s) 1784, 1841
PfeI GAWTC 6 cut(s) 328, 1037, 1077, 1568, 1922, 1985
PkrI GCNGC 5 cut(s) 32, 156, 360, 589, 1200
PleI GAGTC 4 cut(s) 262, 308, 985, 1069
PpsI GAGTC 4 cut(s) 262, 308, 985, 1069
Ppu21I YACGTR 1 cut(s) 1323
PshAI GACNNNNGTC 3 cut(s) 269, 1734, 1899
Psp6I CCWGG 1 cut(s) 1512
PspFI CCCAGC 1 cut(s) 1135
PspGI CCWGG 1 cut(s) 1512
PspN4I GGNNCC 4 cut(s) 645, 705, 1499, 1633
PspPI GGNCC 2 cut(s) 859, 1187
PsuI RGATCY 2 cut(s) 347, 643
RsaI GTAC 4 cut(s) 205, 1321, 1511, 1912
RsaNI GTAC 4 cut(s) 204, 1320, 1510, 1911
RseI CAYNNNNRTG 1 cut(s) 2148
SacII CCGCGG 1 cut(s) 1400
SatI GCNGC 5 cut(s) 31, 155, 359, 588, 1199
Sau3AI GATC 6 cut(s) 347, 397, 643, 740, 809, 931
Sau96I GGNCC 2 cut(s) 859, 1187
ScaI AGTACT 1 cut(s) 1912
SchI GAGTC 4 cut(s) 263, 309, 986, 1070
ScrFI CCNGG 1 cut(s) 1514
SduI GDGCHC 3 cut(s) 1405, 1636, 2155
SfaNI GCATC 5 cut(s) 102, 435, 886, 1121, 1259
SfcI CTRYAG 1 cut(s) 816
Sfr303I CCGCGG 1 cut(s) 1400
SfuI TTCGAA 1 cut(s) 1113
SgrBI CCGCGG 1 cut(s) 1400
SinI GGWCC 1 cut(s) 859
SmiMI CAYNNNNRTG 1 cut(s) 2148
SmlI CTYRAG 4 cut(s) 127, 1058, 1082, 1340
SmoI CTYRAG 4 cut(s) 127, 1058, 1082, 1340
SpeI ACTAGT 1 cut(s) 2063
SphI GCATGC 1 cut(s) 1558
SsiI CCGC 8 cut(s) 138, 413, 588, 1286, 1397, 1399, 2057, 2138
SspI AATATT 1 cut(s) 998
SspMI CTAG 6 cut(s) 480, 777, 881, 1164, 1184, 2064
StyD4I CCNGG 1 cut(s) 1512
StyI CCWWGG 4 cut(s) 852, 1026, 1183, 1804
TaaI ACNGT 6 cut(s) 271, 382, 795, 817, 1097, 1949
TaiI ACGT 5 cut(s) 189, 547, 1325, 1350, 2181
TaqI TCGA 6 cut(s) 114, 539, 808, 1113, 1845, 2031
TatI WGTACW 2 cut(s) 203, 1910
TauI GCSGC 1 cut(s) 590
TfiI GAWTC 6 cut(s) 328, 1037, 1077, 1568, 1922, 1985
TscAI CASTG 5 cut(s) 216, 387, 800, 1556, 2205
TseFI GTSAC 3 cut(s) 262, 364, 673
TseI GCWGC 4 cut(s) 30, 154, 358, 1198
Tsp45I GTSAC 3 cut(s) 262, 364, 673
TspDTI ATGAA 7 cut(s) 170, 237, 454, 501, 963, 1006, 1777
TspGWI ACGGA 4 cut(s) 159, 230, 1490, 1667
TspRI CASTG 5 cut(s) 216, 387, 800, 1556, 2205
Vha464I CTTAAG 1 cut(s) 1340
VpaK11BI GGWCC 1 cut(s) 859
XapI RAATTY 7 cut(s) 244, 489, 873, 1013, 1115, 1174, 1577
XceI RCATGY 3 cut(s) 365, 1558, 1996
XcmI CCANNNNNNNNNTGG 1 cut(s) 850
XmaJI CCTAGG 1 cut(s) 1183
XmiI GTMKAC 1 cut(s) 2161
XmnI GAANNNNTTC 2 cut(s) 1784, 1841
XspI CTAG 6 cut(s) 480, 777, 881, 1164, 1184, 2064
ZrmI AGTACT 1 cut(s) 1912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.