Rroxscaffold_3G00219820

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000129
Physical Location & Seq
Reverse (-)
2000083 .. 2008998
8916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219820.1

Sequence Viewer

Length: 624 bp
ATGAGATTATCCCTGTACTTGATCGGAGTAAGGGAGATATCTTTCATTCTAGGCATGAAGAATCTAAAGTATATATCCTGCGAAGGATGTAAATGTCTAGTTCCAGACTCATGCAAAGTTCTGGCTTCGTTACCGAATTTGATAGAGCTAGACTTAAGTTATTGCAATCTGATGGATGGAGCAATTCTCAATGATTTTAGCAGTCTAATCTCCTTAAGAAGGTTAGATTTAAATGGTAATTGCTTTGTGCGATTGCCTGAAAGTATCTCTCAACTCTCAAATCTCGAGACTCTGGACTTGAGTAATTGCAGACAGCTTCAATTGCTGCCCAAGAAGCTTCCGTTAAGTCTTGGTTACGTGTATGCACAAGATTGTACTTCACTGACGGATTACCCAAATCAAATCAAAGTATTGAATTCATCGGAGTCGGGAGTGACTGTTATCAATTCCCTCAATTCTTCAGAACCTGGAGTCCCACAAAGTTCCGAAATGTTGGATAATTTAAGAGATGAGTGGGAATCTACAGACCTGTGTTCCACAATGTATATTAATCCAGACAATGTGGGGCAATCTTCCCAACTGCGTGTGACATGTAAGCATACAGAGGGGAAACAACGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

207

Amino Acids

23.06

Weight (kDa)

4.94

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 41 - 140 6e-10 Leucine-rich repeat region
LRR_8 PF13855 66 - 104 4.2e-06 Leucine rich repeat
LRR_4 PF12799 71 - 107 8.2e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 136, 415
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 2 cut(s) 17, 376
AfiI CCNNNNNNNGG 1 cut(s) 219
AflII CTTAAG 2 cut(s) 154, 214
AflIII ACRYGT 2 cut(s) 357, 590
AgsI TTSAA 2 cut(s) 320, 415
AjnI CCWGG 1 cut(s) 466
AloI GAACNNNNNNTCC 2 cut(s) 456, 488
AluBI AGCT 3 cut(s) 148, 316, 337
AluI AGCT 3 cut(s) 148, 316, 337
Alw26I GTCTC 1 cut(s) 281
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 2 cut(s) 136, 415
AseI ATTAAT 1 cut(s) 549
AvaI CYCGRG 1 cut(s) 284
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 166, 170
BciT130I CCWGG 1 cut(s) 468
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 3 cut(s) 50, 98, 149
BfmI CTRYAG 1 cut(s) 522
BfrI CTTAAG 2 cut(s) 154, 214
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
Bme1390I CCNGG 1 cut(s) 468
BmeT110I CYCGRG 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 468
BplI GAGNNNNNCTC 2 cut(s) 171, 203
BpmI CTGGAG 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 468
BseGI GGATG 2 cut(s) 92, 181
BseLI CCNNNNNNNGG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 284
Bsp143I GATC 1 cut(s) 21
BspTI CTTAAG 2 cut(s) 154, 214
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 1 cut(s) 439
BstAFI CTTAAG 2 cut(s) 154, 214
BstBAI YACGTR 1 cut(s) 358
BstENI CCTNNNNNAGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 92, 181
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 322, 334
BstNI CCWGG 1 cut(s) 468
BstNSI RCATGY 1 cut(s) 594
BstSCI CCNGG 1 cut(s) 466
BstSFI CTRYAG 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 312
BtsCI GGATG 2 cut(s) 92, 181
BtsIMutI CAGTG 1 cut(s) 380
CaiI CAGNNNCTG 1 cut(s) 467
Csp6I GTAC 2 cut(s) 16, 375
CviAII CATG 3 cut(s) 55, 111, 591
CviJI RGCY 4 cut(s) 125, 148, 316, 337
CviKI_1 RGCY 4 cut(s) 125, 148, 316, 337
CviQI GTAC 2 cut(s) 16, 375
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
DraI TTTAAA 1 cut(s) 231
Eco32I GATATC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 466
EcoRV GATATC 1 cut(s) 39
FaeI CATG 3 cut(s) 58, 114, 594
FaiI YATR 9 cut(s) 56, 72, 74, 112, 363, 546, 592, 600, 622
FaqI GGGAC 1 cut(s) 458
FatI CATG 3 cut(s) 54, 110, 590
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 2 cut(s) 99, 188
Fsp4HI GCNGC 1 cut(s) 326
FspBI CTAG 3 cut(s) 50, 98, 149
GluI GCNGC 1 cut(s) 326
GsuI CTGGAG 1 cut(s) 489
Hin1II CATG 3 cut(s) 58, 114, 594
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 6 cut(s) 61, 107, 289, 425, 471, 518
Hpy188I TCNGA 5 cut(s) 26, 171, 424, 463, 487
Hpy188III TCNNGA 6 cut(s) 104, 284, 286, 293, 429, 554
HpyAV CCTTC 2 cut(s) 77, 213
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4IV ACGT 2 cut(s) 357, 616
HpyCH4V TGCA 4 cut(s) 114, 165, 309, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 322, 334
HpySE526I ACGT 2 cut(s) 357, 616
Hsp92II CATG 3 cut(s) 58, 114, 594
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 312
MaeI CTAG 3 cut(s) 50, 98, 149
MaeII ACGT 2 cut(s) 357, 616
MaeIII GTNAC 4 cut(s) 129, 353, 433, 586
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 3 cut(s) 70, 450, 564
MfeI CAATTG 1 cut(s) 320
MluCI AATT 9 cut(s) 136, 183, 238, 304, 320, 415, 445, 454, 499
MlyI GAGTC 4 cut(s) 101, 283, 434, 480
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 2 cut(s) 461, 598
MseI TTAA 6 cut(s) 155, 215, 230, 344, 503, 549
MspCI CTTAAG 2 cut(s) 154, 214
MspR9I CCNGG 1 cut(s) 468
MunI CAATTG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 2 cut(s) 322, 334
NdeII GATC 1 cut(s) 21
NlaIII CATG 3 cut(s) 58, 114, 594
NmuCI GTSAC 2 cut(s) 433, 586
NspI RCATGY 1 cut(s) 594
PaeR7I CTCGAG 1 cut(s) 284
PciI ACATGT 1 cut(s) 590
PfeI GAWTC 2 cut(s) 61, 518
PkrI GCNGC 1 cut(s) 327
PleI GAGTC 4 cut(s) 101, 283, 433, 479
PpsI GAGTC 4 cut(s) 101, 283, 433, 479
Ppu21I YACGTR 1 cut(s) 358
PscI ACATGT 1 cut(s) 590
PshBI ATTAAT 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PstNI CAGNNNCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 17, 376
RsaNI GTAC 2 cut(s) 16, 375
SaqAI TTAA 6 cut(s) 155, 215, 230, 344, 503, 549
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 1 cut(s) 21
SchI GAGTC 4 cut(s) 101, 283, 434, 480
ScrFI CCNGG 1 cut(s) 468
SetI ASST 8 cut(s) 150, 224, 318, 339, 360, 469, 531, 619
SfcI CTRYAG 1 cut(s) 522
Sfr274I CTCGAG 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 284
SmiI ATTTAAAT 1 cut(s) 231
SmlI CTYRAG 4 cut(s) 154, 214, 284, 298
SmoI CTYRAG 4 cut(s) 154, 214, 284, 298
Sse9I AATT 9 cut(s) 136, 183, 238, 304, 320, 415, 445, 454, 499
SspMI CTAG 3 cut(s) 50, 98, 149
StyD4I CCNGG 1 cut(s) 466
SwaI ATTTAAAT 1 cut(s) 231
TaaI ACNGT 1 cut(s) 439
TaiI ACGT 2 cut(s) 360, 619
TaqI TCGA 1 cut(s) 285
TasI AATT 9 cut(s) 136, 183, 238, 304, 320, 415, 445, 454, 499
TatI WGTACW 2 cut(s) 15, 374
TfiI GAWTC 2 cut(s) 61, 518
Tru1I TTAA 6 cut(s) 155, 215, 230, 344, 503, 549
Tru9I TTAA 6 cut(s) 155, 215, 230, 344, 503, 549
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 2 cut(s) 433, 586
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 2 cut(s) 433, 586
TspDTI ATGAA 3 cut(s) 34, 71, 408
TspGWI ACGGA 2 cut(s) 330, 401
TspRI CASTG 1 cut(s) 387
Vha464I CTTAAG 2 cut(s) 154, 214
VspI ATTAAT 1 cut(s) 549
XagI CCTNNNNNAGG 1 cut(s) 217
XapI RAATTY 2 cut(s) 136, 415
XceI RCATGY 1 cut(s) 594
XhoI CTCGAG 1 cut(s) 284
XspI CTAG 3 cut(s) 50, 98, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.