resistance protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1946 |
| Acc36I | ACCTGC | 1 cut(s) | 1557 |
| AccB1I | GGYRCC | 1 cut(s) | 4100 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2030 |
| AccBSI | CCGCTC | 2 cut(s) | 143, 433 |
| AccI | GTMKAC | 2 cut(s) | 1946, 4639 |
| AccII | CGCG | 5 cut(s) | 112, 1355, 3203, 3877, 4537 |
| AccIII | TCCGGA | 3 cut(s) | 1276, 1742, 3889 |
| AciI | CCGC | 9 cut(s) | 141, 433, 1864, 3201, 3348, 3688, 3875, 3877, 4535 |
| AclI | AACGTT | 1 cut(s) | 1340 |
| AclWI | GGATC | 6 cut(s) | 362, 1216, 1389, 3092, 3251, 3264 |
| AcoI | YGGCCR | 3 cut(s) | 3171, 3878, 4578 |
| AcsI | RAATTY | 6 cut(s) | 118, 533, 2539, 2818, 3105, 3650 |
| AcuI | CTGAAG | 5 cut(s) | 504, 1101, 2060, 2171, 2847 |
| AcyI | GRCGYC | 2 cut(s) | 1943, 3600 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 2030, 2622, 3413, 3806, 4111, 4362 |
| AflII | CTTAAG | 2 cut(s) | 2557, 2617 |
| AflIII | ACRYGT | 3 cut(s) | 2760, 2993, 3183 |
| AgeI | ACCGGT | 1 cut(s) | 4362 |
| AjnI | CCWGG | 5 cut(s) | 985, 1552, 2869, 3094, 4580 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1328, 1360 |
| AleI | CACNNNNGTG | 1 cut(s) | 3683 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1200, 1232, 2859, 2891 |
| Alw21I | GWGCWC | 3 cut(s) | 402, 1095, 3825 |
| Alw26I | GTCTC | 6 cut(s) | 321, 1252, 2056, 2342, 2684, 3586 |
| AlwI | GGATC | 6 cut(s) | 362, 1216, 1389, 3092, 3251, 3264 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2870 |
| Ama87I | CYCGRG | 2 cut(s) | 2687, 3701 |
| Aor13HI | TCCGGA | 3 cut(s) | 1276, 1742, 3889 |
| AoxI | GGCC | 5 cut(s) | 1180, 3171, 3830, 3878, 4578 |
| ApeKI | GCWGC | 4 cut(s) | 759, 2316, 2604, 2728 |
| ApoI | RAATTY | 6 cut(s) | 118, 533, 2539, 2818, 3105, 3650 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2113, 2145 |
| AseI | ATTAAT | 1 cut(s) | 2952 |
| AsiGI | ACCGGT | 1 cut(s) | 4362 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1530, 2115, 3321, 4253, 4307 |
| AspLEI | GCGC | 2 cut(s) | 114, 4539 |
| AspS9I | GGNCC | 6 cut(s) | 209, 937, 983, 2211, 3475, 3548 |
| AsuHPI | GGTGA | 6 cut(s) | 556, 611, 1072, 1923, 2012, 3448 |
| AsuII | TTCGAA | 2 cut(s) | 830, 3398 |
| AvaI | CYCGRG | 2 cut(s) | 2687, 3701 |
| AvaII | GGWCC | 6 cut(s) | 209, 937, 983, 2211, 3475, 3548 |
| BaeGI | GKGCMC | 2 cut(s) | 4105, 4633 |
| BalI | TGGCCA | 1 cut(s) | 4580 |
| BamHI | GGATCC | 1 cut(s) | 3256 |
| BanI | GGYRCC | 1 cut(s) | 4100 |
| BanII | GRGCYC | 1 cut(s) | 1095 |
| BauI | CACGAG | 1 cut(s) | 3683 |
| BbsI | GAAGAC | 3 cut(s) | 391, 1665, 4213 |
| Bbv12I | GWGCWC | 3 cut(s) | 402, 1095, 3825 |
| BbvI | GCAGC | 4 cut(s) | 771, 2303, 2616, 2715 |
| BceAI | ACGGC | 3 cut(s) | 4288, 4322, 4410 |
| BciT130I | CCWGG | 5 cut(s) | 987, 1554, 2871, 3096, 4582 |
| BciVI | GTATCC | 2 cut(s) | 3534, 4377 |
| BclI | TGATCA | 2 cut(s) | 3022, 3924 |
| BcoDI | GTCTC | 6 cut(s) | 321, 1252, 2056, 2342, 2684, 3586 |
| BfmI | CTRYAG | 2 cut(s) | 2925, 4281 |
| BfrI | CTTAAG | 2 cut(s) | 2557, 2617 |
| BfuAI | ACCTGC | 1 cut(s) | 1557 |
| BfuI | GTATCC | 2 cut(s) | 3534, 4377 |
| BglII | AGATCT | 3 cut(s) | 16, 1918, 1972 |
| BisI | GCNGC | 9 cut(s) | 141, 760, 1864, 2317, 2605, 2729, 3201, 3349, 3878 |
| BlpI | GCTNAGC | 1 cut(s) | 4612 |
| BlsI | GCNGC | 9 cut(s) | 142, 761, 1865, 2318, 2606, 2730, 3202, 3350, 3879 |
| Bme1390I | CCNGG | 5 cut(s) | 987, 1554, 2871, 3096, 4582 |
| Bme18I | GGWCC | 6 cut(s) | 209, 937, 983, 2211, 3475, 3548 |
| BmeT110I | CYCGRG | 2 cut(s) | 2687, 3701 |
| BmgT120I | GGNCC | 6 cut(s) | 209, 937, 983, 2211, 3475, 3548 |
| BmiI | GGNNCC | 6 cut(s) | 1968, 2212, 3258, 3318, 3968, 4102 |
| BmrFI | CCNGG | 5 cut(s) | 987, 1554, 2871, 3096, 4582 |
| BmrI | ACTGGG | 1 cut(s) | 402 |
| BmsI | GCATC | 9 cut(s) | 433, 517, 1066, 1485, 2305, 3319, 3502, 4461, 4508 |
| BmuI | ACTGGG | 1 cut(s) | 402 |
| BoxI | GACNNNNGTC | 3 cut(s) | 333, 2843, 4203 |
| BpiI | GAAGAC | 3 cut(s) | 391, 1665, 4213 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2574, 2606 |
| BpmI | CTGGAG | 5 cut(s) | 1935, 2213, 2423, 2892, 3117 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4612 |
| Bpu14I | TTCGAA | 2 cut(s) | 830, 3398 |
| BpuEI | CTTGAG | 6 cut(s) | 1109, 1130, 1703, 2722, 3746, 3839 |
| BsaAI | YACGTR | 2 cut(s) | 902, 2761 |
| BsaHI | GRCGYC | 2 cut(s) | 1943, 3600 |
| BsaJI | CCNNGG | 6 cut(s) | 986, 1155, 2485, 3468, 3663, 3875 |
| BsaWI | WCCGGW | 6 cut(s) | 1276, 1742, 1828, 3253, 3889, 4362 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1933, 1963, 2826, 2856, 3587, 3617 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 2030, 2622, 3413, 3806, 4111, 4362 |
| Bse118I | RCCGGY | 1 cut(s) | 4362 |
| Bse1I | ACTGG | 8 cut(s) | 350, 397, 871, 1930, 2257, 2353, 4018, 4196 |
| Bse3DI | GCAATG | 3 cut(s) | 2225, 3927, 4574 |
| BseAI | TCCGGA | 3 cut(s) | 1276, 1742, 3889 |
| BseBI | CCWGG | 5 cut(s) | 987, 1554, 2871, 3096, 4582 |
| BseDI | CCNNGG | 6 cut(s) | 986, 1155, 2485, 3468, 3663, 3875 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 2030, 2622, 3413, 3806, 4111, 4362 |
| BseMI | GCAATG | 3 cut(s) | 2225, 3927, 4574 |
| BseNI | ACTGG | 8 cut(s) | 350, 397, 871, 1930, 2257, 2353, 4018, 4196 |
| BseRI | GAGGAG | 3 cut(s) | 39, 42, 45 |
| BseSI | GKGCMC | 2 cut(s) | 4105, 4633 |
| BseXI | GCAGC | 4 cut(s) | 771, 2303, 2616, 2715 |
| BsgI | GTGCAG | 2 cut(s) | 1053, 1644 |
| Bsh1236I | CGCG | 5 cut(s) | 112, 1355, 3203, 3877, 4537 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4363 |
| BshFI | GGCC | 5 cut(s) | 1182, 3173, 3832, 3880, 4580 |
| BshNI | GGYRCC | 1 cut(s) | 4100 |
| BshTI | ACCGGT | 1 cut(s) | 4362 |
| BsiEI | CGRYCG | 1 cut(s) | 4363 |
| BsiHKAI | GWGCWC | 3 cut(s) | 402, 1095, 3825 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2687, 3701 |
| BsiSI | CCGG | 6 cut(s) | 1277, 1743, 1829, 3254, 3890, 4363 |
| BslFI | GGGAC | 4 cut(s) | 2224, 2861, 4202, 4339 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 2030, 2622, 3413, 3806, 4111, 4362 |
| BsmAI | GTCTC | 6 cut(s) | 321, 1252, 2056, 2342, 2684, 3586 |
| BsmFI | GGGAC | 4 cut(s) | 2224, 2861, 4202, 4339 |
| BsmI | GAATGC | 2 cut(s) | 1547, 2088 |
| BsnI | GGCC | 5 cut(s) | 1182, 3173, 3832, 3880, 4580 |
| BsoBI | CYCGRG | 2 cut(s) | 2687, 3701 |
| Bsp119I | TTCGAA | 2 cut(s) | 830, 3398 |
| Bsp1286I | GDGCHC | 5 cut(s) | 402, 1095, 3825, 4105, 4633 |
| Bsp13I | TCCGGA | 3 cut(s) | 1276, 1742, 3889 |
| Bsp1407I | TGTACA | 3 cut(s) | 856, 1441, 4050 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4612 |
| Bsp19I | CCATGG | 1 cut(s) | 3468 |
| BspACI | CCGC | 9 cut(s) | 141, 433, 1864, 3201, 3348, 3688, 3875, 3877, 4535 |
| BspANI | GGCC | 5 cut(s) | 1182, 3173, 3832, 3880, 4580 |
| BspEI | TCCGGA | 3 cut(s) | 1276, 1742, 3889 |
| BspFNI | CGCG | 5 cut(s) | 112, 1355, 3203, 3877, 4537 |
| BspLI | GGNNCC | 6 cut(s) | 1968, 2212, 3258, 3318, 3968, 4102 |
| BspMAI | CTGCAG | 1 cut(s) | 4285 |
| BspMI | ACCTGC | 1 cut(s) | 1557 |
| BspPI | GGATC | 6 cut(s) | 362, 1216, 1389, 3092, 3251, 3264 |
| BspQI | GCTCTTC | 1 cut(s) | 1542 |
| BspT104I | TTCGAA | 2 cut(s) | 830, 3398 |
| BspT107I | GGYRCC | 1 cut(s) | 4100 |
| BspTI | CTTAAG | 2 cut(s) | 2557, 2617 |
| BsrBI | CCGCTC | 2 cut(s) | 143, 433 |
| BsrDI | GCAATG | 3 cut(s) | 2225, 3927, 4574 |
| BsrFI | RCCGGY | 1 cut(s) | 4362 |
| BsrGI | TGTACA | 3 cut(s) | 856, 1441, 4050 |
| BsrI | ACTGG | 8 cut(s) | 350, 397, 871, 1930, 2257, 2353, 4018, 4196 |
| BssAI | RCCGGY | 1 cut(s) | 4362 |
| BssECI | CCNNGG | 6 cut(s) | 986, 1155, 2485, 3468, 3663, 3875 |
| BssNI | GRCGYC | 2 cut(s) | 1943, 3600 |
| BssSI | CACGAG | 1 cut(s) | 3683 |
| BssT1I | CCWWGG | 4 cut(s) | 1155, 2485, 3468, 3663 |
| Bst2BI | CACGAG | 1 cut(s) | 3683 |
| Bst2UI | CCWGG | 5 cut(s) | 987, 1554, 2871, 3096, 4582 |
| Bst4CI | ACNGT | 6 cut(s) | 861, 1427, 1796, 2842, 3433, 3740 |
| Bst6I | CTCTTC | 5 cut(s) | 7, 228, 1250, 1542, 1974 |
| BstACI | GRCGYC | 2 cut(s) | 1943, 3600 |
| BstAFI | CTTAAG | 2 cut(s) | 2557, 2617 |
| BstAUI | TGTACA | 3 cut(s) | 856, 1441, 4050 |
| BstBAI | YACGTR | 2 cut(s) | 902, 2761 |
| BstBI | TTCGAA | 2 cut(s) | 830, 3398 |
| BstC8I | GCNNGC | 6 cut(s) | 303, 1904, 2189, 2278, 3623, 4025 |
| BstDSI | CCRYGG | 2 cut(s) | 3468, 3875 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2620 |
| BstFNI | CGCG | 5 cut(s) | 112, 1355, 3203, 3877, 4537 |
| BstHHI | GCGC | 2 cut(s) | 114, 4539 |
| BstMAI | GTCTC | 6 cut(s) | 321, 1252, 2056, 2342, 2684, 3586 |
| BstMCI | CGRYCG | 1 cut(s) | 4363 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 311, 430, 1622, 2725, 2737, 3206, 3829 |
| BstNI | CCWGG | 5 cut(s) | 987, 1554, 2871, 3096, 4582 |
| BstNSI | RCATGY | 4 cut(s) | 1855, 2997, 3187, 4027 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 333, 2843, 4203 |
| BstSCI | CCNGG | 5 cut(s) | 985, 1552, 2869, 3094, 4580 |
| BstSFI | CTRYAG | 2 cut(s) | 2925, 4281 |
| BstSLI | GKGCMC | 2 cut(s) | 4105, 4633 |
| BstSNI | TACGTA | 1 cut(s) | 902 |
| BstUI | CGCG | 5 cut(s) | 112, 1355, 3203, 3877, 4537 |
| BstV1I | GCAGC | 4 cut(s) | 771, 2303, 2616, 2715 |
| BstV2I | GAAGAC | 3 cut(s) | 391, 1665, 4213 |
| BstX2I | RGATCY | 5 cut(s) | 16, 1208, 1918, 1972, 3256 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1130, 2348, 3485 |
| BstYI | RGATCY | 5 cut(s) | 16, 1208, 1918, 1972, 3256 |
| BsuI | GTATCC | 2 cut(s) | 3534, 4377 |
| BsuRI | GGCC | 5 cut(s) | 1182, 3173, 3832, 3880, 4580 |
| BtgI | CCRYGG | 2 cut(s) | 3468, 3875 |
| BtgZI | GCGATG | 1 cut(s) | 1336 |
| BtsI | GCAGTG | 2 cut(s) | 2100, 4623 |
| BveI | ACCTGC | 1 cut(s) | 1557 |
| Cac8I | GCNNGC | 6 cut(s) | 303, 1904, 2189, 2278, 3623, 4025 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2870 |
| CfoI | GCGC | 2 cut(s) | 114, 4539 |
| Cfr10I | RCCGGY | 1 cut(s) | 4362 |
| Cfr13I | GGNCC | 6 cut(s) | 209, 937, 983, 2211, 3475, 3548 |
| Cfr42I | CCGCGG | 1 cut(s) | 3878 |
| CseI | GACGC | 3 cut(s) | 482, 3036, 3608 |
| CspAI | ACCGGT | 1 cut(s) | 4362 |
| DraI | TTTAAA | 3 cut(s) | 1366, 2634, 4485 |
| EaeI | YGGCCR | 3 cut(s) | 3171, 3878, 4578 |
| Eam1104I | CTCTTC | 5 cut(s) | 7, 228, 1250, 1542, 1974 |
| EarI | CTCTTC | 5 cut(s) | 7, 228, 1250, 1542, 1974 |
| Ecl136II | GAGCTC | 1 cut(s) | 1093 |
| Eco105I | TACGTA | 1 cut(s) | 902 |
| Eco130I | CCWWGG | 4 cut(s) | 1155, 2485, 3468, 3663 |
| Eco24I | GRGCYC | 1 cut(s) | 1095 |
| Eco47I | GGWCC | 6 cut(s) | 209, 937, 983, 2211, 3475, 3548 |
| Eco53kI | GAGCTC | 1 cut(s) | 1093 |
| Eco57I | CTGAAG | 5 cut(s) | 504, 1101, 2060, 2171, 2847 |
| Eco88I | CYCGRG | 2 cut(s) | 2687, 3701 |
| EcoICRI | GAGCTC | 1 cut(s) | 1093 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2620 |
| EcoRI | GAATTC | 1 cut(s) | 2818 |
| EcoRII | CCWGG | 5 cut(s) | 985, 1552, 2869, 3094, 4580 |
| EcoT14I | CCWWGG | 4 cut(s) | 1155, 2485, 3468, 3663 |
| EcoT22I | ATGCAT | 3 cut(s) | 1500, 3312, 4476 |
| EcoT38I | GRGCYC | 1 cut(s) | 1095 |
| ErhI | CCWWGG | 4 cut(s) | 1155, 2485, 3468, 3663 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 462, 494, 807, 839, 1518, 1550, 4026, 4058 |
| FaqI | GGGAC | 4 cut(s) | 2224, 2861, 4202, 4339 |
| FbaI | TGATCA | 2 cut(s) | 3022, 3924 |
| FblI | GTMKAC | 2 cut(s) | 1946, 4639 |
| Fnu4HI | GCNGC | 9 cut(s) | 141, 760, 1864, 2317, 2605, 2729, 3201, 3349, 3878 |
| FriOI | GRGCYC | 1 cut(s) | 1095 |
| Fsp4HI | GCNGC | 9 cut(s) | 141, 760, 1864, 2317, 2605, 2729, 3201, 3349, 3878 |
| GlaI | GCGC | 2 cut(s) | 113, 4538 |
| GluI | GCNGC | 9 cut(s) | 141, 760, 1864, 2317, 2605, 2729, 3201, 3349, 3878 |
| GsuI | CTGGAG | 5 cut(s) | 1935, 2213, 2423, 2892, 3117 |
| HaeIII | GGCC | 5 cut(s) | 1182, 3173, 3832, 3880, 4580 |
| HapII | CCGG | 6 cut(s) | 1277, 1743, 1829, 3254, 3890, 4363 |
| HgaI | GACGC | 3 cut(s) | 482, 3036, 3608 |
| HhaI | GCGC | 2 cut(s) | 114, 4539 |
| Hin1I | GRCGYC | 2 cut(s) | 1943, 3600 |
| Hin6I | GCGC | 2 cut(s) | 112, 4537 |
| HinP1I | GCGC | 2 cut(s) | 112, 4537 |
| HincII | GTYRAC | 1 cut(s) | 1947 |
| HindII | GTYRAC | 1 cut(s) | 1947 |
| HindIII | AAGCTT | 2 cut(s) | 2185, 2738 |
| HpaII | CCGG | 6 cut(s) | 1277, 1743, 1829, 3254, 3890, 4363 |
| HphI | GGTGA | 6 cut(s) | 556, 611, 1072, 1923, 2012, 3448 |
| Hpy166II | GTNNAC | 9 cut(s) | 864, 937, 1672, 1735, 1931, 1947, 2020, 3900, 4640 |
| Hpy8I | GTNNAC | 9 cut(s) | 864, 937, 1672, 1735, 1931, 1947, 2020, 3900, 4640 |
| Hpy99I | CGWCG | 3 cut(s) | 1621, 1948, 3602 |
| HpyCH4III | ACNGT | 6 cut(s) | 861, 1427, 1796, 2842, 3433, 3740 |
| HpyCH4IV | ACGT | 7 cut(s) | 901, 1340, 1561, 1943, 2760, 4440, 4656 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 311, 430, 1622, 2725, 2737, 3206, 3829 |
| HpySE526I | ACGT | 7 cut(s) | 901, 1340, 1561, 1943, 2760, 4440, 4656 |
| Hsp92I | GRCGYC | 2 cut(s) | 1943, 3600 |
| HspAI | GCGC | 2 cut(s) | 112, 4537 |
| Kpn2I | TCCGGA | 3 cut(s) | 1276, 1742, 3889 |
| Ksp22I | TGATCA | 2 cut(s) | 3022, 3924 |
| KspI | CCGCGG | 1 cut(s) | 3878 |
| LguI | GCTCTTC | 1 cut(s) | 1542 |
| LmnI | GCTCC | 4 cut(s) | 397, 1899, 2194, 2582 |
| Lsp1109I | GCAGC | 4 cut(s) | 771, 2303, 2616, 2715 |
| LweI | GCATC | 9 cut(s) | 433, 517, 1066, 1485, 2305, 3319, 3502, 4461, 4508 |
| MaeII | ACGT | 7 cut(s) | 901, 1340, 1561, 1943, 2760, 4440, 4656 |
| MaeIII | GTNAC | 9 cut(s) | 617, 784, 1409, 1468, 1770, 2756, 2836, 2989, 3769 |
| MbiI | CCGCTC | 2 cut(s) | 143, 433 |
| MfeI | CAATTG | 7 cut(s) | 204, 228, 950, 1677, 2238, 2415, 2723 |
| MflI | RGATCY | 5 cut(s) | 16, 1208, 1918, 1972, 3256 |
| MhlI | GDGCHC | 5 cut(s) | 402, 1095, 3825, 4105, 4633 |
| MlsI | TGGCCA | 1 cut(s) | 4580 |
| MluNI | TGGCCA | 1 cut(s) | 4580 |
| MmeI | TCCRAC | 1 cut(s) | 2877 |
| Mox20I | TGGCCA | 1 cut(s) | 4580 |
| Mph1103I | ATGCAT | 3 cut(s) | 1500, 3312, 4476 |
| MroI | TCCGGA | 3 cut(s) | 1276, 1742, 3889 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1530, 2115, 3321, 4253, 4307 |
| MscI | TGGCCA | 1 cut(s) | 4580 |
| MslI | CAYNNNNRTG | 7 cut(s) | 135, 624, 869, 2205, 3683, 4028, 4626 |
| Msp20I | TGGCCA | 1 cut(s) | 4580 |
| MspA1I | CMGCKG | 2 cut(s) | 1126, 3877 |
| MspCI | CTTAAG | 2 cut(s) | 2557, 2617 |
| MspI | CCGG | 6 cut(s) | 1277, 1743, 1829, 3254, 3890, 4363 |
| MspR9I | CCNGG | 5 cut(s) | 987, 1554, 2871, 3096, 4582 |
| MunI | CAATTG | 7 cut(s) | 204, 228, 950, 1677, 2238, 2415, 2723 |
| Mva1269I | GAATGC | 2 cut(s) | 1547, 2088 |
| MvaI | CCWGG | 5 cut(s) | 987, 1554, 2871, 3096, 4582 |
| MvnI | CGCG | 5 cut(s) | 112, 1355, 3203, 3877, 4537 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 311, 430, 1622, 2725, 2737, 3206, 3829 |
| NcoI | CCATGG | 1 cut(s) | 3468 |
| NlaIV | GGNNCC | 6 cut(s) | 1968, 2212, 3258, 3318, 3968, 4102 |
| NmuCI | GTSAC | 4 cut(s) | 617, 1409, 2836, 2989 |
| NsiI | ATGCAT | 3 cut(s) | 1500, 3312, 4476 |
| NspI | RCATGY | 4 cut(s) | 1855, 2997, 3187, 4027 |
| NspV | TTCGAA | 2 cut(s) | 830, 3398 |
| OliI | CACNNNNGTG | 1 cut(s) | 3683 |
| PaeI | GCATGC | 1 cut(s) | 4027 |
| PaeR7I | CTCGAG | 2 cut(s) | 2687, 3701 |
| PciI | ACATGT | 2 cut(s) | 2993, 3183 |
| PciSI | GCTCTTC | 1 cut(s) | 1542 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3603 |
| PctI | GAATGC | 2 cut(s) | 1547, 2088 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1530, 2115, 3321, 4253, 4307 |
| PflFI | GACNNNGTC | 1 cut(s) | 3578 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2030 |
| PfoI | TCCNGGA | 1 cut(s) | 3094 |
| PinAI | ACCGGT | 1 cut(s) | 4362 |
| PkrI | GCNGC | 9 cut(s) | 142, 761, 1865, 2318, 2606, 2730, 3202, 3350, 3879 |
| Ppu21I | YACGTR | 2 cut(s) | 902, 2761 |
| PscI | ACATGT | 2 cut(s) | 2993, 3183 |
| PshAI | GACNNNNGTC | 3 cut(s) | 333, 2843, 4203 |
| PshBI | ATTAAT | 1 cut(s) | 2952 |
| Psp124BI | GAGCTC | 1 cut(s) | 1095 |
| Psp1406I | AACGTT | 1 cut(s) | 1340 |
| Psp6I | CCWGG | 5 cut(s) | 985, 1552, 2869, 3094, 4580 |
| PspGI | CCWGG | 5 cut(s) | 985, 1552, 2869, 3094, 4580 |
| PspN4I | GGNNCC | 6 cut(s) | 1968, 2212, 3258, 3318, 3968, 4102 |
| PspPI | GGNCC | 6 cut(s) | 209, 937, 983, 2211, 3475, 3548 |
| PspXI | VCTCGAGB | 1 cut(s) | 3701 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3379, 3411 |
| PstI | CTGCAG | 1 cut(s) | 4285 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2870 |
| PsuI | RGATCY | 5 cut(s) | 16, 1208, 1918, 1972, 3256 |
| PsyI | GACNNNGTC | 1 cut(s) | 3578 |
| PvuII | CAGCTG | 1 cut(s) | 1126 |
| RseI | CAYNNNNRTG | 7 cut(s) | 135, 624, 869, 2205, 3683, 4028, 4626 |
| SacI | GAGCTC | 1 cut(s) | 1095 |
| SacII | CCGCGG | 1 cut(s) | 3878 |
| SalI | GTCGAC | 1 cut(s) | 1945 |
| SapI | GCTCTTC | 1 cut(s) | 1542 |
| SatI | GCNGC | 9 cut(s) | 141, 760, 1864, 2317, 2605, 2729, 3201, 3349, 3878 |
| Sau96I | GGNCC | 6 cut(s) | 209, 937, 983, 2211, 3475, 3548 |
| ScrFI | CCNGG | 5 cut(s) | 987, 1554, 2871, 3096, 4582 |
| SduI | GDGCHC | 5 cut(s) | 402, 1095, 3825, 4105, 4633 |
| SfaNI | GCATC | 9 cut(s) | 433, 517, 1066, 1485, 2305, 3319, 3502, 4461, 4508 |
| SfcI | CTRYAG | 2 cut(s) | 2925, 4281 |
| Sfr274I | CTCGAG | 2 cut(s) | 2687, 3701 |
| Sfr303I | CCGCGG | 1 cut(s) | 3878 |
| SfuI | TTCGAA | 2 cut(s) | 830, 3398 |
| SgrBI | CCGCGG | 1 cut(s) | 3878 |
| SinI | GGWCC | 6 cut(s) | 209, 937, 983, 2211, 3475, 3548 |
| SlaI | CTCGAG | 2 cut(s) | 2687, 3701 |
| SmiI | ATTTAAAT | 1 cut(s) | 2634 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 135, 624, 869, 2205, 3683, 4028, 4626 |
| SnaBI | TACGTA | 1 cut(s) | 902 |
| SphI | GCATGC | 1 cut(s) | 4027 |
| SsiI | CCGC | 9 cut(s) | 141, 433, 1864, 3201, 3348, 3688, 3875, 3877, 4535 |
| SstI | GAGCTC | 1 cut(s) | 1095 |
| StyD4I | CCNGG | 5 cut(s) | 985, 1552, 2869, 3094, 4580 |
| StyI | CCWWGG | 4 cut(s) | 1155, 2485, 3468, 3663 |
| SwaI | ATTTAAAT | 1 cut(s) | 2634 |
| TaaI | ACNGT | 6 cut(s) | 861, 1427, 1796, 2842, 3433, 3740 |
| TaiI | ACGT | 7 cut(s) | 904, 1343, 1564, 1946, 2763, 4443, 4659 |
| TatI | WGTACW | 5 cut(s) | 856, 861, 1441, 2777, 4050 |
| TauI | GCSGC | 5 cut(s) | 143, 1866, 3203, 3351, 3880 |
| TseFI | GTSAC | 4 cut(s) | 617, 1409, 2836, 2989 |
| TseI | GCWGC | 4 cut(s) | 759, 2316, 2604, 2728 |
| Tsp45I | GTSAC | 4 cut(s) | 617, 1409, 2836, 2989 |
| TspGWI | ACGGA | 5 cut(s) | 1297, 2733, 2804, 3482, 3595 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3578 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2030 |
| Vha464I | CTTAAG | 2 cut(s) | 2557, 2617 |
| VpaK11BI | GGWCC | 6 cut(s) | 209, 937, 983, 2211, 3475, 3548 |
| VspI | ATTAAT | 1 cut(s) | 2952 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2620 |
| XapI | RAATTY | 6 cut(s) | 118, 533, 2539, 2818, 3105, 3650 |
| XbaI | TCTAGA | 2 cut(s) | 1010, 3353 |
| XceI | RCATGY | 4 cut(s) | 1855, 2997, 3187, 4027 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3466 |
| XhoI | CTCGAG | 2 cut(s) | 2687, 3701 |
| XmiI | GTMKAC | 2 cut(s) | 1946, 4639 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1530, 2115, 3321, 4253, 4307 |
| ZraI | GACGTC | 1 cut(s) | 1944 |
| Zsp2I | ATGCAT | 3 cut(s) | 1500, 3312, 4476 |