RchiOBHm_Chr7g0240581

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000129
Physical Location & Seq
Forward (+)
66542650 .. 66545035
2386 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21561

Sequence Viewer

Length: 1239 bp
ATGTGTTTTAGCCACATCAAACAACTATGGAGGGGAAAAAAAGGATGCAGCAAGCTACGGTTTATTAATCTGAGTGGTTCACAATACTTGATGTCGACTCCAGACTTCACTGGGGTTCCAGATCTTCTAGTGTTGGTGCTTCAAGGTTGCACAAGCTTGATGGAGGTTCACCCGTCTCTTGGACATCTGAAGAAACTTTGCCATTTGAATATGGAATATTGCAAGTCTATTGAGAGCCTTCCACCTTTCACTACCTCGGAATCTCTTAAATATTTGAAGCTTTCACTCTGTTCAGGACTGAAGAAGTTTCCAGAAATGGAAGGAAATATGAAAAGCTTGCGGGAGCTTTATTTGGATGGCACCAGCATTGAGGAATTGCCTCCATCAATTGAACGGTTGACTGGCCTTACCATGTTGGATCTAACAGATTGTAAAAACCTTTTGCATCTTCCCAATACCATTGGGTGTTTGACATCTTTGAAAAGTCTCTATCTAACAGGTTGCTCCAAAATTGAAGAGATGCCTGAGAATCTGAATGGTATGAAATGTCTGGAGAAGCTTACAATTGATGGAACTTCCATAAGGGAGTTATCTTCCATTGTAGGCATGAAGAATCTAAAGAATCTATCCTGCGGAAGATGTAAATGTCTAGTTTCAGAATCATTTAAAGGTTTGGCTTTGTTATCGAATTTGATAGAGCTGGACTTGAGTTATTGCAATCTGATGGATGGAGCAATTCTCAATGATCTTAGCAGCCTAATCTCCTTGGAATTGTTAGATTTAAGTGGTAATTGCTTTGTGCGATTACCTGAAAGTATCTCTCAATTCTCAAAGCTCACCACTCTGATCTTGAGTGATTGCAGACAACTTCAATTGCTGCCCAAGAAGCTTCCGTTAAGTCTTCGAGACGTGTTTGCACAAGATTGTACCTCACTGACGGATTACCCAAATCAAATCAAAGTATTGAATTCATGGGAGTCGGGAGTGACTATCGTGAATTCCCTCAATTCTCCAGCACAAGTCTCAGAAATTTCCAGAATGTTGATCTTTCCAAGAAATGAGGGGGAATCTATAGCCATGCGTGTGACATATGAGCATGCCGAGGGGAAACAAGTTGATCCTTTGCCGCTGACAACTCTACAATGTCTAAAAGAGAAAGAGGTTGTACTCTCTCTCTCTCTCTCATCTTTTGTGTTCTACGTTGCAGTGGTCCGGCATTACCGCACATTCTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

412

Amino Acids

46.02

Weight (kDa)

7.41

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 54 - 166 6.1e-11 Leucine-rich repeat region
LRR_13 PF23286 88 - 173 6.7e-11 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_8 PF13855 112 - 168 1.7e-06 Leucine rich repeat
LRR_14 PF23598 234 - 327 1e-05 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccI GTMKAC 1 cut(s) 95
AciI CCGC 4 cut(s) 340, 633, 1127, 1222
AclWI GGATC 2 cut(s) 426, 1112
AcsI RAATTY 4 cut(s) 688, 967, 997, 1029
AcuI CTGAAG 2 cut(s) 209, 320
AfaI GTAC 2 cut(s) 928, 1167
AfiI CCNNNNNNNGG 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 909
AgsI TTSAA 8 cut(s) 143, 208, 277, 392, 481, 515, 872, 967
AjiI CACGTC 1 cut(s) 910
AluBI AGCT 9 cut(s) 55, 156, 280, 336, 346, 559, 700, 835, 889
AluI AGCT 9 cut(s) 55, 156, 280, 336, 346, 559, 700, 835, 889
Alw26I GTCTC 4 cut(s) 180, 491, 900, 1027
AlwI GGATC 2 cut(s) 426, 1112
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 3 cut(s) 48, 753, 877
ApoI RAATTY 4 cut(s) 688, 967, 997, 1029
AseI ATTAAT 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 1210
AsuHPI GGTGA 2 cut(s) 161, 829
AvaII GGWCC 1 cut(s) 1210
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 893
BbvI GCAGC 3 cut(s) 60, 765, 864
BccI CCATC 6 cut(s) 154, 350, 391, 563, 718, 722
BcoDI GTCTC 4 cut(s) 180, 491, 900, 1027
BfaI CTAG 2 cut(s) 128, 650
BfmI CTRYAG 2 cut(s) 1071, 1231
BglII AGATCT 1 cut(s) 121
BisI GCNGC 4 cut(s) 49, 754, 878, 1127
BlsI GCNGC 4 cut(s) 50, 755, 879, 1128
Bme18I GGWCC 1 cut(s) 1210
BmgBI CACGTC 1 cut(s) 910
BmgT120I GGNCC 1 cut(s) 1210
BmiI GGNNCC 2 cut(s) 117, 361
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 3 cut(s) 35, 454, 510
BmuI ACTGGG 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 893
BplI GAGNNNNNCTC 2 cut(s) 723, 755
BpmI CTGGAG 3 cut(s) 84, 572, 996
BpuEI CTTGAG 2 cut(s) 727, 871
BsaJI CCNNGG 3 cut(s) 255, 765, 1101
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 115, 406
BseDI CCNNGG 3 cut(s) 255, 765, 1101
BseGI GGATG 3 cut(s) 50, 361, 733
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 3 cut(s) 62, 516, 1038
BseNI ACTGG 2 cut(s) 115, 406
BseXI GCAGC 3 cut(s) 60, 765, 864
BshFI GGCC 1 cut(s) 405
BshNI GGYRCC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 1213
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 4 cut(s) 180, 491, 900, 1027
BsmBI CGTCTC 2 cut(s) 180, 900
BsnI GGCC 1 cut(s) 405
Bsp143I GATC 6 cut(s) 121, 418, 745, 846, 1044, 1117
BspACI CCGC 4 cut(s) 340, 633, 1127, 1222
BspANI GGCC 1 cut(s) 405
BspCNI CTCAG 3 cut(s) 63, 517, 1037
BspLI GGNNCC 2 cut(s) 117, 361
BspMAI CTGCAG 1 cut(s) 1235
BspPI GGATC 2 cut(s) 426, 1112
BspT107I GGYRCC 1 cut(s) 359
BsrI ACTGG 2 cut(s) 115, 406
BssECI CCNNGG 3 cut(s) 255, 765, 1101
BssMI GATC 6 cut(s) 121, 418, 745, 846, 1044, 1117
BssT1I CCWWGG 1 cut(s) 765
Bst4CI ACNGT 2 cut(s) 60, 396
Bst6I CTCTTC 1 cut(s) 510
BstAPI GCANNNNNTGC 1 cut(s) 1230
BstC8I GCNNGC 3 cut(s) 53, 338, 1098
BstDEI CTNAG 4 cut(s) 71, 525, 749, 1024
BstF5I GGATG 3 cut(s) 50, 361, 733
BstKTI GATC 6 cut(s) 124, 421, 748, 849, 1047, 1120
BstMAI GTCTC 4 cut(s) 180, 491, 900, 1027
BstMBI GATC 6 cut(s) 121, 418, 745, 846, 1044, 1117
BstMWI GCNNNNNNNGC 2 cut(s) 886, 1230
BstNSI RCATGY 1 cut(s) 1100
BstSFI CTRYAG 2 cut(s) 1071, 1231
BstV1I GCAGC 3 cut(s) 60, 765, 864
BstV2I GAAGAC 1 cut(s) 893
BstX2I RGATCY 2 cut(s) 121, 418
BstYI RGATCY 2 cut(s) 121, 418
BsuRI GGCC 1 cut(s) 405
BtrI CACGTC 1 cut(s) 910
BtsCI GGATG 3 cut(s) 50, 361, 733
BtsI GCAGTG 1 cut(s) 1212
BtsIMutI CAGTG 3 cut(s) 108, 932, 1212
Cac8I GCNNGC 3 cut(s) 53, 338, 1098
Cfr13I GGNCC 1 cut(s) 1210
Csp6I GTAC 2 cut(s) 927, 1166
CviAII CATG 5 cut(s) 412, 607, 972, 1078, 1097
CviQI GTAC 2 cut(s) 927, 1166
DdeI CTNAG 4 cut(s) 71, 525, 749, 1024
DpnI GATC 6 cut(s) 123, 420, 747, 848, 1046, 1119
DpnII GATC 6 cut(s) 121, 418, 745, 846, 1044, 1117
DraI TTTAAA 1 cut(s) 667
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 1210
Eco57I CTGAAG 2 cut(s) 209, 320
EcoRI GAATTC 2 cut(s) 967, 997
EcoT14I CCWWGG 1 cut(s) 765
ErhI CCWWGG 1 cut(s) 765
Esp3I CGTCTC 2 cut(s) 180, 900
FaeI CATG 5 cut(s) 415, 610, 975, 1081, 1100
FatI CATG 5 cut(s) 411, 606, 971, 1077, 1096
FauI CCCGC 1 cut(s) 333
FauNDI CATATG 1 cut(s) 1090
FblI GTMKAC 1 cut(s) 95
Fnu4HI GCNGC 4 cut(s) 49, 754, 878, 1127
FokI GGATG 3 cut(s) 57, 368, 740
Fsp4HI GCNGC 4 cut(s) 49, 754, 878, 1127
FspBI CTAG 2 cut(s) 128, 650
GluI GCNGC 4 cut(s) 49, 754, 878, 1127
GsuI CTGGAG 3 cut(s) 84, 572, 996
HaeIII GGCC 1 cut(s) 405
HapII CCGG 1 cut(s) 1213
Hin1II CATG 5 cut(s) 415, 610, 975, 1081, 1100
HincII GTYRAC 2 cut(s) 96, 399
HindII GTYRAC 2 cut(s) 96, 399
HindIII AAGCTT 5 cut(s) 154, 278, 334, 557, 887
HinfI GANTC 8 cut(s) 97, 260, 529, 613, 622, 659, 977, 1067
HpaII CCGG 1 cut(s) 1213
HphI GGTGA 2 cut(s) 161, 829
Hpy166II GTNNAC 4 cut(s) 80, 96, 169, 399
Hpy188I TCNGA 8 cut(s) 72, 189, 259, 534, 658, 723, 846, 1027
Hpy8I GTNNAC 4 cut(s) 80, 96, 169, 399
HpyAV CCTTC 2 cut(s) 248, 314
HpyCH4III ACNGT 2 cut(s) 60, 396
HpyCH4IV ACGT 2 cut(s) 909, 1200
HpyCH4V TGCA 9 cut(s) 48, 150, 222, 445, 717, 861, 917, 1205, 1233
HpyF10VI GCNNNNNNNGC 2 cut(s) 886, 1230
HpyF3I CTNAG 4 cut(s) 71, 525, 749, 1024
HpySE526I ACGT 2 cut(s) 909, 1200
Hsp92II CATG 5 cut(s) 415, 610, 975, 1081, 1100
Kzo9I GATC 6 cut(s) 121, 418, 745, 846, 1044, 1117
LmnI GCTCC 3 cut(s) 343, 509, 731
Lsp1109I GCAGC 3 cut(s) 60, 765, 864
LweI GCATC 3 cut(s) 35, 454, 510
MaeI CTAG 2 cut(s) 128, 650
MaeII ACGT 2 cut(s) 909, 1200
MaeIII GTNAC 2 cut(s) 985, 1084
MalI GATC 6 cut(s) 123, 420, 747, 848, 1046, 1119
MboI GATC 6 cut(s) 121, 418, 745, 846, 1044, 1117
MboII GAAGA 9 cut(s) 116, 202, 313, 440, 527, 585, 622, 648, 893
MfeI CAATTG 3 cut(s) 387, 564, 872
MflI RGATCY 2 cut(s) 121, 418
MlyI GAGTC 2 cut(s) 91, 986
MmeI TCCRAC 1 cut(s) 396
MseI TTAA 5 cut(s) 66, 267, 666, 782, 896
MslI CAYNNNNRTG 1 cut(s) 1082
MspA1I CMGCKG 1 cut(s) 1129
MspI CCGG 1 cut(s) 1213
MunI CAATTG 3 cut(s) 387, 564, 872
MwoI GCNNNNNNNGC 2 cut(s) 886, 1230
NdeI CATATG 1 cut(s) 1090
NdeII GATC 6 cut(s) 121, 418, 745, 846, 1044, 1117
NlaIII CATG 5 cut(s) 415, 610, 975, 1081, 1100
NlaIV GGNNCC 2 cut(s) 117, 361
NmeAIII GCCGAG 1 cut(s) 1126
NmuCI GTSAC 2 cut(s) 985, 1084
NspI RCATGY 1 cut(s) 1100
PaeI GCATGC 1 cut(s) 1100
PfeI GAWTC 6 cut(s) 260, 529, 613, 622, 659, 1067
PkrI GCNGC 4 cut(s) 50, 755, 879, 1128
PleI GAGTC 2 cut(s) 91, 985
PpsI GAGTC 2 cut(s) 91, 985
PshBI ATTAAT 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 117, 361
PspPI GGNCC 1 cut(s) 1210
PstI CTGCAG 1 cut(s) 1235
PsuI RGATCY 2 cut(s) 121, 418
RsaI GTAC 2 cut(s) 928, 1167
RsaNI GTAC 2 cut(s) 927, 1166
RseI CAYNNNNRTG 1 cut(s) 1082
SalI GTCGAC 1 cut(s) 94
SaqAI TTAA 5 cut(s) 66, 267, 666, 782, 896
SatI GCNGC 4 cut(s) 49, 754, 878, 1127
Sau3AI GATC 6 cut(s) 121, 418, 745, 846, 1044, 1117
Sau96I GGNCC 1 cut(s) 1210
SchI GAGTC 2 cut(s) 91, 986
SfaNI GCATC 3 cut(s) 35, 454, 510
SfcI CTRYAG 2 cut(s) 1071, 1231
SinI GGWCC 1 cut(s) 1210
SmiMI CAYNNNNRTG 1 cut(s) 1082
SmlI CTYRAG 2 cut(s) 706, 850
SmoI CTYRAG 2 cut(s) 706, 850
SphI GCATGC 1 cut(s) 1100
SsiI CCGC 4 cut(s) 340, 633, 1127, 1222
SspI AATATT 2 cut(s) 218, 272
SspMI CTAG 2 cut(s) 128, 650
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 2 cut(s) 60, 396
TaiI ACGT 2 cut(s) 912, 1203
TaqI TCGA 3 cut(s) 95, 686, 904
TatI WGTACW 1 cut(s) 1165
TauI GCSGC 1 cut(s) 1129
TfiI GAWTC 6 cut(s) 260, 529, 613, 622, 659, 1067
Tru1I TTAA 5 cut(s) 66, 267, 666, 782, 896
Tru9I TTAA 5 cut(s) 66, 267, 666, 782, 896
TscAI CASTG 3 cut(s) 115, 939, 1212
TseFI GTSAC 2 cut(s) 985, 1084
TseI GCWGC 3 cut(s) 48, 753, 877
Tsp45I GTSAC 2 cut(s) 985, 1084
TspDTI ATGAA 4 cut(s) 344, 557, 623, 960
TspGWI ACGGA 2 cut(s) 882, 953
TspRI CASTG 3 cut(s) 115, 939, 1212
VpaK11BI GGWCC 1 cut(s) 1210
VspI ATTAAT 1 cut(s) 66
XapI RAATTY 4 cut(s) 688, 967, 997, 1029
XceI RCATGY 1 cut(s) 1100
XmiI GTMKAC 1 cut(s) 95
XspI CTAG 2 cut(s) 128, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.