Rroxscaffold_3G00236130

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000129
Physical Location & Seq
Reverse (-)
23328465 .. 23330286
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236130.1

Sequence Viewer

Length: 684 bp
ATGGACTTTTACATCAAGATCAGTGATAGCGCTCATGTAAAGGTTCAAACATGTGGGTTCCGTATTGTGTACCAAGAAGATATACAAGGGTTTGCTGATACAATCATCCGGTGCATGCAAAGGGAAGATTCTCTTAAATCTCACAATAAGTTGGTGGTAGAAGAATGGATACGATTGATACGATTGCAAGGTGCCCTAAATTTACAGAGAATGACAAAACAGGATTCACGAACCCCACGGGAAAAACAATTTGAATTGCACTTACAAAAATATAGAAATTGGGACTGGTCTGACCCTCATCCTGTTTGTTGTCACTTCGAGGGAGCTGAAATTTTCAAGTTGAAATGGTTCATGCCTTTCATCAACCAAGGCAACTCTGCAGAAATCCAACTGCCTCTGAATGTGTTAAATGATGATAATTGGTTGGGCTTTGCCGTATGTTCTCAATTGTCCCACGACCAATATCCAAACATTAGTCTTGGCAGTACTGCTGCTGATTCAGAAGAGGTTATGCTTATTTGCTGTCTGGCCTCTGATGTTGCTTGGCAGGGCTTATTTGATTACAACTTTGAATTACGTTTAAAGATTCGAGAGCCATCGGAATACGATGCGACTTGGTTCTTTATATACCGCGCACTAAAGTTTGTAGTAATGTTTGGAGACAATGCAAATTGGCCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

227

Amino Acids

26.65

Weight (kDa)

5.38

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccII CGCG 1 cut(s) 633
AciI CCGC 1 cut(s) 631
AcoI YGGCCR 1 cut(s) 674
AcsI RAATTY 2 cut(s) 199, 330
AfaI GTAC 2 cut(s) 71, 487
AfeI AGCGCT 1 cut(s) 31
AflIII ACRYGT 1 cut(s) 50
AgsI TTSAA 5 cut(s) 47, 254, 337, 343, 572
AjnI CCWGG 1 cut(s) 676
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 654
Aor51HI AGCGCT 1 cut(s) 31
AoxI GGCC 2 cut(s) 528, 674
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 2 cut(s) 199, 330
Asp700I GAANNNNTTC 1 cut(s) 347
AspLEI GCGC 2 cut(s) 32, 635
BaeGI GKGCMC 1 cut(s) 196
BalI TGGCCA 1 cut(s) 676
BanI GGYRCC 1 cut(s) 191
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbvI GCAGC 1 cut(s) 478
BccI CCATC 1 cut(s) 604
BceAI ACGGC 1 cut(s) 419
BciT130I CCWGG 1 cut(s) 678
BciVI GTATCC 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 654
BfmI CTRYAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 33
BfuI GTATCC 1 cut(s) 162
BisI GCNGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 493
BmcAI AGTACT 1 cut(s) 487
Bme1390I CCNGG 1 cut(s) 678
BmiI GGNNCC 2 cut(s) 59, 193
BmrFI CCNGG 1 cut(s) 678
BmsI GCATC 1 cut(s) 598
BsaJI CCNNGG 2 cut(s) 236, 367
BsaWI WCCGGW 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 290
BseBI CCWGG 1 cut(s) 678
BseDI CCNNGG 2 cut(s) 236, 367
BseGI GGATG 2 cut(s) 105, 298
BseNI ACTGG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 1 cut(s) 478
Bsh1236I CGCG 1 cut(s) 633
BshFI GGCC 2 cut(s) 530, 676
BshNI GGYRCC 1 cut(s) 191
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 2 cut(s) 296, 436
BsmAI GTCTC 1 cut(s) 654
BsmFI GGGAC 2 cut(s) 296, 436
BsnI GGCC 2 cut(s) 530, 676
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 1 cut(s) 631
BspANI GGCC 2 cut(s) 530, 676
BspFNI CGCG 1 cut(s) 633
BspLI GGNNCC 2 cut(s) 59, 193
BspMAI CTGCAG 1 cut(s) 382
BspT107I GGYRCC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 236, 367
BssMI GATC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 678
Bst6I CTCTTC 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 116
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 105, 298
BstFNI CGCG 1 cut(s) 633
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 2 cut(s) 32, 635
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 654
BstMBI GATC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 678
BstNSI RCATGY 2 cut(s) 54, 118
BstSCI CCNGG 1 cut(s) 676
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 196
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 1 cut(s) 478
BsuI GTATCC 1 cut(s) 162
BsuRI GGCC 2 cut(s) 530, 676
BtgI CCRYGG 1 cut(s) 236
BtsCI GGATG 2 cut(s) 105, 298
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 116
CfoI GCGC 2 cut(s) 32, 635
Csp6I GTAC 2 cut(s) 70, 486
CviAII CATG 4 cut(s) 35, 51, 115, 352
CviJI RGCY 6 cut(s) 326, 429, 530, 552, 595, 676
CviKI_1 RGCY 6 cut(s) 326, 429, 530, 552, 595, 676
CviQI GTAC 2 cut(s) 70, 486
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
DraI TTTAAA 1 cut(s) 582
EaeI YGGCCR 1 cut(s) 674
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 367
Eco47III AGCGCT 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 676
EcoT14I CCWWGG 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 4 cut(s) 38, 54, 118, 355
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 2 cut(s) 296, 436
FatI CATG 4 cut(s) 34, 50, 114, 351
Fnu4HI GCNGC 1 cut(s) 492
FokI GGATG 2 cut(s) 92, 285
Fsp4HI GCNGC 1 cut(s) 492
GlaI GCGC 2 cut(s) 31, 634
GluI GCNGC 1 cut(s) 492
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 2 cut(s) 530, 676
HapII CCGG 1 cut(s) 109
HhaI GCGC 2 cut(s) 32, 635
Hin1II CATG 4 cut(s) 38, 54, 118, 355
Hin6I GCGC 2 cut(s) 30, 633
HinP1I GCGC 2 cut(s) 30, 633
HinfI GANTC 4 cut(s) 128, 224, 497, 586
HpaII CCGG 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 5 cut(s) 292, 399, 502, 535, 601
Hpy188III TCNNGA 3 cut(s) 16, 228, 590
Hpy8I GTNNAC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 6 cut(s) 114, 118, 187, 259, 380, 668
HpySE526I ACGT 1 cut(s) 577
Hsp92II CATG 4 cut(s) 38, 54, 118, 355
HspAI GCGC 2 cut(s) 30, 633
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 7 cut(s) 122, 206, 271, 315, 512, 533, 663
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 1 cut(s) 598
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 4 cut(s) 89, 137, 173, 515
MfeI CAATTG 1 cut(s) 446
MhlI GDGCHC 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 676
MluCI AATT 9 cut(s) 199, 248, 254, 277, 330, 418, 446, 572, 670
MluNI TGGCCA 1 cut(s) 676
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 5 cut(s) 306, 313, 405, 499, 541
Mox20I TGGCCA 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 347
MscI TGGCCA 1 cut(s) 676
MseI TTAA 3 cut(s) 135, 407, 581
Msp20I TGGCCA 1 cut(s) 676
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 678
MunI CAATTG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 678
MvnI CGCG 1 cut(s) 633
NdeII GATC 1 cut(s) 18
NlaIII CATG 4 cut(s) 38, 54, 118, 355
NlaIV GGNNCC 2 cut(s) 59, 193
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 2 cut(s) 54, 118
PaeI GCATGC 1 cut(s) 118
PciI ACATGT 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 4 cut(s) 128, 224, 497, 586
PkrI GCNGC 1 cut(s) 493
PscI ACATGT 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 676
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 2 cut(s) 59, 193
PstI CTGCAG 1 cut(s) 382
RsaI GTAC 2 cut(s) 71, 487
RsaNI GTAC 2 cut(s) 70, 486
SaqAI TTAA 3 cut(s) 135, 407, 581
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 1 cut(s) 18
ScaI AGTACT 1 cut(s) 487
ScrFI CCNGG 1 cut(s) 678
SduI GDGCHC 1 cut(s) 196
SetI ASST 5 cut(s) 45, 193, 328, 510, 580
SfaNI GCATC 1 cut(s) 598
SfcI CTRYAG 1 cut(s) 378
SphI GCATGC 1 cut(s) 118
Sse9I AATT 9 cut(s) 199, 248, 254, 277, 330, 418, 446, 572, 670
SsiI CCGC 1 cut(s) 631
StyD4I CCNGG 1 cut(s) 676
StyI CCWWGG 1 cut(s) 367
TaiI ACGT 1 cut(s) 580
TaqI TCGA 2 cut(s) 318, 589
TasI AATT 9 cut(s) 199, 248, 254, 277, 330, 418, 446, 572, 670
TatI WGTACW 1 cut(s) 485
TfiI GAWTC 4 cut(s) 128, 224, 497, 586
Tru1I TTAA 3 cut(s) 135, 407, 581
Tru9I TTAA 3 cut(s) 135, 407, 581
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 340, 349
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 28
XapI RAATTY 2 cut(s) 199, 330
XceI RCATGY 2 cut(s) 54, 118
XmnI GAANNNNTTC 1 cut(s) 347
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.