Rw7G041540

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000129
Physical Location & Seq
Forward (+)
64911906 .. 64913070
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041540.1

Sequence Viewer

Length: 1065 bp
ATGGGAAAAGACATAATTAAGCATAGACTATCTACTAAGAGGGTGCTTATTGTTCTTGACGATGTGGGTCAACATAAACAATTGGAAACACTGTGTGATCGTACATGGTTTGGTCCAGGGAGTAGAGTCATCATAACATCCCGAGATGAACACTTGATCAGTGCATTTAAAGCAGACAAAGTATACAAGGTGAATGCATTAACTGATCCTGAAGCTTTGGAACTCTTTAGTTTGAAAGCCTTCAAGGATAACGAGGTTGGAGAAGATTTTCTCAAGCTATCCAAGGAATTTTTGAAATATGCTAATGGCCTTCCATTAGCTATTGAAGTTTTGGGATCGTCTGTTTGTGGTAGAAGTGTAGAGATATGGTCAAGTGCATTGAAGAGACTTAAAAAAAATCCTCCGAAAGATATTATTGATGTTCTTAAATTTAGTTTTGATGGATTAGAAAAAACAGAAAAGAAAACGTTTTTGGACATCGCGTGTTTCTTTAAAGGAGAGAACAAGGATCGTGTAATAAGAATACTAAATGGTTGTGACGATGACGGTGTGGAGATGGATGTACAAGTTCTTATGGACAAATCTTTGGTAACTGTATTTGGAACAAAATTGTGGATGCATGAATTGATACAAGAAATGGGTCGGGAAGTTGTTCGTCAAGAATGTCTTGAAGAGCCTGGAAAACGTAGCAGATTGTGGCTTCCAAATGAGATTATCCATGTACTTGATCGGAGTAAGGCGACGAGTGCAGTTCAAAGCATATTCCTCCAATGTCCAATAGAAGACGATGTTGTTCACTCAATTGATAATGCCTTCTCAAATATGGACAGATTGAGATTGCTCAAGATTTGGAATGTGAAGTTTTCTGGAAACGTCACATATCTTTCTAATGAGTTACAGTATCTTGATTGGCATGAGTGCCCTTTGGATTCTTTCCCATCAGACTTCCAACCGGATAAACTTGTTGAACTTCACTTGTGTTTTAGCAGCATCAAACAACTATGGAGGGGAAAAAAGGTAAGATCACAATTAATTTTATGCATGTTCATAAAGCTGATAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

354

Amino Acids

40.71

Weight (kDa)

6.72

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 5 - 84 1.6e-11 NB-ARC domain
WHD_ROQ1 PF23282 151 - 220 8.6e-17 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 183
AccII CGCG 1 cut(s) 482
AclI AACGTT 1 cut(s) 467
AclWI GGATC 3 cut(s) 200, 343, 516
AcsI RAATTY 2 cut(s) 287, 428
AcuI CTGAAG 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 95
AfaI GTAC 3 cut(s) 103, 564, 723
AgsI TTSAA 8 cut(s) 235, 244, 295, 326, 382, 671, 755, 968
AjnI CCWGG 2 cut(s) 115, 676
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AluBI AGCT 4 cut(s) 215, 277, 320, 1054
AluI AGCT 4 cut(s) 215, 277, 320, 1054
Alw26I GTCTC 1 cut(s) 379
AlwI GGATC 3 cut(s) 200, 343, 516
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 1 cut(s) 987
ApoI RAATTY 2 cut(s) 287, 428
AseI ATTAAT 1 cut(s) 1031
Asp700I GAANNNNTTC 3 cut(s) 239, 267, 651
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 923
BbsI GAAGAC 1 cut(s) 789
BbvI GCAGC 1 cut(s) 999
BccI CCATC 3 cut(s) 434, 550, 946
BciT130I CCWGG 2 cut(s) 117, 678
BclI TGATCA 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 379
BisI GCNGC 1 cut(s) 988
BlsI GCNGC 1 cut(s) 989
Bme1390I CCNGG 2 cut(s) 117, 678
Bme18I GGWCC 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 113
BmrFI CCNGG 2 cut(s) 117, 678
BmsI GCATC 2 cut(s) 606, 999
BpiI GAAGAC 1 cut(s) 789
BpuEI CTTGAG 2 cut(s) 257, 827
BsaJI CCNNGG 2 cut(s) 116, 282
BsaWI WCCGGW 1 cut(s) 952
BseBI CCWGG 2 cut(s) 117, 678
BseDI CCNNGG 2 cut(s) 116, 282
BseGI GGATG 3 cut(s) 137, 565, 621
BseSI GKGCMC 1 cut(s) 923
BseXI GCAGC 1 cut(s) 999
BsgI GTGCAG 1 cut(s) 768
Bsh1236I CGCG 1 cut(s) 482
BshFI GGCC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 953
BsmAI GTCTC 1 cut(s) 379
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 923
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 7 cut(s) 97, 156, 205, 335, 508, 727, 1022
BspANI GGCC 1 cut(s) 309
BspFNI CGCG 1 cut(s) 482
BspPI GGATC 3 cut(s) 200, 343, 516
BspQI GCTCTTC 1 cut(s) 666
BsrGI TGTACA 1 cut(s) 562
BssECI CCNNGG 2 cut(s) 116, 282
BssMI GATC 7 cut(s) 97, 156, 205, 335, 508, 727, 1022
BssNAI GTATAC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 282
Bst1107I GTATAC 1 cut(s) 184
Bst2UI CCWGG 2 cut(s) 117, 678
Bst4CI ACNGT 4 cut(s) 93, 548, 595, 900
Bst6I CTCTTC 2 cut(s) 377, 666
BstAUI TGTACA 1 cut(s) 562
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 137, 565, 621
BstFNI CGCG 1 cut(s) 482
BstKTI GATC 7 cut(s) 100, 159, 208, 338, 511, 730, 1025
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 7 cut(s) 97, 156, 205, 335, 508, 727, 1022
BstMWI GCNNNNNNNGC 2 cut(s) 170, 746
BstNI CCWGG 2 cut(s) 117, 678
BstNSI RCATGY 1 cut(s) 1045
BstSCI CCNGG 2 cut(s) 115, 676
BstSLI GKGCMC 1 cut(s) 923
BstUI CGCG 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 999
BstV2I GAAGAC 1 cut(s) 789
BstZ17I GTATAC 1 cut(s) 184
BsuRI GGCC 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 463
BtsCI GGATG 3 cut(s) 137, 565, 621
BtsIMutI CAGTG 2 cut(s) 89, 166
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 3 cut(s) 102, 563, 722
CviAII CATG 5 cut(s) 105, 620, 719, 914, 1042
CviJI RGCY 8 cut(s) 215, 239, 277, 309, 320, 676, 700, 1054
CviKI_1 RGCY 8 cut(s) 215, 239, 277, 309, 320, 676, 700, 1054
CviQI GTAC 3 cut(s) 102, 563, 722
DdeI CTNAG 1 cut(s) 36
DpnI GATC 7 cut(s) 99, 158, 207, 337, 510, 729, 1024
DpnII GATC 7 cut(s) 97, 156, 205, 335, 508, 727, 1022
DraI TTTAAA 2 cut(s) 169, 493
DraIII CACNNNGTG 1 cut(s) 95
Eam1104I CTCTTC 2 cut(s) 377, 666
EarI CTCTTC 2 cut(s) 377, 666
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 115, 676
EcoT14I CCWWGG 1 cut(s) 282
EcoT22I ATGCAT 3 cut(s) 199, 621, 1043
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 5 cut(s) 108, 623, 722, 917, 1045
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FatI CATG 5 cut(s) 104, 619, 718, 913, 1041
FbaI TGATCA 1 cut(s) 156
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 988
FokI GGATG 3 cut(s) 124, 572, 628
Fsp4HI GCNGC 1 cut(s) 988
GluI GCNGC 1 cut(s) 988
HaeIII GGCC 1 cut(s) 309
HapII CCGG 1 cut(s) 953
Hin1II CATG 5 cut(s) 108, 623, 722, 917, 1045
HincII GTYRAC 1 cut(s) 71
HindII GTYRAC 1 cut(s) 71
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 2 cut(s) 126, 929
HpaII CCGG 1 cut(s) 953
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 3 cut(s) 71, 184, 796
Hpy188I TCNGA 3 cut(s) 405, 732, 943
Hpy188III TCNNGA 9 cut(s) 56, 141, 209, 644, 659, 668, 844, 867, 905
Hpy8I GTNNAC 3 cut(s) 71, 184, 796
Hpy99I CGWCG 1 cut(s) 745
HpyAV CCTTC 3 cut(s) 250, 320, 823
HpyCH4III ACNGT 4 cut(s) 93, 548, 595, 900
HpyCH4IV ACGT 3 cut(s) 467, 685, 873
HpyCH4V TGCA 6 cut(s) 164, 197, 377, 619, 749, 1041
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 746
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 3 cut(s) 467, 685, 873
Hsp92II CATG 5 cut(s) 108, 623, 722, 917, 1045
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 7 cut(s) 97, 156, 205, 335, 508, 727, 1022
LguI GCTCTTC 1 cut(s) 666
LpnPI CCDG 7 cut(s) 102, 129, 222, 663, 690, 852, 966
Lsp1109I GCAGC 1 cut(s) 999
LweI GCATC 2 cut(s) 606, 999
MaeII ACGT 3 cut(s) 467, 685, 873
MaeIII GTNAC 4 cut(s) 536, 589, 874, 894
MalI GATC 7 cut(s) 99, 158, 207, 337, 510, 729, 1024
MboI GATC 7 cut(s) 97, 156, 205, 335, 508, 727, 1022
MboII GAAGA 4 cut(s) 275, 394, 683, 794
MfeI CAATTG 2 cut(s) 80, 801
MhlI GDGCHC 1 cut(s) 923
MluCI AATT 9 cut(s) 15, 80, 287, 428, 608, 623, 801, 1028, 1032
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 2 cut(s) 238, 973
MnlI CCTC 5 cut(s) 33, 247, 411, 776, 999
Mph1103I ATGCAT 3 cut(s) 199, 621, 1043
MroXI GAANNNNTTC 3 cut(s) 239, 267, 651
MseI TTAA 7 cut(s) 18, 168, 200, 390, 426, 492, 1031
MspI CCGG 1 cut(s) 953
MspR9I CCNGG 2 cut(s) 117, 678
MunI CAATTG 2 cut(s) 80, 801
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 2 cut(s) 117, 678
MvnI CGCG 1 cut(s) 482
MwoI GCNNNNNNNGC 2 cut(s) 170, 746
NdeII GATC 7 cut(s) 97, 156, 205, 335, 508, 727, 1022
NlaIII CATG 5 cut(s) 108, 623, 722, 917, 1045
NmuCI GTSAC 2 cut(s) 536, 874
NsiI ATGCAT 3 cut(s) 199, 621, 1043
NspI RCATGY 1 cut(s) 1045
PciSI GCTCTTC 1 cut(s) 666
PctI GAATGC 1 cut(s) 199
PdmI GAANNNNTTC 3 cut(s) 239, 267, 651
PfeI GAWTC 1 cut(s) 929
PkrI GCNGC 1 cut(s) 989
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PshBI ATTAAT 1 cut(s) 1031
Psp1406I AACGTT 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 115, 676
PspGI CCWGG 2 cut(s) 115, 676
PspPI GGNCC 1 cut(s) 113
RsaI GTAC 3 cut(s) 103, 564, 723
RsaNI GTAC 3 cut(s) 102, 563, 722
SapI GCTCTTC 1 cut(s) 666
SaqAI TTAA 7 cut(s) 18, 168, 200, 390, 426, 492, 1031
SatI GCNGC 1 cut(s) 988
Sau3AI GATC 7 cut(s) 97, 156, 205, 335, 508, 727, 1022
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 2 cut(s) 117, 678
SduI GDGCHC 1 cut(s) 923
SfaNI GCATC 2 cut(s) 606, 999
SinI GGWCC 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 272, 842
SmoI CTYRAG 2 cut(s) 272, 842
Sse9I AATT 9 cut(s) 15, 80, 287, 428, 608, 623, 801, 1028, 1032
StyD4I CCNGG 2 cut(s) 115, 676
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 4 cut(s) 93, 548, 595, 900
TaiI ACGT 3 cut(s) 470, 688, 876
TasI AATT 9 cut(s) 15, 80, 287, 428, 608, 623, 801, 1028, 1032
TatI WGTACW 2 cut(s) 562, 721
TfiI GAWTC 1 cut(s) 929
Tru1I TTAA 7 cut(s) 18, 168, 200, 390, 426, 492, 1031
Tru9I TTAA 7 cut(s) 18, 168, 200, 390, 426, 492, 1031
TscAI CASTG 2 cut(s) 96, 166
TseFI GTSAC 2 cut(s) 536, 874
TseI GCWGC 1 cut(s) 987
Tsp45I GTSAC 2 cut(s) 536, 874
TspDTI ATGAA 3 cut(s) 162, 636, 1036
TspRI CASTG 2 cut(s) 96, 166
VpaK11BI GGWCC 1 cut(s) 113
VspI ATTAAT 1 cut(s) 1031
XapI RAATTY 2 cut(s) 287, 428
XceI RCATGY 1 cut(s) 1045
XmiI GTMKAC 1 cut(s) 183
XmnI GAANNNNTTC 3 cut(s) 239, 267, 651
Zsp2I ATGCAT 3 cut(s) 199, 621, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.