Rmu_sc0019569.1_g000004

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019569.1
OG0000129
Physical Location & Seq
Reverse (-)
6507 .. 7898
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019569.1_g000004.1.cds

Sequence Viewer

Length: 1149 bp
atggattctcacctgaatgaaatgctttcgtacttagacattgggtgtcctgatgttcgtatcatagggatttgtggtatgggtggtatcggtaagacaactattgcacaagtggtttttgaaagggtacaggcccagtttgaaggttgcagctttcttgagaatgttagagaggtaattgaaaagcaaggtgcggttcatttacaacagcaacttctttcggatttgctgggaggtagtgtaaaatataatgtacagaacactagaatgggaaaaaatataatgaggcagaggctacattctaaaacggttcttatcattcttgatgatgtggaccaagaagaacaattggaagcattgtgtgatagggaattgtttggtctagggagtagaatcatcataacttctagagatgaacatctgctcagtgcagttgaaggagataaagtatataaggtgaatccattaactgatgctgaagctcttcagcttttcagtatgaaagccttcaagaaagaccagctggttggagaagattttctgaagttatccaaagaatttttgaaatatgctaatggccttccactagctattaaagttttgggttcttctgttaagggagtctatagagagcatataacaagaatactactaggtagtgaccactgtccggacattgatatagaagttctcatagagaaatctttggtaactccatttggaagaagattggggatgcatgacttggtacaacaaatgggttgggaaattgtacgtcaagaatgccgtgaagagcctggaaaacgtagcaggttgtggcttcccgatgaaatcatccatgtacttggtcggagtaaggccacgagtgcagttcaaagcataatcctcgaatttccaacaaaagacattgttgttcactcaattgataatgctttctcaaatatggatagattgcgattgctcaagattcggaatgtgaagctttctggaaacatcagatatctttctaatgagttacactatcttgaatggcatgattgtcctttggattctttcccgtcagacttccaacctgataaacttgtggaacttaacatgcattatagccgaatcaaacaactatggaggggaaaaaaagtaagatcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

382

Amino Acids

43.59

Weight (kDa)

6.65

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 801
AccIII TCCGGA 1 cut(s) 670
AciI CCGC 1 cut(s) 194
AcsI RAATTY 2 cut(s) 557, 890
AcuI CTGAAG 3 cut(s) 470, 498, 563
AfaI GTAC 6 cut(s) 32, 129, 255, 750, 774, 843
AfiI CCNNNNNNNGG 1 cut(s) 670
AgsI TTSAA 8 cut(s) 122, 143, 182, 437, 511, 565, 875, 1028
AjnI CCWGG 1 cut(s) 796
AluBI AGCT 6 cut(s) 153, 482, 490, 523, 590, 982
AluI AGCT 6 cut(s) 153, 482, 490, 523, 590, 982
Aor13HI TCCGGA 1 cut(s) 670
AoxI GGCC 3 cut(s) 132, 577, 858
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 2 cut(s) 557, 890
Asp700I GAANNNNTTC 3 cut(s) 483, 506, 537
AspS9I GGNCC 2 cut(s) 133, 334
AsuHPI GGTGA 1 cut(s) 469
AvaII GGWCC 1 cut(s) 334
BauI CACGAG 1 cut(s) 862
BbvI GCAGC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 771
BcgI CGANNNNNNTGC 2 cut(s) 868, 902
BciT130I CCWGG 1 cut(s) 798
BfaI CTAG 5 cut(s) 264, 383, 408, 587, 653
BfmI CTRYAG 1 cut(s) 625
BfuAI ACCTGC 1 cut(s) 801
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 798
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 133, 334
BmrFI CCNGG 1 cut(s) 798
BmrI ACTGGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 463, 726
BmuI ACTGGG 1 cut(s) 130
BoxI GACNNNNGTC 1 cut(s) 666
BpuEI CTTGAG 2 cut(s) 179, 947
BsaBI GATNNNNATC 1 cut(s) 417
BsaWI WCCGGW 1 cut(s) 670
BsaXI ACNNNNNCTCC 4 cut(s) 225, 255, 432, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse1I ACTGG 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 417
BseAI TCCGGA 1 cut(s) 670
BseBI CCWGG 1 cut(s) 798
BseGI GGATG 2 cut(s) 741, 834
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMII CTCAG 1 cut(s) 439
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 162
BseYI CCCAGC 1 cut(s) 229
BsgI GTGCAG 2 cut(s) 450, 888
BshFI GGCC 3 cut(s) 134, 579, 860
BsiSI CCGG 1 cut(s) 671
BslI CCNNNNNNNGG 1 cut(s) 670
BsmI GAATGC 1 cut(s) 788
BsnI GGCC 3 cut(s) 134, 579, 860
Bsp13I TCCGGA 1 cut(s) 670
Bsp1407I TGTACA 1 cut(s) 253
Bsp143I GATC 1 cut(s) 1142
BspACI CCGC 1 cut(s) 194
BspANI GGCC 3 cut(s) 134, 579, 860
BspCNI CTCAG 1 cut(s) 438
BspEI TCCGGA 1 cut(s) 670
BspMI ACCTGC 1 cut(s) 801
BspQI GCTCTTC 2 cut(s) 489, 786
BsrGI TGTACA 1 cut(s) 253
BsrI ACTGG 1 cut(s) 136
BssMI GATC 1 cut(s) 1142
BssSI CACGAG 1 cut(s) 862
Bst2BI CACGAG 1 cut(s) 862
Bst2UI CCWGG 1 cut(s) 798
Bst4CI ACNGT 2 cut(s) 310, 668
Bst6I CTCTTC 2 cut(s) 489, 786
BstAUI TGTACA 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 34, 425
BstF5I GGATG 2 cut(s) 741, 834
BstKTI GATC 1 cut(s) 1145
BstMBI GATC 1 cut(s) 1142
BstMWI GCNNNNNNNGC 1 cut(s) 866
BstNI CCWGG 1 cut(s) 798
BstNSI RCATGY 1 cut(s) 1099
BstPAI GACNNNNGTC 1 cut(s) 666
BstSCI CCNGG 1 cut(s) 796
BstSFI CTRYAG 1 cut(s) 625
BstV1I GCAGC 1 cut(s) 162
BstXI CCANNNNNNTGG 2 cut(s) 527, 845
BsuRI GGCC 3 cut(s) 134, 579, 860
BtsCI GGATG 2 cut(s) 741, 834
BtsIMutI CAGTG 2 cut(s) 433, 664
BveI ACCTGC 1 cut(s) 801
Cfr13I GGNCC 2 cut(s) 133, 334
Csp6I GTAC 6 cut(s) 31, 128, 254, 749, 773, 842
CviAII CATG 4 cut(s) 740, 839, 1034, 1096
CviQI GTAC 6 cut(s) 31, 128, 254, 749, 773, 842
DdeI CTNAG 2 cut(s) 34, 425
DpnI GATC 1 cut(s) 1144
DpnII GATC 1 cut(s) 1142
Eam1104I CTCTTC 2 cut(s) 489, 786
EarI CTCTTC 2 cut(s) 489, 786
Eco32I GATATC 1 cut(s) 1001
Eco47I GGWCC 1 cut(s) 334
Eco57I CTGAAG 3 cut(s) 470, 498, 563
EcoRII CCWGG 1 cut(s) 796
EcoRV GATATC 1 cut(s) 1001
EcoT22I ATGCAT 2 cut(s) 741, 1101
FaeI CATG 4 cut(s) 743, 842, 1037, 1099
FatI CATG 4 cut(s) 739, 838, 1033, 1095
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 2 cut(s) 748, 821
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 5 cut(s) 264, 383, 408, 587, 653
GluI GCNGC 1 cut(s) 151
GsaI CCCAGC 1 cut(s) 233
HaeIII GGCC 3 cut(s) 134, 579, 860
HapII CCGG 1 cut(s) 671
Hin1II CATG 4 cut(s) 743, 842, 1037, 1099
HindIII AAGCTT 1 cut(s) 980
HinfI GANTC 7 cut(s) 5, 393, 460, 621, 967, 1049, 1110
HpaII CCGG 1 cut(s) 671
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 2 cut(s) 334, 916
Hpy188I TCNGA 6 cut(s) 223, 543, 852, 972, 998, 1063
Hpy8I GTNNAC 2 cut(s) 334, 916
HpyAV CCTTC 4 cut(s) 137, 431, 517, 590
HpyCH4III ACNGT 2 cut(s) 310, 668
HpyCH4IV ACGT 2 cut(s) 775, 805
HpyCH4V TGCA 6 cut(s) 107, 150, 431, 739, 869, 1099
HpyF10VI GCNNNNNNNGC 1 cut(s) 866
HpyF3I CTNAG 2 cut(s) 34, 425
HpySE526I ACGT 2 cut(s) 775, 805
Hsp92II CATG 4 cut(s) 743, 842, 1037, 1099
Kpn2I TCCGGA 1 cut(s) 670
Kzo9I GATC 1 cut(s) 1142
LguI GCTCTTC 2 cut(s) 489, 786
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 2 cut(s) 463, 726
MaeI CTAG 5 cut(s) 264, 383, 408, 587, 653
MaeII ACGT 2 cut(s) 775, 805
MaeIII GTNAC 3 cut(s) 659, 709, 1014
MalI GATC 1 cut(s) 1144
MboI GATC 1 cut(s) 1142
MboII GAAGA 7 cut(s) 353, 476, 545, 600, 735, 738, 803
MfeI CAATTG 2 cut(s) 347, 921
MluCI AATT 7 cut(s) 177, 347, 371, 557, 768, 890, 921
MlyI GAGTC 1 cut(s) 630
MmeI TCCRAC 4 cut(s) 508, 830, 920, 1093
MnlI CCTC 6 cut(s) 166, 227, 279, 285, 896, 1119
Mph1103I ATGCAT 2 cut(s) 741, 1101
MroI TCCGGA 1 cut(s) 670
MroXI GAANNNNTTC 3 cut(s) 483, 506, 537
MseI TTAA 4 cut(s) 467, 594, 615, 1092
MslI CAYNNNNRTG 2 cut(s) 15, 266
MspA1I CMGCKG 1 cut(s) 523
MspI CCGG 1 cut(s) 671
MspR9I CCNGG 1 cut(s) 798
MunI CAATTG 2 cut(s) 347, 921
Mva1269I GAATGC 1 cut(s) 788
MvaI CCWGG 1 cut(s) 798
MwoI GCNNNNNNNGC 1 cut(s) 866
NdeII GATC 1 cut(s) 1142
NlaIII CATG 4 cut(s) 743, 842, 1037, 1099
NmuCI GTSAC 1 cut(s) 659
NsiI ATGCAT 2 cut(s) 741, 1101
NspI RCATGY 1 cut(s) 1099
PciSI GCTCTTC 2 cut(s) 489, 786
PctI GAATGC 1 cut(s) 788
PdmI GAANNNNTTC 3 cut(s) 483, 506, 537
PfeI GAWTC 6 cut(s) 5, 393, 460, 967, 1049, 1110
PkrI GCNGC 1 cut(s) 152
PleI GAGTC 1 cut(s) 629
PpsI GAGTC 1 cut(s) 629
PshAI GACNNNNGTC 1 cut(s) 666
Psp6I CCWGG 1 cut(s) 796
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 796
PspPI GGNCC 2 cut(s) 133, 334
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 6 cut(s) 32, 129, 255, 750, 774, 843
RsaNI GTAC 6 cut(s) 31, 128, 254, 749, 773, 842
RseI CAYNNNNRTG 2 cut(s) 15, 266
SapI GCTCTTC 2 cut(s) 489, 786
SaqAI TTAA 4 cut(s) 467, 594, 615, 1092
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 1 cut(s) 1142
Sau96I GGNCC 2 cut(s) 133, 334
SchI GAGTC 1 cut(s) 630
ScrFI CCNGG 1 cut(s) 798
SfaNI GCATC 2 cut(s) 463, 726
SfcI CTRYAG 1 cut(s) 625
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 2 cut(s) 15, 266
SmlI CTYRAG 2 cut(s) 158, 962
SmoI CTYRAG 2 cut(s) 158, 962
Sse9I AATT 7 cut(s) 177, 347, 371, 557, 768, 890, 921
SsiI CCGC 1 cut(s) 194
SspMI CTAG 5 cut(s) 264, 383, 408, 587, 653
StyD4I CCNGG 1 cut(s) 796
TaaI ACNGT 2 cut(s) 310, 668
TaiI ACGT 2 cut(s) 778, 808
TaqI TCGA 1 cut(s) 888
TasI AATT 7 cut(s) 177, 347, 371, 557, 768, 890, 921
TatI WGTACW 2 cut(s) 253, 841
TfiI GAWTC 6 cut(s) 5, 393, 460, 967, 1049, 1110
Tru1I TTAA 4 cut(s) 467, 594, 615, 1092
Tru9I TTAA 4 cut(s) 467, 594, 615, 1092
TscAI CASTG 2 cut(s) 433, 671
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 5 cut(s) 33, 188, 429, 515, 843
TspRI CASTG 2 cut(s) 433, 671
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 2 cut(s) 557, 890
XbaI TCTAGA 1 cut(s) 407
XceI RCATGY 1 cut(s) 1099
XmnI GAANNNNTTC 3 cut(s) 483, 506, 537
XspI CTAG 5 cut(s) 264, 383, 408, 587, 653
Zsp2I ATGCAT 2 cut(s) 741, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.