Rw7G041680

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000129
Physical Location & Seq
Forward (+)
65226640 .. 65227534
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041680.1

Sequence Viewer

Length: 795 bp
ATGGACTTTTGCATCAAGATCAGTGATGGCCCTCATGTAAAGGTTCAAACATGTGGGTTCCGTATTGTGTACCAAGAAGATATACAAGGATTTGCTGATACAATTATCCGGTGCATGCAAAGGGAAGATTCTCTTAAATCCTACAATAAGTTGGTGGTAGAAGAATGGATACTATTGATACATTTGCAAGGTGCCCTAAATTTAGAGAGAATGACAGAACGGGATTCCAGAACCCCACGGGAAAAACAATTTGAATTGCACTTACAAAAATATAGAAATTGGGACTGGTCTGACCCTCGTTCTTTTTTTTGTCACTTCGAGCGAGTTCAAATCTCCAAGTTGAAATGGTTCATGCCTTTCATCAACCAAGGCAACTCTGCACAAATCCAACTGCCTCTGAATGTGTTCGATGATTATAATTGGTTGGGGTTTGCCGTATGTTCTCAATTGTCCCACGACCAATATCCAAACATTGGTCTTGGTAGTACTGCTCCTGATTCAGAGGATGTTACGCTTAATTGCAGTCTGGCCTCTGATGTTGCTTGGGAGGGCTTATTTGATTACACGACTGAAGTAAACATTCAAGAGCCATCGGAATACGATGCGACTTGGTTCTTTTATATACCGCGCACTAAAGTTCGTAGTAAAGTCTGGAGGCAATGCAAATTGGCCAGGATAACTATGTGGTTGTCTAGCCCAGGCTCAGCAGTAGTGCATAATTGTGCCCTTCGTCTACTATTTAAGGAGGACGTTGAACATCTTGTAGAAACACTGACCCTCGCCGAATTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

264

Amino Acids

30.88

Weight (kDa)

5.41

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 116 - 252 3.3e-06 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 473
AccI GTMKAC 1 cut(s) 733
AccII CGCG 1 cut(s) 628
AciI CCGC 1 cut(s) 626
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 591
AfaI GTAC 2 cut(s) 71, 487
AfiI CCNNNNNNNGG 1 cut(s) 473
AflIII ACRYGT 1 cut(s) 50
AgsI TTSAA 6 cut(s) 47, 254, 329, 343, 584, 755
AjnI CCWGG 2 cut(s) 671, 697
AoxI GGCC 3 cut(s) 28, 528, 669
ApoI RAATTY 1 cut(s) 199
Asp700I GAANNNNTTC 2 cut(s) 347, 404
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 1 cut(s) 29
BaeGI GKGCMC 2 cut(s) 196, 727
BalI TGGCCA 1 cut(s) 671
BanI GGYRCC 1 cut(s) 191
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BccI CCATC 2 cut(s) 20, 598
BceAI ACGGC 1 cut(s) 419
BciT130I CCWGG 2 cut(s) 673, 699
BciVI GTATCC 1 cut(s) 162
BfaI CTAG 1 cut(s) 693
BfuI GTATCC 1 cut(s) 162
BlpI GCTNAGC 1 cut(s) 703
BmcAI AGTACT 1 cut(s) 487
Bme1390I CCNGG 2 cut(s) 673, 699
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 59, 193
BmrFI CCNGG 2 cut(s) 673, 699
BmsI GCATC 2 cut(s) 21, 592
BpmI CTGGAG 1 cut(s) 673
Bpu1102I GCTNAGC 1 cut(s) 703
BsaJI CCNNGG 3 cut(s) 236, 367, 697
BsaWI WCCGGW 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse1I ACTGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 2 cut(s) 673, 699
BseDI CCNNGG 3 cut(s) 236, 367, 697
BseGI GGATG 1 cut(s) 511
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 1 cut(s) 717
BseNI ACTGG 1 cut(s) 290
BseSI GKGCMC 2 cut(s) 196, 727
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 628
BshFI GGCC 3 cut(s) 30, 530, 671
BshNI GGYRCC 1 cut(s) 191
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 2 cut(s) 296, 436
BslI CCNNNNNNNGG 1 cut(s) 473
BsmFI GGGAC 2 cut(s) 296, 436
BsnI GGCC 3 cut(s) 30, 530, 671
Bsp1286I GDGCHC 2 cut(s) 196, 727
Bsp143I GATC 1 cut(s) 18
Bsp1720I GCTNAGC 1 cut(s) 703
BspACI CCGC 1 cut(s) 626
BspANI GGCC 3 cut(s) 30, 530, 671
BspCNI CTCAG 1 cut(s) 716
BspFNI CGCG 1 cut(s) 628
BspLI GGNNCC 2 cut(s) 59, 193
BspT107I GGYRCC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 665
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 3 cut(s) 236, 367, 697
BssMI GATC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 2 cut(s) 673, 699
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 703
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 511
BstFNI CGCG 1 cut(s) 628
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstNI CCWGG 2 cut(s) 673, 699
BstNSI RCATGY 2 cut(s) 54, 118
BstSCI CCNGG 2 cut(s) 671, 697
BstSLI GKGCMC 2 cut(s) 196, 727
BstUI CGCG 1 cut(s) 628
BsuI GTATCC 1 cut(s) 162
BsuRI GGCC 3 cut(s) 30, 530, 671
BtgI CCRYGG 1 cut(s) 236
BtsCI GGATG 1 cut(s) 511
BtsIMutI CAGTG 2 cut(s) 28, 770
Cac8I GCNNGC 1 cut(s) 116
CfoI GCGC 1 cut(s) 630
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 2 cut(s) 70, 486
CviAII CATG 4 cut(s) 35, 51, 115, 352
CviJI RGCY 7 cut(s) 30, 530, 552, 589, 671, 696, 702
CviKI_1 RGCY 7 cut(s) 30, 530, 552, 589, 671, 696, 702
CviQI GTAC 2 cut(s) 70, 486
DdeI CTNAG 1 cut(s) 703
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
EaeI YGGCCR 1 cut(s) 669
Eco130I CCWWGG 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 591
EcoRII CCWGG 2 cut(s) 671, 697
EcoT14I CCWWGG 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 4 cut(s) 38, 54, 118, 355
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 2 cut(s) 296, 436
FatI CATG 4 cut(s) 34, 50, 114, 351
FblI GTMKAC 1 cut(s) 733
FokI GGATG 1 cut(s) 518
FspBI CTAG 1 cut(s) 693
GlaI GCGC 1 cut(s) 629
GsuI CTGGAG 1 cut(s) 673
HaeIII GGCC 3 cut(s) 30, 530, 671
HapII CCGG 1 cut(s) 109
HhaI GCGC 1 cut(s) 630
Hin1II CATG 4 cut(s) 38, 54, 118, 355
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HinfI GANTC 3 cut(s) 128, 224, 497
HpaII CCGG 1 cut(s) 109
Hpy166II GTNNAC 3 cut(s) 70, 577, 734
Hpy188I TCNGA 5 cut(s) 292, 399, 502, 535, 595
Hpy188III TCNNGA 5 cut(s) 16, 228, 494, 584, 652
Hpy8I GTNNAC 3 cut(s) 70, 577, 734
HpyAV CCTTC 1 cut(s) 737
HpyCH4IV ACGT 1 cut(s) 750
HpyCH4V TGCA 9 cut(s) 12, 114, 118, 187, 259, 380, 522, 663, 715
HpyF3I CTNAG 1 cut(s) 703
HpySE526I ACGT 1 cut(s) 750
Hsp92II CATG 4 cut(s) 38, 54, 118, 355
HspAI GCGC 1 cut(s) 628
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 496
LweI GCATC 2 cut(s) 21, 592
MaeI CTAG 1 cut(s) 693
MaeII ACGT 1 cut(s) 750
MaeIII GTNAC 2 cut(s) 311, 508
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 3 cut(s) 89, 137, 173
MfeI CAATTG 1 cut(s) 446
MhlI GDGCHC 2 cut(s) 196, 727
MlsI TGGCCA 1 cut(s) 671
MluNI TGGCCA 1 cut(s) 671
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 9 cut(s) 42, 306, 405, 496, 541, 541, 648, 739, 788
Mox20I TGGCCA 1 cut(s) 671
MroXI GAANNNNTTC 2 cut(s) 347, 404
MscI TGGCCA 1 cut(s) 671
MseI TTAA 3 cut(s) 135, 516, 741
MslI CAYNNNNRTG 1 cut(s) 720
Msp20I TGGCCA 1 cut(s) 671
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 2 cut(s) 673, 699
MunI CAATTG 1 cut(s) 446
MvaI CCWGG 2 cut(s) 673, 699
MvnI CGCG 1 cut(s) 628
NdeII GATC 1 cut(s) 18
NlaIII CATG 4 cut(s) 38, 54, 118, 355
NlaIV GGNNCC 2 cut(s) 59, 193
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 2 cut(s) 54, 118
PaeI GCATGC 1 cut(s) 118
PciI ACATGT 1 cut(s) 50
PdmI GAANNNNTTC 2 cut(s) 347, 404
PfeI GAWTC 3 cut(s) 128, 224, 497
PflMI CCANNNNNTGG 1 cut(s) 473
PscI ACATGT 1 cut(s) 50
PsiI TTATAA 1 cut(s) 417
Psp6I CCWGG 2 cut(s) 671, 697
PspGI CCWGG 2 cut(s) 671, 697
PspN4I GGNNCC 2 cut(s) 59, 193
PspPI GGNCC 1 cut(s) 29
RsaI GTAC 2 cut(s) 71, 487
RsaNI GTAC 2 cut(s) 70, 486
RseI CAYNNNNRTG 1 cut(s) 720
SaqAI TTAA 3 cut(s) 135, 516, 741
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 29
ScaI AGTACT 1 cut(s) 487
ScrFI CCNGG 2 cut(s) 673, 699
SduI GDGCHC 2 cut(s) 196, 727
SetI ASST 4 cut(s) 45, 193, 753, 793
SfaNI GCATC 2 cut(s) 21, 592
SmiMI CAYNNNNRTG 1 cut(s) 720
SphI GCATGC 1 cut(s) 118
SsiI CCGC 1 cut(s) 626
SspMI CTAG 1 cut(s) 693
StyD4I CCNGG 2 cut(s) 671, 697
StyI CCWWGG 1 cut(s) 367
TaiI ACGT 1 cut(s) 753
TaqI TCGA 2 cut(s) 318, 408
TatI WGTACW 1 cut(s) 485
TfiI GAWTC 3 cut(s) 128, 224, 497
Tru1I TTAA 3 cut(s) 135, 516, 741
Tru9I TTAA 3 cut(s) 135, 516, 741
TscAI CASTG 2 cut(s) 28, 777
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 340, 349
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 28, 777
Van91I CCANNNNNTGG 1 cut(s) 473
XapI RAATTY 1 cut(s) 199
XceI RCATGY 2 cut(s) 54, 118
XmiI GTMKAC 1 cut(s) 733
XmnI GAANNNNTTC 2 cut(s) 347, 404
XspI CTAG 1 cut(s) 693
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.