Rw7G041580

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000129
Physical Location & Seq
Forward (+)
64972752 .. 64973639
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041580.1

Sequence Viewer

Length: 795 bp
ATGGACTTTTGCATCACTATCGTTAGCCCTCATGTAAAGGTTCAAAGAAGTGGGTTCCGTATTGTGTACCAGGAAGATATACAAGGGTTTGCTGATACAATTATCCAGTGCATGCAGAGGCAAGATTCTCTAAAATCTCACAATAAGTTGGTGGTAGAAGAATGGATACAGTTGATGCAACTGCAAGGTGCCACCATAGAGAGAATGACAGAACGGGATTCCAGAACCCCACGGGAAAAACAATTTGAATTGCACTTACAAAAATATAGAAATTGGGACTGGTCTGACCCCCGTCCTGTTTATTGTCACTTCGAGGGAGCTGAAATTTTCAAGTTGAAATGGTTCATGCCTTTCATCAACCAAGGCAACTCTGCAGAAATCCAACTGCCTCTGAATGTGTTCGATGATGATAATTGGTTGGGGTTTGCCGTATGTTCACAGTTGTCCCGCGACCGATATCCAAACATTAGTCATGGCAGTATTGCTCTCAATTCAGAGAATGTTTGGCTTGTTTATCGTCTGGACTCTGATGTTGTTTGGCACGGCTTATTTGATTACAGGATGCAAGCAGAGATTAATATACTCGAGCCATCAGAATACTATGCGACTAGTTTCCATTATATACCGCGCACTTCGGTTCTTAGTAAGATGTGGAGGCAATGCAAATTGGCCAGGATAACTATGTGGTTTTCTAGCCGCACATGCTCAGCTGTGCATAGTTGTGCCCTTCGTTTACTATTTAAGGAGGACGTTGAACATCTTGTAGAAACACTGACTCTGGCAGAATTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

264

Amino Acids

31.22

Weight (kDa)

5.99

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 114 - 252 1.1e-07 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AccII CGCG 2 cut(s) 450, 628
AciI CCGC 3 cut(s) 448, 626, 697
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 1 cut(s) 324
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 5 cut(s) 44, 248, 331, 337, 755
AhlI ACTAGT 1 cut(s) 608
AjnI CCWGG 2 cut(s) 69, 671
AluBI AGCT 2 cut(s) 320, 710
AluI AGCT 2 cut(s) 320, 710
Ama87I CYCGRG 1 cut(s) 584
AoxI GGCC 1 cut(s) 669
ApoI RAATTY 1 cut(s) 324
AseI ATTAAT 1 cut(s) 576
Asp700I GAANNNNTTC 2 cut(s) 341, 398
AspLEI GCGC 1 cut(s) 630
AvaI CYCGRG 1 cut(s) 584
BaeGI GKGCMC 1 cut(s) 727
BalI TGGCCA 1 cut(s) 671
BanI GGYRCC 1 cut(s) 188
BarI GAAGNNNNNNTAC 2 cut(s) 150, 182
BccI CCATC 1 cut(s) 598
BceAI ACGGC 2 cut(s) 413, 559
BcgI CGANNNNNNTGC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 71, 673
BciVI GTATCC 1 cut(s) 159
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 2 cut(s) 609, 693
BfmI CTRYAG 1 cut(s) 372
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 1 cut(s) 697
BlpI GCTNAGC 1 cut(s) 706
BlsI GCNGC 1 cut(s) 698
Bme1390I CCNGG 2 cut(s) 71, 673
BmeT110I CYCGRG 1 cut(s) 584
BmiI GGNNCC 2 cut(s) 56, 190
BmrFI CCNGG 2 cut(s) 71, 673
BmsI GCATC 3 cut(s) 21, 165, 552
BoxI GACNNNNGTC 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 706
BsaJI CCNNGG 2 cut(s) 230, 361
Bse1I ACTGG 2 cut(s) 106, 284
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 2 cut(s) 71, 673
BseDI CCNNGG 2 cut(s) 230, 361
BseGI GGATG 1 cut(s) 567
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 1 cut(s) 720
BseNI ACTGG 2 cut(s) 106, 284
BseSI GKGCMC 1 cut(s) 727
Bsh1236I CGCG 2 cut(s) 450, 628
Bsh1285I CGRYCG 1 cut(s) 454
BshFI GGCC 1 cut(s) 671
BshNI GGYRCC 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 454
BsiHKCI CYCGRG 1 cut(s) 584
BslFI GGGAC 2 cut(s) 290, 430
BsmFI GGGAC 2 cut(s) 290, 430
BsnI GGCC 1 cut(s) 671
BsoBI CYCGRG 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 727
Bsp1720I GCTNAGC 1 cut(s) 706
BspACI CCGC 3 cut(s) 448, 626, 697
BspANI GGCC 1 cut(s) 671
BspCNI CTCAG 1 cut(s) 719
BspFNI CGCG 2 cut(s) 450, 628
BspLI GGNNCC 2 cut(s) 56, 190
BspMAI CTGCAG 1 cut(s) 376
BspT107I GGYRCC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 665
BsrI ACTGG 2 cut(s) 106, 284
BssECI CCNNGG 2 cut(s) 230, 361
BssT1I CCWWGG 1 cut(s) 361
Bst2UI CCWGG 2 cut(s) 71, 673
Bst4CI ACNGT 2 cut(s) 171, 441
BstC8I GCNNGC 2 cut(s) 113, 567
BstDEI CTNAG 2 cut(s) 641, 706
BstDSI CCRYGG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 567
BstFNI CGCG 2 cut(s) 450, 628
BstHHI GCGC 1 cut(s) 630
BstMCI CGRYCG 1 cut(s) 454
BstMWI GCNNNNNNNGC 1 cut(s) 702
BstNI CCWGG 2 cut(s) 71, 673
BstNSI RCATGY 2 cut(s) 115, 705
BstPAI GACNNNNGTC 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 69, 671
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 727
BstUI CGCG 2 cut(s) 450, 628
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 671
BtgI CCRYGG 1 cut(s) 230
BtsCI GGATG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 113, 770
Cac8I GCNNGC 2 cut(s) 113, 567
CfoI GCGC 1 cut(s) 630
Csp6I GTAC 1 cut(s) 67
CviAII CATG 5 cut(s) 32, 112, 346, 473, 702
CviJI RGCY 8 cut(s) 27, 320, 508, 546, 589, 671, 696, 710
CviKI_1 RGCY 8 cut(s) 27, 320, 508, 546, 589, 671, 696, 710
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 641, 706
EaeI YGGCCR 1 cut(s) 669
Eco130I CCWWGG 1 cut(s) 361
Eco32I GATATC 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 584
EcoRII CCWGG 2 cut(s) 69, 671
EcoRV GATATC 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 5 cut(s) 35, 115, 349, 476, 705
FaqI GGGAC 2 cut(s) 290, 430
FatI CATG 5 cut(s) 31, 111, 345, 472, 701
FauI CCCGC 1 cut(s) 455
Fnu4HI GCNGC 1 cut(s) 697
FokI GGATG 1 cut(s) 574
Fsp4HI GCNGC 1 cut(s) 697
FspBI CTAG 2 cut(s) 609, 693
GlaI GCGC 1 cut(s) 629
GluI GCNGC 1 cut(s) 697
HaeIII GGCC 1 cut(s) 671
HhaI GCGC 1 cut(s) 630
Hin1II CATG 5 cut(s) 35, 115, 349, 476, 705
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HinfI GANTC 4 cut(s) 125, 218, 524, 775
Hpy166II GTNNAC 3 cut(s) 67, 437, 734
Hpy188I TCNGA 5 cut(s) 286, 393, 496, 529, 595
Hpy188III TCNNGA 2 cut(s) 222, 521
Hpy8I GTNNAC 3 cut(s) 67, 437, 734
HpyAV CCTTC 1 cut(s) 737
HpyCH4III ACNGT 2 cut(s) 171, 441
HpyCH4IV ACGT 1 cut(s) 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 702
HpyF3I CTNAG 2 cut(s) 641, 706
HpySE526I ACGT 1 cut(s) 750
Hsp92II CATG 5 cut(s) 35, 115, 349, 476, 705
HspAI GCGC 1 cut(s) 628
LmnI GCTCC 1 cut(s) 317
LweI GCATC 3 cut(s) 21, 165, 552
MaeI CTAG 2 cut(s) 609, 693
MaeII ACGT 1 cut(s) 750
MaeIII GTNAC 1 cut(s) 305
MboII GAAGA 2 cut(s) 86, 170
MhlI GDGCHC 1 cut(s) 727
MlsI TGGCCA 1 cut(s) 671
MluCI AATT 9 cut(s) 99, 242, 248, 271, 324, 412, 490, 665, 785
MluNI TGGCCA 1 cut(s) 671
MlyI GAGTC 2 cut(s) 518, 769
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 6 cut(s) 39, 111, 307, 399, 648, 739
Mox20I TGGCCA 1 cut(s) 671
MroXI GAANNNNTTC 2 cut(s) 341, 398
MscI TGGCCA 1 cut(s) 671
MseI TTAA 2 cut(s) 576, 741
MslI CAYNNNNRTG 1 cut(s) 720
Msp20I TGGCCA 1 cut(s) 671
MspA1I CMGCKG 1 cut(s) 710
MspR9I CCNGG 2 cut(s) 71, 673
MvaI CCWGG 2 cut(s) 71, 673
MvnI CGCG 2 cut(s) 450, 628
MwoI GCNNNNNNNGC 1 cut(s) 702
NlaIII CATG 5 cut(s) 35, 115, 349, 476, 705
NlaIV GGNNCC 2 cut(s) 56, 190
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 2 cut(s) 115, 705
PaeI GCATGC 1 cut(s) 115
PaeR7I CTCGAG 1 cut(s) 584
PdmI GAANNNNTTC 2 cut(s) 341, 398
PfeI GAWTC 2 cut(s) 125, 218
PkrI GCNGC 1 cut(s) 698
PleI GAGTC 2 cut(s) 518, 769
PpsI GAGTC 2 cut(s) 518, 769
PshAI GACNNNNGTC 1 cut(s) 291
PshBI ATTAAT 1 cut(s) 576
Psp6I CCWGG 2 cut(s) 69, 671
PspGI CCWGG 2 cut(s) 69, 671
PspN4I GGNNCC 2 cut(s) 56, 190
PspXI VCTCGAGB 1 cut(s) 584
PstI CTGCAG 1 cut(s) 376
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 720
SaqAI TTAA 2 cut(s) 576, 741
SatI GCNGC 1 cut(s) 697
SchI GAGTC 2 cut(s) 518, 769
ScrFI CCNGG 2 cut(s) 71, 673
SduI GDGCHC 1 cut(s) 727
SetI ASST 6 cut(s) 42, 190, 322, 712, 753, 793
SfaNI GCATC 3 cut(s) 21, 165, 552
SfcI CTRYAG 1 cut(s) 372
Sfr274I CTCGAG 1 cut(s) 584
SlaI CTCGAG 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
SpeI ACTAGT 1 cut(s) 608
SphI GCATGC 1 cut(s) 115
Sse9I AATT 9 cut(s) 99, 242, 248, 271, 324, 412, 490, 665, 785
SsiI CCGC 3 cut(s) 448, 626, 697
SspMI CTAG 2 cut(s) 609, 693
StyD4I CCNGG 2 cut(s) 69, 671
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 2 cut(s) 171, 441
TaiI ACGT 1 cut(s) 753
TaqI TCGA 3 cut(s) 312, 402, 585
TaqII GACCGA 1 cut(s) 468
TasI AATT 9 cut(s) 99, 242, 248, 271, 324, 412, 490, 665, 785
TauI GCSGC 1 cut(s) 699
TfiI GAWTC 2 cut(s) 125, 218
Tru1I TTAA 2 cut(s) 576, 741
Tru9I TTAA 2 cut(s) 576, 741
TscAI CASTG 2 cut(s) 113, 777
TseFI GTSAC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 334, 343
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 2 cut(s) 113, 777
VspI ATTAAT 1 cut(s) 576
XapI RAATTY 1 cut(s) 324
XceI RCATGY 2 cut(s) 115, 705
XhoI CTCGAG 1 cut(s) 584
XmnI GAANNNNTTC 2 cut(s) 341, 398
XspI CTAG 2 cut(s) 609, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.