Rroxscaffold_3G00219710

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000129
Physical Location & Seq
Reverse (-)
1812823 .. 1815191
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219710.1

Sequence Viewer

Length: 1767 bp
ATGAAGAATTTGAATGGTCTATACTGCCGAGGATGTAAAGGTCTAGCTTTAGGATCATGGAAAGGTCATTCTGAAAGTTTGTTGTTTCCTGCTCTATTATCCAGTTTGACTTCTTTGGTAGAGCTAGATTTAAGGGATTGCAATCTGGTGGATGGAACCATTCCCAATGATCTTAGCAGCTTAATCTCTTTAAGAGAATTAGGTTTAGGTGGTAATAGTTTTGTTCGATTACCTGAAAGTATCTCTCAACTCTCAAAGCTCGAGAAATTAGAGTTGAGCAATTGTAAACAGCTTCAGTTGGTGCCCAAGCTTCCATCAAGTGCTCGACTGGTGCTTGCAGAAGATTGTACTTCACTGATAGATTTCCCAAATCAAATCAAATTATTGCCTTCAATTGAGTCTGGGATGACTACTATCAATTCACTCAGTTCTGCAAGTAGTTCAGCACTTAGAGACTCACATGGTTTCAGTACGTGGAAATCTTCAGCAAATGCCCAACCTTCTGAGGTGCTTTTGACACATGAGCATACAGAGTGGAAACGAGTTGATCGAGTGTCACTGCCACTTCCAATGCTTATGAAAGACATTGAATTTTCTGATCCATCATCAAAACCCAGTGATATCATTTATTTTGATAATGAAATTCCAGAGTGGTTCAGCACTATATCTACCACCAATCCTATATCAATCTCTATACCTCCAGATCTGACAGATGATGACAAATGGCAGTTTCCAAAGTGGGAGTTAAATCAATCAACCACGGTGGCGGCTAAATTTGAAACCAACAATCCATTCATGGAGGTCCAGAAATGTGGGATTCGTCTAGTTTATGAGCAAGATGCTGGATGGTATACCAGACTATTCCCTGGGGTTAATGCAATTTGTCTAAATGAAGTGATGGATGCTATGCTGAAAACTGGCTGGCTTAGTCAAGTGGATCAATATTTGAAATGGGAGAAAATTATTCCCCCCATCGAAGAAGACTCCAGTACAGTTCTGCTAAGGAAGAACATCGAGTCTGTTCTTCCTCGATACCTTGAGGCATTGAACCATTATCCTGCAACATACAAATTTAACCTCAGAGGAAGCCCGTCGTGGTTTGAGTCCTTTTTCACTGATACAAGGTCAGGGTCGACTCTAGTGTCAATTAAGCTGCCTCAAAATCTACACAAGAGTAAGAAGTGGATGGCATTTGCAATATGCGCATCAATTGCAGAGGAACAGCAAGAGGACTATCATGTTTATTTTAAACTCAAAACGGGTGAATACAATGAGGATCTGTCCCAAGAACTTGAGTACATTGTGGCAATGTCGTCACAAGCAAATCATTATCAACTTTTGGTTGTGTACATACCGCGGGCATTGATTCCCGAAGTCTTGCTCTCTCGGACATCAACAACTGAAATGCACATTTCCTTCAGAGTCGATACTCCTGGTGCAGAAGTTCAAAGAAGTTGTGGCCGTATTGTTTACCAGGAAGATTTAGAAGGGTTTGTTGAAACAATCGTCCGGTGCATGCAAAGAGAAGATACTCTTGAACTTTATGATAAATGGGTGGTAGAAGATTGGATAGACTTGATAGGATTGCAAGGGGGTCATTTATGTACTCCATACAAATGCAAATCCATAGCAGGACGGGAAAGGAAGTTTGAATTGCTCTCTCAGAAATATAGGAATCGGGACTGGGCTATGTCTCCTCCTTATATTTGCGTCTTCTTTGGAGCTGAAATTTCCAAGTGGAATTGGTTCGTGCACTTCAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

588

Amino Acids

67.05

Weight (kDa)

5.27

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 32 - 107 1.8e-07 Leucine-rich repeat region
C-JID PF20160 371 - 495 5.7e-06 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1141
Acc16I TGCGCA 1 cut(s) 1204
AccB1I GGYRCC 1 cut(s) 301
AccI GTMKAC 2 cut(s) 851, 1133
AccII CGCG 1 cut(s) 1357
AciI CCGC 3 cut(s) 767, 1355, 1357
AclWI GGATC 4 cut(s) 61, 593, 945, 1284
AcoI YGGCCR 1 cut(s) 1459
AcsI RAATTY 6 cut(s) 7, 590, 642, 773, 1070, 1728
AcuI CTGAAG 3 cut(s) 278, 468, 1402
AfaI GTAC 6 cut(s) 349, 472, 991, 1298, 1349, 1606
AjnI CCWGG 3 cut(s) 865, 1432, 1473
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AluBI AGCT 8 cut(s) 47, 124, 180, 259, 292, 310, 1153, 1724
AluI AGCT 8 cut(s) 47, 124, 180, 259, 292, 310, 1153, 1724
Alw21I GWGCWC 2 cut(s) 325, 1755
Alw26I GTCTC 2 cut(s) 447, 1698
Alw44I GTGCAC 1 cut(s) 1751
AlwI GGATC 4 cut(s) 61, 593, 945, 1284
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 1 cut(s) 1459
ApaLI GTGCAC 1 cut(s) 1751
ApeKI GCWGC 2 cut(s) 177, 1153
ApoI RAATTY 6 cut(s) 7, 590, 642, 773, 1070, 1728
Asp700I GAANNNNTTC 1 cut(s) 1745
AspLEI GCGC 1 cut(s) 1205
AspS9I GGNCC 1 cut(s) 802
AsuHPI GGTGA 1 cut(s) 1274
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 1 cut(s) 802
BaeGI GKGCMC 2 cut(s) 306, 1755
BanI GGYRCC 1 cut(s) 301
BbsI GAAGAC 2 cut(s) 987, 1705
Bbv12I GWGCWC 2 cut(s) 325, 1755
BbvI GCAGC 2 cut(s) 189, 1140
BccI CCATC 7 cut(s) 146, 322, 610, 840, 892, 980, 1180
BceAI ACGGC 1 cut(s) 1446
BciT130I CCWGG 3 cut(s) 867, 1434, 1475
BcoDI GTCTC 2 cut(s) 447, 1698
BfaI CTAG 4 cut(s) 44, 125, 824, 1139
BglII AGATCT 1 cut(s) 703
BisI GCNGC 3 cut(s) 178, 768, 1154
BlsI GCNGC 3 cut(s) 179, 769, 1155
Bme1390I CCNGG 3 cut(s) 867, 1434, 1475
Bme18I GGWCC 1 cut(s) 802
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 802
BmiI GGNNCC 2 cut(s) 157, 303
BmrFI CCNGG 3 cut(s) 867, 1434, 1475
BmrI ACTGGG 2 cut(s) 609, 1693
BmsI GCATC 3 cut(s) 829, 892, 1214
BmuI ACTGGG 2 cut(s) 609, 1693
BpiI GAAGAC 2 cut(s) 987, 1705
BpmI CTGGAG 2 cut(s) 684, 970
Bpu10I CCTNAGC 1 cut(s) 1001
BpuEI CTTGAG 2 cut(s) 1058, 1313
BsaAI YACGTR 1 cut(s) 474
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 5 cut(s) 28, 759, 865, 866, 1355
BsaWI WCCGGW 1 cut(s) 1509
Bse1I ACTGG 6 cut(s) 102, 333, 615, 922, 987, 1688
Bse3DI GCAATG 1 cut(s) 1314
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 3 cut(s) 867, 1434, 1475
BseDI CCNNGG 5 cut(s) 28, 759, 865, 866, 1355
BseGI GGATG 6 cut(s) 38, 157, 411, 851, 907, 1191
BseJI GATNNNNATC 1 cut(s) 141
BseMI GCAATG 1 cut(s) 1314
BseMII CTCAG 4 cut(s) 439, 495, 1093, 1676
BseNI ACTGG 6 cut(s) 102, 333, 615, 922, 987, 1688
BseRI GAGGAG 1 cut(s) 1686
BseSI GKGCMC 2 cut(s) 306, 1755
BseXI GCAGC 2 cut(s) 189, 1140
BsgI GTGCAG 1 cut(s) 1458
Bsh1236I CGCG 1 cut(s) 1357
BshFI GGCC 1 cut(s) 1461
BshNI GGYRCC 1 cut(s) 301
BsiHKAI GWGCWC 2 cut(s) 325, 1755
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 1510
BslFI GGGAC 2 cut(s) 1267, 1694
BsmAI GTCTC 2 cut(s) 447, 1698
BsmFI GGGAC 2 cut(s) 1267, 1694
BsnI GGCC 1 cut(s) 1461
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 3 cut(s) 306, 325, 1755
Bsp1407I TGTACA 1 cut(s) 1347
Bsp143I GATC 7 cut(s) 53, 169, 547, 598, 703, 937, 1276
BspACI CCGC 3 cut(s) 767, 1355, 1357
BspANI GGCC 1 cut(s) 1461
BspCNI CTCAG 4 cut(s) 438, 496, 1092, 1675
BspFNI CGCG 1 cut(s) 1357
BspLI GGNNCC 2 cut(s) 157, 303
BspPI GGATC 4 cut(s) 61, 593, 945, 1284
BspT107I GGYRCC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 1314
BsrGI TGTACA 1 cut(s) 1347
BsrI ACTGG 6 cut(s) 102, 333, 615, 922, 987, 1688
BssECI CCNNGG 5 cut(s) 28, 759, 865, 866, 1355
BssMI GATC 7 cut(s) 53, 169, 547, 598, 703, 937, 1276
BssNAI GTATAC 1 cut(s) 852
Bst1107I GTATAC 1 cut(s) 852
Bst2UI CCWGG 3 cut(s) 867, 1434, 1475
Bst4CI ACNGT 2 cut(s) 763, 994
BstAPI GCANNNNNTGC 1 cut(s) 1211
BstAUI TGTACA 1 cut(s) 1347
BstBAI YACGTR 1 cut(s) 474
BstC8I GCNNGC 4 cut(s) 336, 923, 1359, 1517
BstDEI CTNAG 8 cut(s) 173, 425, 449, 504, 926, 1001, 1079, 1662
BstDSI CCRYGG 2 cut(s) 759, 1355
BstF5I GGATG 6 cut(s) 38, 157, 411, 851, 907, 1191
BstFNI CGCG 1 cut(s) 1357
BstHHI GCGC 1 cut(s) 1205
BstKTI GATC 7 cut(s) 56, 172, 550, 601, 706, 940, 1279
BstMAI GTCTC 2 cut(s) 447, 1698
BstMBI GATC 7 cut(s) 53, 169, 547, 598, 703, 937, 1276
BstMWI GCNNNNNNNGC 2 cut(s) 1202, 1211
BstNI CCWGG 3 cut(s) 867, 1434, 1475
BstNSI RCATGY 1 cut(s) 1519
BstSCI CCNGG 3 cut(s) 865, 1432, 1473
BstSLI GKGCMC 2 cut(s) 306, 1755
BstUI CGCG 1 cut(s) 1357
BstV1I GCAGC 2 cut(s) 189, 1140
BstV2I GAAGAC 2 cut(s) 987, 1705
BstX2I RGATCY 2 cut(s) 703, 1276
BstXI CCANNNNNNTGG 1 cut(s) 812
BstYI RGATCY 2 cut(s) 703, 1276
BstZ17I GTATAC 1 cut(s) 852
BsuRI GGCC 1 cut(s) 1461
BtgI CCRYGG 2 cut(s) 759, 1355
BtsCI GGATG 6 cut(s) 38, 157, 411, 851, 907, 1191
BtsI GCAGTG 1 cut(s) 557
BtsIMutI CAGTG 4 cut(s) 353, 557, 622, 1113
Cac8I GCNNGC 4 cut(s) 336, 923, 1359, 1517
CfoI GCGC 1 cut(s) 1205
Cfr13I GGNCC 1 cut(s) 802
Cfr42I CCGCGG 1 cut(s) 1358
CseI GACGC 1 cut(s) 1699
Csp6I GTAC 6 cut(s) 348, 471, 990, 1297, 1348, 1605
CspCI CAANNNNNGTGG 2 cut(s) 744, 779
CviAII CATG 6 cut(s) 57, 461, 521, 796, 1238, 1516
CviQI GTAC 6 cut(s) 348, 471, 990, 1297, 1348, 1605
DdeI CTNAG 8 cut(s) 173, 425, 449, 504, 926, 1001, 1079, 1662
DpnI GATC 7 cut(s) 55, 171, 549, 600, 705, 939, 1278
DpnII GATC 7 cut(s) 53, 169, 547, 598, 703, 937, 1276
DraI TTTAAA 1 cut(s) 1249
DrdI GACNNNNNNGTC 1 cut(s) 1141
DseDI GACNNNNNNGTC 1 cut(s) 1141
EaeI YGGCCR 1 cut(s) 1459
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 802
Eco57I CTGAAG 3 cut(s) 278, 468, 1402
Eco88I CYCGRG 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 865, 1432, 1473
EcoRV GATATC 1 cut(s) 622
FaeI CATG 6 cut(s) 60, 464, 524, 799, 1241, 1519
FalI AAGNNNNNCTT 2 cut(s) 1518, 1550
FaqI GGGAC 2 cut(s) 1267, 1694
FatI CATG 6 cut(s) 56, 460, 520, 795, 1237, 1515
FauI CCCGC 1 cut(s) 1350
FblI GTMKAC 2 cut(s) 851, 1133
Fnu4HI GCNGC 3 cut(s) 178, 768, 1154
FokI GGATG 6 cut(s) 45, 164, 418, 858, 914, 1198
Fsp4HI GCNGC 3 cut(s) 178, 768, 1154
FspAI RTGCGCAY 1 cut(s) 1204
FspBI CTAG 4 cut(s) 44, 125, 824, 1139
FspI TGCGCA 1 cut(s) 1204
GlaI GCGC 1 cut(s) 1204
GluI GCNGC 3 cut(s) 178, 768, 1154
GsuI CTGGAG 2 cut(s) 684, 970
HaeIII GGCC 1 cut(s) 1461
HapII CCGG 1 cut(s) 1510
HgaI GACGC 1 cut(s) 1699
HhaI GCGC 1 cut(s) 1205
Hin1II CATG 6 cut(s) 60, 464, 524, 799, 1241, 1519
Hin6I GCGC 1 cut(s) 1203
HinP1I GCGC 1 cut(s) 1203
HincII GTYRAC 1 cut(s) 1134
HindII GTYRAC 1 cut(s) 1134
HindIII AAGCTT 1 cut(s) 308
HpaII CCGG 1 cut(s) 1510
HphI GGTGA 1 cut(s) 1274
Hpy166II GTNNAC 6 cut(s) 287, 852, 1134, 1348, 1471, 1753
Hpy188I TCNGA 8 cut(s) 73, 505, 598, 708, 1082, 1389, 1421, 1665
Hpy188III TCNNGA 7 cut(s) 262, 647, 701, 805, 1370, 1535, 1679
Hpy8I GTNNAC 6 cut(s) 287, 852, 1134, 1348, 1471, 1753
Hpy99I CGWCG 1 cut(s) 1096
HpyAV CCTTC 4 cut(s) 399, 510, 1426, 1481
HpyCH4III ACNGT 2 cut(s) 763, 994
HpyCH4IV ACGT 1 cut(s) 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 1202, 1211
HpyF3I CTNAG 8 cut(s) 173, 425, 449, 504, 926, 1001, 1079, 1662
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 6 cut(s) 60, 464, 524, 799, 1241, 1519
HspAI GCGC 1 cut(s) 1203
KspI CCGCGG 1 cut(s) 1358
Kzo9I GATC 7 cut(s) 53, 169, 547, 598, 703, 937, 1276
LmnI GCTCC 1 cut(s) 1721
Lsp1109I GCAGC 2 cut(s) 189, 1140
LweI GCATC 3 cut(s) 829, 892, 1214
MaeI CTAG 4 cut(s) 44, 125, 824, 1139
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 2 cut(s) 555, 1314
MalI GATC 7 cut(s) 55, 171, 549, 600, 705, 939, 1278
MboI GATC 7 cut(s) 53, 169, 547, 598, 703, 937, 1276
MfeI CAATTG 3 cut(s) 280, 393, 1209
MflI RGATCY 2 cut(s) 703, 1276
MhlI GDGCHC 3 cut(s) 306, 325, 1755
MlyI GAGTC 7 cut(s) 407, 449, 977, 1025, 1112, 1129, 1431
MroXI GAANNNNTTC 1 cut(s) 1745
MseI TTAA 8 cut(s) 131, 182, 191, 746, 873, 1074, 1149, 1248
MslI CAYNNNNRTG 2 cut(s) 1615, 1758
MspA1I CMGCKG 1 cut(s) 1357
MspI CCGG 1 cut(s) 1510
MspR9I CCNGG 3 cut(s) 867, 1434, 1475
MunI CAATTG 3 cut(s) 280, 393, 1209
MvaI CCWGG 3 cut(s) 867, 1434, 1475
MvnI CGCG 1 cut(s) 1357
MwoI GCNNNNNNNGC 2 cut(s) 1202, 1211
NdeII GATC 7 cut(s) 53, 169, 547, 598, 703, 937, 1276
NlaIII CATG 6 cut(s) 60, 464, 524, 799, 1241, 1519
NlaIV GGNNCC 2 cut(s) 157, 303
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 2 cut(s) 555, 1314
NsbI TGCGCA 1 cut(s) 1204
NspI RCATGY 1 cut(s) 1519
PaeI GCATGC 1 cut(s) 1519
PaeR7I CTCGAG 1 cut(s) 260
PasI CCCWGGG 1 cut(s) 866
PcsI WCGNNNNNNNCGW 1 cut(s) 547
PdmI GAANNNNTTC 1 cut(s) 1745
PfeI GAWTC 3 cut(s) 817, 1366, 1675
PkrI GCNGC 3 cut(s) 179, 769, 1155
PleI GAGTC 7 cut(s) 406, 449, 977, 1024, 1111, 1129, 1430
PpsI GAGTC 7 cut(s) 406, 449, 977, 1024, 1111, 1129, 1430
Ppu21I YACGTR 1 cut(s) 474
Psp6I CCWGG 3 cut(s) 865, 1432, 1473
PspGI CCWGG 3 cut(s) 865, 1432, 1473
PspN4I GGNNCC 2 cut(s) 157, 303
PspPI GGNCC 1 cut(s) 802
PsuI RGATCY 2 cut(s) 703, 1276
RsaI GTAC 6 cut(s) 349, 472, 991, 1298, 1349, 1606
RsaNI GTAC 6 cut(s) 348, 471, 990, 1297, 1348, 1605
RseI CAYNNNNRTG 2 cut(s) 1615, 1758
SacII CCGCGG 1 cut(s) 1358
SalI GTCGAC 1 cut(s) 1132
SaqAI TTAA 8 cut(s) 131, 182, 191, 746, 873, 1074, 1149, 1248
SatI GCNGC 3 cut(s) 178, 768, 1154
Sau3AI GATC 7 cut(s) 53, 169, 547, 598, 703, 937, 1276
Sau96I GGNCC 1 cut(s) 802
SchI GAGTC 7 cut(s) 407, 449, 977, 1025, 1112, 1129, 1431
ScrFI CCNGG 3 cut(s) 867, 1434, 1475
SduI GDGCHC 3 cut(s) 306, 325, 1755
SfaNI GCATC 3 cut(s) 829, 892, 1214
Sfr274I CTCGAG 1 cut(s) 260
Sfr303I CCGCGG 1 cut(s) 1358
SgrBI CCGCGG 1 cut(s) 1358
SinI GGWCC 1 cut(s) 802
SlaI CTCGAG 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 1615, 1758
SmlI CTYRAG 3 cut(s) 260, 1037, 1292
SmoI CTYRAG 3 cut(s) 260, 1037, 1292
SphI GCATGC 1 cut(s) 1519
SsiI CCGC 3 cut(s) 767, 1355, 1357
SspI AATATT 1 cut(s) 944
SspMI CTAG 4 cut(s) 44, 125, 824, 1139
StyD4I CCNGG 3 cut(s) 865, 1432, 1473
TaaI ACNGT 2 cut(s) 763, 994
TaiI ACGT 1 cut(s) 476
TaqI TCGA 9 cut(s) 226, 261, 325, 550, 975, 1014, 1030, 1133, 1425
TatI WGTACW 5 cut(s) 347, 989, 1296, 1347, 1604
TauI GCSGC 1 cut(s) 770
TfiI GAWTC 3 cut(s) 817, 1366, 1675
Tru1I TTAA 8 cut(s) 131, 182, 191, 746, 873, 1074, 1149, 1248
Tru9I TTAA 8 cut(s) 131, 182, 191, 746, 873, 1074, 1149, 1248
TscAI CASTG 4 cut(s) 360, 564, 622, 1120
TseFI GTSAC 2 cut(s) 555, 1314
TseI GCWGC 2 cut(s) 177, 1153
Tsp45I GTSAC 2 cut(s) 555, 1314
TspDTI ATGAA 5 cut(s) 17, 593, 654, 784, 906
TspRI CASTG 4 cut(s) 360, 564, 622, 1120
VneI GTGCAC 1 cut(s) 1751
VpaK11BI GGWCC 1 cut(s) 802
XapI RAATTY 6 cut(s) 7, 590, 642, 773, 1070, 1728
XceI RCATGY 1 cut(s) 1519
XhoI CTCGAG 1 cut(s) 260
XmiI GTMKAC 2 cut(s) 851, 1133
XmnI GAANNNNTTC 1 cut(s) 1745
XspI CTAG 4 cut(s) 44, 125, 824, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.