Rmu_sc0001924.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001924.1
OG0000129
Physical Location & Seq
Forward (+)
1 .. 1399
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001924.1_g000001.1.cds

Sequence Viewer

Length: 942 bp
aaaggcgatcgctttgagaaagcatttgagaagcatcaagagcggcatccagacaaattgcagaggtggaaagacgctctttttcaagtaggcaatctctctggatggcatctgaaagatgggtacgaatccaaagtcattcacgaaattgttgaaaagattttcaccgagttaaatcaaacaatcacaatatctgaggatttagttgggatggattctcacctgaatgaaatgctttcgtacttagacattggatgtcctgatgttcgtatcatagggatttgtggtatgggtggtatcggtaagacaactattgcacaagtggtttttgaaagggtacaggctcagtttgaaggttgcagctttcttgagaatgttagagatgtaactgaaaagcaaggtgcggttcatttacaagagcaacttctttcgaatttgctgaaatgtaatgtaaatgtacagaacactagaatgggaaaaaatataatgaggcagagactaagtactaaaatggttcttatcattcttgatgatgtggaccaagaagaacaattggaagcattgtgtgatagggaatcgtttggtccagggagtagaatcatcataacttctagaaatgaacatttgctcaatgcagttgaaggagataaagtgtacaaggtgaatccattaagtgatgctgaagctcttcagcttttcagtatgaaagccttcaagaaagaccagctggttggaaaagaaattctgaagctatccaaagaattgttgaaatatgctaatggccttccactagctattgaagttttgggttgtcatgttaagggtagaggggtagagttatggtcaagtgcattggaaagacttaaagaaagtcctgataaagaaatttttaatgttctcaagactttgatatacaggttctcctggacaaatctatggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

313

Amino Acids

35.68

Weight (kDa)

6.13

Isoelectric Point (pI)

28.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 43
AciI CCGC 2 cut(s) 43, 404
AcsI RAATTY 3 cut(s) 433, 741, 885
AcuI CTGAAG 3 cut(s) 674, 702, 767
AfaI GTAC 6 cut(s) 125, 242, 339, 459, 505, 656
AgsI TTSAA 8 cut(s) 86, 155, 332, 353, 641, 715, 769, 800
AjnI CCWGG 2 cut(s) 586, 923
AluBI AGCT 6 cut(s) 363, 686, 694, 727, 751, 794
AluI AGCT 6 cut(s) 363, 686, 694, 727, 751, 794
Alw26I GTCTC 1 cut(s) 490
AoxI GGCC 1 cut(s) 781
ApeKI GCWGC 1 cut(s) 360
ApoI RAATTY 3 cut(s) 433, 741, 885
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AsiSI GCGATCGC 1 cut(s) 10
Asp700I GAANNNNTTC 2 cut(s) 687, 710
AspS9I GGNCC 2 cut(s) 538, 584
AsuHPI GGTGA 3 cut(s) 157, 212, 673
AsuII TTCGAA 1 cut(s) 431
AvaII GGWCC 2 cut(s) 538, 584
BbvI GCAGC 1 cut(s) 372
BccI CCATC 3 cut(s) 99, 113, 205
BciT130I CCWGG 2 cut(s) 588, 925
BcoDI GTCTC 1 cut(s) 490
BfaI CTAG 3 cut(s) 468, 612, 791
BisI GCNGC 2 cut(s) 44, 361
BlsI GCNGC 2 cut(s) 45, 362
BmcAI AGTACT 1 cut(s) 505
Bme1390I CCNGG 2 cut(s) 588, 925
Bme18I GGWCC 2 cut(s) 538, 584
BmgT120I GGNCC 2 cut(s) 538, 584
BmrFI CCNGG 2 cut(s) 588, 925
BmsI GCATC 4 cut(s) 43, 55, 118, 667
Bpu14I TTCGAA 1 cut(s) 431
BpuEI CTTGAG 2 cut(s) 389, 884
BsaJI CCNNGG 1 cut(s) 587
BsaXI ACNNNNNCTCC 4 cut(s) 636, 666, 905, 935
BseBI CCWGG 2 cut(s) 588, 925
BseDI CCNNGG 1 cut(s) 587
BseGI GGATG 4 cut(s) 46, 110, 216, 260
BseMII CTCAG 2 cut(s) 186, 359
BseXI GCAGC 1 cut(s) 372
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 1 cut(s) 783
BsiEI CGRYCG 1 cut(s) 10
BsmAI GTCTC 1 cut(s) 490
BsnI GGCC 1 cut(s) 783
Bsp119I TTCGAA 1 cut(s) 431
Bsp1407I TGTACA 2 cut(s) 457, 654
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 2 cut(s) 43, 404
BspANI GGCC 1 cut(s) 783
BspCNI CTCAG 2 cut(s) 187, 358
BspQI GCTCTTC 1 cut(s) 693
BspT104I TTCGAA 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 43
BsrGI TGTACA 2 cut(s) 457, 654
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 1 cut(s) 7
Bst2UI CCWGG 2 cut(s) 588, 925
Bst6I CTCTTC 1 cut(s) 693
BstAUI TGTACA 2 cut(s) 457, 654
BstBI TTCGAA 1 cut(s) 431
BstDEI CTNAG 4 cut(s) 195, 244, 345, 500
BstF5I GGATG 4 cut(s) 46, 110, 216, 260
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 2 cut(s) 588, 925
BstSCI CCNGG 2 cut(s) 586, 923
BstV1I GCAGC 1 cut(s) 372
BstXI CCANNNNNNTGG 1 cut(s) 731
BsuRI GGCC 1 cut(s) 783
BtsCI GGATG 4 cut(s) 46, 110, 216, 260
Cfr13I GGNCC 2 cut(s) 538, 584
CseI GACGC 1 cut(s) 83
Csp6I GTAC 6 cut(s) 124, 241, 338, 458, 504, 655
CviAII CATG 1 cut(s) 815
CviJI RGCY 9 cut(s) 344, 363, 686, 694, 710, 727, 751, 783, 794
CviKI_1 RGCY 9 cut(s) 344, 363, 686, 694, 710, 727, 751, 783, 794
CviQI GTAC 6 cut(s) 124, 241, 338, 458, 504, 655
DdeI CTNAG 4 cut(s) 195, 244, 345, 500
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
Eco47I GGWCC 2 cut(s) 538, 584
Eco57I CTGAAG 3 cut(s) 674, 702, 767
EcoRII CCWGG 2 cut(s) 586, 923
FaeI CATG 1 cut(s) 818
FalI AAGNNNNNCTT 4 cut(s) 63, 95, 408, 440
FatI CATG 1 cut(s) 814
Fnu4HI GCNGC 2 cut(s) 44, 361
FokI GGATG 4 cut(s) 33, 117, 223, 267
Fsp4HI GCNGC 2 cut(s) 44, 361
FspBI CTAG 3 cut(s) 468, 612, 791
GluI GCNGC 2 cut(s) 44, 361
HaeIII GGCC 1 cut(s) 783
HgaI GACGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 818
HinfI GANTC 5 cut(s) 128, 215, 575, 597, 664
HphI GGTGA 3 cut(s) 157, 212, 673
Hpy166II GTNNAC 2 cut(s) 538, 655
Hpy188I TCNGA 3 cut(s) 114, 196, 747
Hpy8I GTNNAC 2 cut(s) 538, 655
HpyAV CCTTC 4 cut(s) 347, 635, 721, 794
HpyCH4V TGCA 5 cut(s) 61, 317, 360, 635, 851
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 4 cut(s) 195, 244, 345, 500
Hsp92II CATG 1 cut(s) 818
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 693
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 4 cut(s) 43, 55, 118, 667
MaeI CTAG 3 cut(s) 468, 612, 791
MaeIII GTNAC 1 cut(s) 385
MalI GATC 1 cut(s) 9
MbiI CCGCTC 1 cut(s) 43
MboI GATC 1 cut(s) 7
MboII GAAGA 2 cut(s) 557, 680
MfeI CAATTG 1 cut(s) 551
MluCI AATT 7 cut(s) 56, 147, 433, 551, 741, 761, 885
MmeI TCCRAC 1 cut(s) 712
MnlI CCTC 4 cut(s) 57, 190, 483, 821
MroXI GAANNNNTTC 2 cut(s) 687, 710
MseI TTAA 5 cut(s) 173, 671, 819, 864, 891
MslI CAYNNNNRTG 2 cut(s) 225, 470
MspA1I CMGCKG 1 cut(s) 727
MspR9I CCNGG 2 cut(s) 588, 925
MunI CAATTG 1 cut(s) 551
MvaI CCWGG 2 cut(s) 588, 925
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 818
NspV TTCGAA 1 cut(s) 431
PciSI GCTCTTC 1 cut(s) 693
PdmI GAANNNNTTC 2 cut(s) 687, 710
PfeI GAWTC 5 cut(s) 128, 215, 575, 597, 664
PfoI TCCNGGA 1 cut(s) 923
PkrI GCNGC 2 cut(s) 45, 362
Ple19I CGATCG 1 cut(s) 10
Psp6I CCWGG 2 cut(s) 586, 923
PspGI CCWGG 2 cut(s) 586, 923
PspPI GGNCC 2 cut(s) 538, 584
PvuI CGATCG 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 727
RgaI GCGATCGC 1 cut(s) 10
RsaI GTAC 6 cut(s) 125, 242, 339, 459, 505, 656
RsaNI GTAC 6 cut(s) 124, 241, 338, 458, 504, 655
RseI CAYNNNNRTG 2 cut(s) 225, 470
SapI GCTCTTC 1 cut(s) 693
SaqAI TTAA 5 cut(s) 173, 671, 819, 864, 891
SatI GCNGC 2 cut(s) 44, 361
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 2 cut(s) 538, 584
ScaI AGTACT 1 cut(s) 505
ScrFI CCNGG 2 cut(s) 588, 925
SfaAI GCGATCGC 1 cut(s) 10
SfaNI GCATC 4 cut(s) 43, 55, 118, 667
SfuI TTCGAA 1 cut(s) 431
SgfI GCGATCGC 1 cut(s) 10
SinI GGWCC 2 cut(s) 538, 584
SmiMI CAYNNNNRTG 2 cut(s) 225, 470
SmlI CTYRAG 2 cut(s) 368, 899
SmoI CTYRAG 2 cut(s) 368, 899
Sse9I AATT 7 cut(s) 56, 147, 433, 551, 741, 761, 885
SsiI CCGC 2 cut(s) 43, 404
SspMI CTAG 3 cut(s) 468, 612, 791
StyD4I CCNGG 2 cut(s) 586, 923
TaqI TCGA 1 cut(s) 431
TasI AATT 7 cut(s) 56, 147, 433, 551, 741, 761, 885
TatI WGTACW 3 cut(s) 457, 503, 654
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 5 cut(s) 128, 215, 575, 597, 664
Tru1I TTAA 5 cut(s) 173, 671, 819, 864, 891
Tru9I TTAA 5 cut(s) 173, 671, 819, 864, 891
TseI GCWGC 1 cut(s) 360
TspDTI ATGAA 4 cut(s) 243, 398, 633, 719
VpaK11BI GGWCC 2 cut(s) 538, 584
XapI RAATTY 3 cut(s) 433, 741, 885
XbaI TCTAGA 1 cut(s) 611
XmnI GAANNNNTTC 2 cut(s) 687, 710
XspI CTAG 3 cut(s) 468, 612, 791
ZrmI AGTACT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.