Rroxscaffold_3G00219770

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000129
Physical Location & Seq
Reverse (-)
1902807 .. 1904831
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219770.1

Sequence Viewer

Length: 933 bp
ATGGTGGTCCAGAAATGTGGAATTCGTCTAGTCTATGAGCAAGATGCTACATTGTTTTCCAGCATAGTAGGGGTGGAACATCCGATTGGGCTGACAGAAGTTGAGGACGCCTCTGCGGAGCCTGGCTGGCTTAGTCAATCTTTGGAATGGGAGAAATTCATTCCACCCTTGGAAGAAGAATCCACACTTGTGCTGAGAAAGAACCTTGAGTCTGTTCTTCCAAGATTCCTTGAGGCATTAAACTGTTATTCTAAAATATTCAAATTTAACCTCAAAGGAAGCCCAGGGTGCACGTGGTTTGAGTTGTTTCACTCTGATACGGGGTCAAATTTGAACCTAGCGCCAATCAAGCTGCCTCAGAATCCACATAAGAGCAAGAAGTGGATGGGATTTGCAATGTGTGCATCGCTTGAAGAGGAAGTGGGGCACACAATGAAAGAGGACAACTATTTGGTAATTGTTAAAGTATTTGGTACGGGTATGGCCCAAATTCCCGAAGTTTTGTTAACTCAGACATTAAAAACTGAAATGGACATTGGCATTGTGGTCCATAGCAATCATATAAAGGTTCAAAGAATTGGGTTCCGTAATGTGTACCAGGAAGATATACAAGGGCTTGCTGATACAATTATCTGGTGCATGCAAAGGGAAGATTCTCTTAAATCTTACGATAAGTTGGAGGTAAAAGAATGGATAAATTTGATACAATTGCAAGGTGCCCTTTCATTAGAGAGAGTGACAGAACGGGATTCCAGAACCCCATGGGAAAAATACTTTGAATTGCACTCACGAAAATATAGAAATTGGAAACACTGGTCCTCGCCCAATTACCTTGAACATCCCCCAGCATGTGCTGCCAAGTCATGGAGAAGGCAAGAGAAGAGGACCGTCTTCCCTTTTAAGGAACAGTTGAGGATATGCAAAGATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

310

Amino Acids

35.99

Weight (kDa)

6.52

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 113 - 203 6.3e-08 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 716
AccB7I CCANNNNNTGG 1 cut(s) 864
AciI CCGC 1 cut(s) 116
AcsI RAATTY 6 cut(s) 21, 155, 263, 328, 489, 697
AcvI CACGTG 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 475, 596
AfiI CCNNNNNNNGG 2 cut(s) 864, 901
AgsI TTSAA 6 cut(s) 262, 334, 413, 572, 779, 836
AjnI CCWGG 3 cut(s) 121, 283, 597
AjuI GAANNNNNNNTTGG 4 cut(s) 69, 101, 519, 551
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
Alw21I GWGCWC 1 cut(s) 293
Alw44I GTGCAC 1 cut(s) 289
AoxI GGCC 1 cut(s) 483
ApaLI GTGCAC 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 352, 854
ApoI RAATTY 6 cut(s) 21, 155, 263, 328, 489, 697
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 5 cut(s) 7, 484, 547, 816, 885
AvaII GGWCC 4 cut(s) 7, 547, 816, 885
BaeGI GKGCMC 3 cut(s) 293, 429, 721
BanI GGYRCC 1 cut(s) 716
BbrPI CACGTG 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 883
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 339, 841
BccI CCATC 1 cut(s) 379
BciT130I CCWGG 3 cut(s) 123, 285, 599
BfaI CTAG 2 cut(s) 29, 338
BfoI RGCGCY 1 cut(s) 344
BglI GCCNNNNNGGC 1 cut(s) 127
BisI GCNGC 2 cut(s) 353, 855
BlsI GCNGC 2 cut(s) 354, 856
Bme1390I CCNGG 3 cut(s) 123, 285, 599
Bme18I GGWCC 4 cut(s) 7, 547, 816, 885
BmgT120I GGNCC 5 cut(s) 7, 484, 547, 816, 885
BmiI GGNNCC 3 cut(s) 120, 584, 718
BmrFI CCNGG 3 cut(s) 123, 285, 599
BmsI GCATC 2 cut(s) 34, 413
BpiI GAAGAC 1 cut(s) 883
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpuEI CTTGAG 2 cut(s) 227, 251
BsaAI YACGTR 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 4 cut(s) 168, 283, 284, 761
Bsc4I CCNNNNNNNGG 2 cut(s) 864, 901
Bse1I ACTGG 1 cut(s) 818
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 3 cut(s) 123, 285, 599
BseDI CCNNGG 4 cut(s) 168, 283, 284, 761
BseGI GGATG 3 cut(s) 79, 390, 838
BseLI CCNNNNNNNGG 2 cut(s) 864, 901
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 3 cut(s) 185, 371, 524
BseNI ACTGG 1 cut(s) 818
BseSI GKGCMC 3 cut(s) 293, 429, 721
BseXI GCAGC 2 cut(s) 339, 841
BseYI CCCAGC 1 cut(s) 844
BshFI GGCC 1 cut(s) 485
BshNI GGYRCC 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 293
BslI CCNNNNNNNGG 2 cut(s) 864, 901
BsnI GGCC 1 cut(s) 485
Bsp1286I GDGCHC 3 cut(s) 293, 429, 721
Bsp19I CCATGG 1 cut(s) 761
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 3 cut(s) 186, 370, 523
BspLI GGNNCC 3 cut(s) 120, 584, 718
BspT107I GGYRCC 1 cut(s) 716
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 1 cut(s) 818
BssECI CCNNGG 4 cut(s) 168, 283, 284, 761
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 168, 761
Bst2UI CCWGG 3 cut(s) 123, 285, 599
Bst4CI ACNGT 3 cut(s) 245, 889, 909
Bst6I CTCTTC 2 cut(s) 408, 875
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 2 cut(s) 401, 854
BstBAI YACGTR 1 cut(s) 294
BstC8I GCNNGC 3 cut(s) 128, 618, 641
BstDEI CTNAG 4 cut(s) 131, 194, 357, 510
BstDSI CCRYGG 1 cut(s) 761
BstF5I GGATG 3 cut(s) 79, 390, 838
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 1 cut(s) 343
BstMWI GCNNNNNNNGC 5 cut(s) 127, 288, 349, 401, 854
BstNI CCWGG 3 cut(s) 123, 285, 599
BstNSI RCATGY 2 cut(s) 643, 852
BstSCI CCNGG 3 cut(s) 121, 283, 597
BstSLI GKGCMC 3 cut(s) 293, 429, 721
BstV1I GCAGC 2 cut(s) 339, 841
BstV2I GAAGAC 1 cut(s) 883
BstXI CCANNNNNNTGG 1 cut(s) 17
BsuRI GGCC 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 761
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 3 cut(s) 79, 390, 838
BtsIMutI CAGTG 1 cut(s) 811
Cac8I GCNNGC 3 cut(s) 128, 618, 641
CfoI GCGC 1 cut(s) 343
Cfr13I GGNCC 5 cut(s) 7, 484, 547, 816, 885
CseI GACGC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 474, 595
CviAII CATG 4 cut(s) 640, 762, 849, 864
CviJI RGCY 8 cut(s) 91, 121, 126, 130, 282, 352, 485, 616
CviKI_1 RGCY 8 cut(s) 91, 121, 126, 130, 282, 352, 485, 616
CviQI GTAC 2 cut(s) 474, 595
DdeI CTNAG 4 cut(s) 131, 194, 357, 510
Eam1104I CTCTTC 2 cut(s) 408, 875
EarI CTCTTC 2 cut(s) 408, 875
Eco130I CCWWGG 2 cut(s) 168, 761
Eco47I GGWCC 4 cut(s) 7, 547, 816, 885
Eco72I CACGTG 1 cut(s) 294
EcoRI GAATTC 1 cut(s) 21
EcoRII CCWGG 3 cut(s) 121, 283, 597
EcoT14I CCWWGG 2 cut(s) 168, 761
ErhI CCWWGG 2 cut(s) 168, 761
FaeI CATG 4 cut(s) 643, 765, 852, 867
FalI AAGNNNNNCTT 4 cut(s) 642, 674, 705, 737
FatI CATG 4 cut(s) 639, 761, 848, 863
Fnu4HI GCNGC 2 cut(s) 353, 855
FokI GGATG 3 cut(s) 66, 397, 825
Fsp4HI GCNGC 2 cut(s) 353, 855
FspBI CTAG 2 cut(s) 29, 338
GlaI GCGC 1 cut(s) 342
GluI GCNGC 2 cut(s) 353, 855
GsaI CCCAGC 1 cut(s) 848
HaeII RGCGCY 1 cut(s) 344
HaeIII GGCC 1 cut(s) 485
HgaI GACGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 343
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 4 cut(s) 643, 765, 852, 867
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 6 cut(s) 179, 209, 225, 361, 653, 749
HpaI GTTAAC 1 cut(s) 507
Hpy166II GTNNAC 3 cut(s) 291, 507, 595
Hpy188I TCNGA 4 cut(s) 84, 316, 360, 513
Hpy188III TCNNGA 4 cut(s) 10, 494, 753, 789
Hpy8I GTNNAC 3 cut(s) 291, 507, 595
HpyAV CCTTC 1 cut(s) 864
HpyCH4III ACNGT 3 cut(s) 245, 889, 909
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 8 cut(s) 291, 395, 404, 639, 643, 712, 784, 921
HpyF10VI GCNNNNNNNGC 5 cut(s) 127, 288, 349, 401, 854
HpyF3I CTNAG 4 cut(s) 131, 194, 357, 510
HpySE526I ACGT 1 cut(s) 293
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 4 cut(s) 643, 765, 852, 867
HspAI GCGC 1 cut(s) 341
KspAI GTTAAC 1 cut(s) 507
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 2 cut(s) 339, 841
LweI GCATC 2 cut(s) 34, 413
MaeI CTAG 2 cut(s) 29, 338
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 736
MboII GAAGA 8 cut(s) 185, 188, 209, 425, 614, 662, 883, 892
MfeI CAATTG 1 cut(s) 707
MhlI GDGCHC 3 cut(s) 293, 429, 721
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 657
MseI TTAA 8 cut(s) 239, 267, 462, 506, 518, 660, 900, 931
MslI CAYNNNNRTG 1 cut(s) 188
MspR9I CCNGG 3 cut(s) 123, 285, 599
MunI CAATTG 1 cut(s) 707
MvaI CCWGG 3 cut(s) 123, 285, 599
MwoI GCNNNNNNNGC 5 cut(s) 127, 288, 349, 401, 854
NcoI CCATGG 1 cut(s) 761
NlaIII CATG 4 cut(s) 643, 765, 852, 867
NlaIV GGNNCC 3 cut(s) 120, 584, 718
NmuCI GTSAC 1 cut(s) 736
NspI RCATGY 2 cut(s) 643, 852
OliI CACNNNNGTG 1 cut(s) 188
PaeI GCATGC 1 cut(s) 643
PasI CCCWGGG 1 cut(s) 284
PfeI GAWTC 5 cut(s) 179, 225, 361, 653, 749
PflMI CCANNNNNTGG 1 cut(s) 864
PkrI GCNGC 2 cut(s) 354, 856
PleI GAGTC 1 cut(s) 217
PmaCI CACGTG 1 cut(s) 294
PmlI CACGTG 1 cut(s) 294
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 294
Psp6I CCWGG 3 cut(s) 121, 283, 597
PspCI CACGTG 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 844
PspGI CCWGG 3 cut(s) 121, 283, 597
PspN4I GGNNCC 3 cut(s) 120, 584, 718
PspPI GGNCC 5 cut(s) 7, 484, 547, 816, 885
RsaI GTAC 2 cut(s) 475, 596
RsaNI GTAC 2 cut(s) 474, 595
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 8 cut(s) 239, 267, 462, 506, 518, 660, 900, 931
SatI GCNGC 2 cut(s) 353, 855
Sau96I GGNCC 5 cut(s) 7, 484, 547, 816, 885
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 3 cut(s) 123, 285, 599
SduI GDGCHC 3 cut(s) 293, 429, 721
SetI ASST 9 cut(s) 207, 273, 296, 339, 354, 570, 684, 718, 834
SfaNI GCATC 2 cut(s) 34, 413
SinI GGWCC 4 cut(s) 7, 547, 816, 885
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 206, 230
SmoI CTYRAG 2 cut(s) 206, 230
SphI GCATGC 1 cut(s) 643
SsiI CCGC 1 cut(s) 116
SspI AATATT 1 cut(s) 258
SspMI CTAG 2 cut(s) 29, 338
StyD4I CCNGG 3 cut(s) 121, 283, 597
StyI CCWWGG 2 cut(s) 168, 761
TaaI ACNGT 3 cut(s) 245, 889, 909
TaiI ACGT 1 cut(s) 296
TfiI GAWTC 5 cut(s) 179, 225, 361, 653, 749
Tru1I TTAA 8 cut(s) 239, 267, 462, 506, 518, 660, 900, 931
Tru9I TTAA 8 cut(s) 239, 267, 462, 506, 518, 660, 900, 931
TscAI CASTG 1 cut(s) 818
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 2 cut(s) 352, 854
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 3 cut(s) 148, 449, 714
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 1 cut(s) 818
Van91I CCANNNNNTGG 1 cut(s) 864
VneI GTGCAC 1 cut(s) 289
VpaK11BI GGWCC 4 cut(s) 7, 547, 816, 885
XapI RAATTY 6 cut(s) 21, 155, 263, 328, 489, 697
XceI RCATGY 2 cut(s) 643, 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 291
XspI CTAG 2 cut(s) 29, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.