FvH4_5g38630

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000129
Physical Location & Seq
Forward (+)
28555425 .. 28556763
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38630.t1

Sequence Viewer

Length: 846 bp
ATGACCAACTGGGTTGAATCGGTTTGTATGAGTGAACTTGGGGATGAAGTCTTTGTACCGCAGTCTGCCTGCTGGTTTAATCCATCTTTGAAATGGGAGAGATGCATTCCACCCTTGGAAGACGAATCCACACGTGTGGTGCGAGAAAACGTTGAATCTCTTCTTCCAAGATACCTTGAGGGACTCAACAGTCGGTCTAAAATGTTCGAATTTAACCTCAGAGGAAGCCCAGGGTGGTTTGAGTTGTCTCACTGTCTCCCGGATAGTAGGTCAAATTCTGCCGCAGTGCCAATTGAGATGCCTCAAAATCTACAGAATAACAAGAAGTGGATGGGAATGGCAATACACGCTTCACTTGTGGAGGAAGTGGGACGTCAGGAGGACAGCTATTGGGTATTTGTTGCACTCAAAGCAGGTGACGGATTTGCTGACGTTTTGTTCCCAAAACCTATGCACATCAGGCCATCGTCAGAAGAACGGCATCAACTTTTGTTTTGTTATATACCGCGGGCGCAGATTCCAGAAGCGGCGTCATCTCAGACACTAACAACTGCTTGTGGGTTTTCCATCGGTATCGACAGCCCTTGTGTTAAAGTTCAAACATGTGGGTTCCGTATTGTGTACCAGGAAGATATACAAGGGTTTGCTGATACTATTCTCCAGTGCATTCAGAGGGAAGATTCTCTTAAAGCTTACGATAAGTGGCTGGAGGAGAGAATGGCAGAGCGGGATGACGCCCATTTAGAGAGAATGACAGAACGGGATTCCAGAACCCCACGGGAGAAGTACTTTGACTTGCACTCGCAAAAATATAGAAACTGGGTATCTCTCTCCCATAAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

282

Amino Acids

32.49

Weight (kDa)

5.38

Isoelectric Point (pI)

61.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 404
AasI GACNNNNNNGTC 1 cut(s) 189
AatII GACGTC 1 cut(s) 376
Acc36I ACCTGC 1 cut(s) 404
AccBSI CCGCTC 1 cut(s) 727
AccII CGCG 1 cut(s) 508
AciI CCGC 6 cut(s) 59, 282, 506, 508, 527, 727
AclI AACGTT 1 cut(s) 150
AcsI RAATTY 2 cut(s) 209, 274
AcvI CACGTG 1 cut(s) 134
AcyI GRCGYC 3 cut(s) 373, 530, 735
AfaI GTAC 3 cut(s) 57, 623, 788
AflIII ACRYGT 3 cut(s) 131, 133, 602
AgsI TTSAA 4 cut(s) 17, 91, 155, 599
AjnI CCWGG 2 cut(s) 229, 624
AleI CACNNNNGTG 1 cut(s) 134
AluBI AGCT 2 cut(s) 387, 692
AluI AGCT 2 cut(s) 387, 692
Alw26I GTCTC 2 cut(s) 252, 260
AoxI GGCC 1 cut(s) 461
ApoI RAATTY 2 cut(s) 209, 274
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 514
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 428
AsuII TTCGAA 1 cut(s) 207
BarI GAAGNNNNNNTAC 2 cut(s) 39, 71
BbrPI CACGTG 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 126
BccI CCATC 4 cut(s) 91, 325, 472, 575
BceAI ACGGC 1 cut(s) 494
BciT130I CCWGG 2 cut(s) 231, 626
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 2 cut(s) 252, 260
BfmI CTRYAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 404
BisI GCNGC 2 cut(s) 282, 528
BlsI GCNGC 2 cut(s) 283, 529
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 3 cut(s) 231, 260, 626
BmiI GGNNCC 1 cut(s) 611
BmrFI CCNGG 3 cut(s) 231, 260, 626
BmrI ACTGGG 2 cut(s) 19, 829
BmsI GCATC 3 cut(s) 92, 288, 490
BmuI ACTGGG 2 cut(s) 19, 829
BpiI GAAGAC 1 cut(s) 126
BpmI CTGGAG 2 cut(s) 644, 728
Bpu14I TTCGAA 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 260
BsaAI YACGTR 1 cut(s) 134
BsaHI GRCGYC 3 cut(s) 373, 530, 735
BsaJI CCNNGG 5 cut(s) 114, 229, 230, 506, 776
Bse1I ACTGG 3 cut(s) 14, 661, 824
BseBI CCWGG 2 cut(s) 231, 626
BseDI CCNNGG 5 cut(s) 114, 229, 230, 506, 776
BseGI GGATG 3 cut(s) 49, 336, 736
BseMII CTCAG 2 cut(s) 232, 551
BseNI ACTGG 3 cut(s) 14, 661, 824
BseRI GAGGAG 1 cut(s) 725
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 1 cut(s) 463
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 2 cut(s) 195, 384
BsmAI GTCTC 2 cut(s) 252, 260
BsmFI GGGAC 2 cut(s) 195, 384
BsmI GAATGC 2 cut(s) 105, 666
BsnI GGCC 1 cut(s) 463
Bsp119I TTCGAA 1 cut(s) 207
BspACI CCGC 6 cut(s) 59, 282, 506, 508, 527, 727
BspANI GGCC 1 cut(s) 463
BspCNI CTCAG 2 cut(s) 231, 550
BspFNI CGCG 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 611
BspMI ACCTGC 1 cut(s) 404
BspT104I TTCGAA 1 cut(s) 207
BsrBI CCGCTC 1 cut(s) 727
BsrI ACTGG 3 cut(s) 14, 661, 824
BssECI CCNNGG 5 cut(s) 114, 229, 230, 506, 776
BssNI GRCGYC 3 cut(s) 373, 530, 735
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 231, 626
Bst4CI ACNGT 2 cut(s) 191, 254
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 3 cut(s) 373, 530, 735
BstBAI YACGTR 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 70, 510
BstDEI CTNAG 2 cut(s) 218, 537
BstDSI CCRYGG 2 cut(s) 506, 776
BstF5I GGATG 3 cut(s) 49, 336, 736
BstFNI CGCG 1 cut(s) 508
BstHHI GCGC 1 cut(s) 514
BstMAI GTCTC 2 cut(s) 252, 260
BstMWI GCNNNNNNNGC 3 cut(s) 347, 410, 460
BstNI CCWGG 2 cut(s) 231, 626
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 3 cut(s) 229, 258, 624
BstSFI CTRYAG 1 cut(s) 311
BstUI CGCG 1 cut(s) 508
BstV2I GAAGAC 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 136
BsuRI GGCC 1 cut(s) 463
BtgI CCRYGG 2 cut(s) 506, 776
BtsCI GGATG 3 cut(s) 49, 336, 736
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 3 cut(s) 250, 291, 668
BveI ACCTGC 1 cut(s) 404
Cac8I GCNNGC 2 cut(s) 70, 510
CfoI GCGC 1 cut(s) 514
Cfr42I CCGCGG 1 cut(s) 509
CseI GACGC 2 cut(s) 519, 743
Csp6I GTAC 3 cut(s) 56, 622, 787
CviAII CATG 1 cut(s) 603
CviJI RGCY 6 cut(s) 228, 387, 463, 582, 692, 706
CviKI_1 RGCY 6 cut(s) 228, 387, 463, 582, 692, 706
CviQI GTAC 3 cut(s) 56, 622, 787
DdeI CTNAG 2 cut(s) 218, 537
DrdI GACNNNNNNGTC 1 cut(s) 189
DseDI GACNNNNNNGTC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 114
Eco72I CACGTG 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 229, 624
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 606
FaiI YATR 9 cut(s) 29, 452, 501, 503, 604, 635, 813, 837, 844
FalI AAGNNNNNCTT 2 cut(s) 669, 701
FaqI GGGAC 2 cut(s) 195, 384
FatI CATG 1 cut(s) 602
FauI CCCGC 2 cut(s) 501, 720
Fnu4HI GCNGC 2 cut(s) 282, 528
FokI GGATG 3 cut(s) 56, 343, 743
Fsp4HI GCNGC 2 cut(s) 282, 528
GlaI GCGC 1 cut(s) 513
GluI GCNGC 2 cut(s) 282, 528
GsuI CTGGAG 2 cut(s) 644, 728
HaeIII GGCC 1 cut(s) 463
HapII CCGG 1 cut(s) 260
HgaI GACGC 2 cut(s) 519, 743
HhaI GCGC 1 cut(s) 514
Hin1I GRCGYC 3 cut(s) 373, 530, 735
Hin1II CATG 1 cut(s) 606
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 7 cut(s) 17, 125, 155, 183, 517, 680, 764
HpaII CCGG 1 cut(s) 260
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 2 cut(s) 35, 622
Hpy188I TCNGA 4 cut(s) 221, 472, 540, 672
Hpy188III TCNNGA 3 cut(s) 377, 521, 768
Hpy8I GTNNAC 2 cut(s) 35, 622
HpyCH4III ACNGT 2 cut(s) 191, 254
HpyCH4IV ACGT 4 cut(s) 133, 150, 373, 432
HpyCH4V TGCA 5 cut(s) 105, 404, 454, 666, 799
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 410, 460
HpyF3I CTNAG 2 cut(s) 218, 537
HpySE526I ACGT 4 cut(s) 133, 150, 373, 432
Hsp92I GRCGYC 3 cut(s) 373, 530, 735
Hsp92II CATG 1 cut(s) 606
HspAI GCGC 1 cut(s) 512
KspI CCGCGG 1 cut(s) 509
LweI GCATC 3 cut(s) 92, 288, 490
MaeII ACGT 4 cut(s) 133, 150, 373, 432
MaeIII GTNAC 1 cut(s) 416
MbiI CCGCTC 1 cut(s) 727
MboII GAAGA 6 cut(s) 131, 152, 155, 485, 641, 689
MfeI CAATTG 1 cut(s) 291
MluCI AATT 3 cut(s) 209, 274, 291
MlyI GAGTC 1 cut(s) 177
MnlI CCTC 8 cut(s) 172, 215, 227, 312, 355, 373, 666, 703
Mph1103I ATGCAT 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 4 cut(s) 78, 213, 591, 687
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 508
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 3 cut(s) 231, 260, 626
MunI CAATTG 1 cut(s) 291
Mva1269I GAATGC 2 cut(s) 105, 666
MvaI CCWGG 2 cut(s) 231, 626
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 3 cut(s) 347, 410, 460
NciI CCSGG 1 cut(s) 260
NlaIII CATG 1 cut(s) 606
NlaIV GGNNCC 1 cut(s) 611
NmuCI GTSAC 1 cut(s) 416
NsiI ATGCAT 1 cut(s) 107
NspI RCATGY 1 cut(s) 606
NspV TTCGAA 1 cut(s) 207
OliI CACNNNNGTG 1 cut(s) 134
PaqCI CACCTGC 1 cut(s) 404
PasI CCCWGGG 1 cut(s) 230
PciI ACATGT 1 cut(s) 602
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PctI GAATGC 2 cut(s) 105, 666
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 6 cut(s) 17, 125, 155, 517, 680, 764
PfoI TCCNGGA 1 cut(s) 258
PkrI GCNGC 2 cut(s) 283, 529
PleI GAGTC 1 cut(s) 177
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
PpsI GAGTC 1 cut(s) 177
Ppu21I YACGTR 1 cut(s) 134
PscI ACATGT 1 cut(s) 602
Psp1406I AACGTT 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 229, 624
PspCI CACGTG 1 cut(s) 134
PspGI CCWGG 2 cut(s) 229, 624
PspN4I GGNNCC 1 cut(s) 611
RsaI GTAC 3 cut(s) 57, 623, 788
RsaNI GTAC 3 cut(s) 56, 622, 787
RseI CAYNNNNRTG 1 cut(s) 134
SacII CCGCGG 1 cut(s) 509
SaqAI TTAA 4 cut(s) 78, 213, 591, 687
SatI GCNGC 2 cut(s) 282, 528
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 3 cut(s) 231, 260, 626
SfaNI GCATC 3 cut(s) 92, 288, 490
SfcI CTRYAG 1 cut(s) 311
Sfr303I CCGCGG 1 cut(s) 509
SfuI TTCGAA 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 509
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 3 cut(s) 209, 274, 291
SsiI CCGC 6 cut(s) 59, 282, 506, 508, 527, 727
StyD4I CCNGG 3 cut(s) 229, 258, 624
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 191, 254
TaiI ACGT 4 cut(s) 136, 153, 376, 435
TaqI TCGA 2 cut(s) 207, 576
TaqII GACCGA 1 cut(s) 183
TasI AATT 3 cut(s) 209, 274, 291
TatI WGTACW 1 cut(s) 786
TauI GCSGC 2 cut(s) 284, 530
TfiI GAWTC 6 cut(s) 17, 125, 155, 517, 680, 764
Tru1I TTAA 4 cut(s) 78, 213, 591, 687
Tru9I TTAA 4 cut(s) 78, 213, 591, 687
TscAI CASTG 3 cut(s) 257, 291, 668
TseFI GTSAC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 2 cut(s) 435, 602
TspRI CASTG 3 cut(s) 257, 291, 668
XapI RAATTY 2 cut(s) 209, 274
XceI RCATGY 1 cut(s) 606
XcmI CCANNNNNNNNNTGG 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 159
ZraI GACGTC 1 cut(s) 374
ZrmI AGTACT 1 cut(s) 788
Zsp2I ATGCAT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.