Rmu_co8395583.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8395583.1
OG0000129
Physical Location & Seq
Forward (+)
1 .. 1194
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8395583.1_g000001.1.cds

Sequence Viewer

Length: 906 bp
ctcgagaccctggacttgagtaattgcagacagcttcaattgctgcccaagaagcttccgttaagtcttcaattcgtgtatgcaaaagattgtacttcactgacagattacccaaatcaaatcgaagtattgactccattggattcgggagtgactaccgtcaattccctcaattcttcagcacttggagtctcagaaatttccagaagctgggtgcttccaagaaatgaagtggaatctccacagctgcgtttgagacatcggcatacagatggcaaacaagttgatcattatttgcccctgagaagcctgtcgcttccaatagaaaaagaattgcagatatcttccagttcaaatttcactttccaacttccaagagatgaaattccagagtggttcagcgctatatctaccagaaatcccatattaatccccatacctcaaaatctgaccaatgataacaagtggaagggatttgccgcgtgtgctatattctcagtcaaggggcatactgctctctcccttattgaaccggatcctgattttcttaattactcgtatcaaatcacattggaaactgatgttgtgcacctggaaccatatgtgttggagtgggatgaatccctccgccgctttggatcaagttctcatctgcttatgattttctatatatctagtttgacatttccacagtggcggttaaataaatcaactgtggtgagtgctatgtttgaaaccaccaatccatccatggtggtcaagaaatgtggaattcgtctagtctatgagcaagatgctagatggttagccagaatagtcggtggggatcaaatgatttggctgaataaagttgaggacgcctctgtattggcgtctggctggcttagtgaatctgagaaatggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

301

Amino Acids

34.31

Weight (kDa)

5.58

Isoelectric Point (pI)

55.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 210
AccII CGCG 1 cut(s) 482
AciI CCGC 4 cut(s) 480, 628, 631, 697
AclWI GGATC 4 cut(s) 530, 543, 646, 834
AcsI RAATTY 4 cut(s) 198, 355, 384, 771
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 2 cut(s) 858, 872
AfaI GTAC 1 cut(s) 94
AfeI AGCGCT 1 cut(s) 403
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 5 cut(s) 38, 71, 354, 530, 734
AjnI CCWGG 2 cut(s) 9, 591
AluBI AGCT 4 cut(s) 34, 55, 210, 247
AluI AGCT 4 cut(s) 34, 55, 210, 247
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 2 cut(s) 196, 250
Alw44I GTGCAC 1 cut(s) 587
AlwI GGATC 4 cut(s) 530, 543, 646, 834
AlwNI CAGNNNCTG 1 cut(s) 210
Ama87I CYCGRG 1 cut(s) 2
Aor51HI AGCGCT 1 cut(s) 403
ApaLI GTGCAC 1 cut(s) 587
ApeKI GCWGC 2 cut(s) 43, 247
ApoI RAATTY 4 cut(s) 198, 355, 384, 771
AseI ATTAAT 1 cut(s) 428
AspLEI GCGC 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 730
AvaI CYCGRG 1 cut(s) 2
BaeGI GKGCMC 1 cut(s) 591
BamHI GGATCC 1 cut(s) 535
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 2 cut(s) 30, 234
BccI CCATC 3 cut(s) 266, 754, 795
BciT130I CCWGG 2 cut(s) 11, 593
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 196, 250
BfaI CTAG 3 cut(s) 675, 779, 798
BfoI RGCGCY 1 cut(s) 405
BisI GCNGC 4 cut(s) 44, 248, 480, 631
BlsI GCNGC 4 cut(s) 45, 249, 481, 632
Bme1390I CCNGG 2 cut(s) 11, 593
BmeT110I CYCGRG 1 cut(s) 2
BmiI GGNNCC 2 cut(s) 537, 597
BmrFI CCNGG 2 cut(s) 11, 593
BmsI GCATC 1 cut(s) 784
BoxI GACNNNNGTC 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 845, 877
BpuEI CTTGAG 1 cut(s) 37
BsaHI GRCGYC 2 cut(s) 858, 872
BsaJI CCNNGG 2 cut(s) 9, 750
BsaWI WCCGGW 1 cut(s) 532
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 348
BseBI CCWGG 2 cut(s) 11, 593
BseDI CCNNGG 2 cut(s) 9, 750
BseGI GGATG 2 cut(s) 622, 746
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 4 cut(s) 207, 293, 510, 885
BseNI ACTGG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 591
BseXI GCAGC 2 cut(s) 30, 234
BseYI CCCAGC 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 591
BsiHKCI CYCGRG 1 cut(s) 2
BsiSI CCGG 1 cut(s) 533
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 196, 250
BsoBI CYCGRG 1 cut(s) 2
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 4 cut(s) 286, 535, 638, 826
Bsp19I CCATGG 1 cut(s) 750
BspACI CCGC 4 cut(s) 480, 628, 631, 697
BspCNI CTCAG 4 cut(s) 206, 294, 509, 886
BspFNI CGCG 1 cut(s) 482
BspLI GGNNCC 2 cut(s) 537, 597
BspPI GGATC 4 cut(s) 530, 543, 646, 834
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 9, 750
BssMI GATC 4 cut(s) 286, 535, 638, 826
BssNI GRCGYC 2 cut(s) 858, 872
BssT1I CCWWGG 1 cut(s) 750
Bst2UI CCWGG 2 cut(s) 11, 593
Bst4CI ACNGT 3 cut(s) 160, 693, 715
BstACI GRCGYC 2 cut(s) 858, 872
BstC8I GCNNGC 1 cut(s) 881
BstDEI CTNAG 5 cut(s) 193, 302, 496, 884, 894
BstDSI CCRYGG 1 cut(s) 750
BstF5I GGATG 2 cut(s) 622, 746
BstFNI CGCG 1 cut(s) 482
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 4 cut(s) 289, 538, 641, 829
BstMAI GTCTC 2 cut(s) 196, 250
BstMBI GATC 4 cut(s) 286, 535, 638, 826
BstMWI GCNNNNNNNGC 3 cut(s) 40, 52, 485
BstNI CCWGG 2 cut(s) 11, 593
BstPAI GACNNNNGTC 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 9, 591
BstSLI GKGCMC 1 cut(s) 591
BstUI CGCG 1 cut(s) 482
BstV1I GCAGC 2 cut(s) 30, 234
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
BtgI CCRYGG 1 cut(s) 750
BtsCI GGATG 2 cut(s) 622, 746
BtsIMutI CAGTG 2 cut(s) 98, 698
Cac8I GCNNGC 1 cut(s) 881
CaiI CAGNNNCTG 1 cut(s) 210
CfoI GCGC 1 cut(s) 404
CseI GACGC 2 cut(s) 861, 866
Csp6I GTAC 1 cut(s) 93
CspCI CAANNNNNGTGG 2 cut(s) 748, 783
CviAII CATG 1 cut(s) 751
CviJI RGCY 9 cut(s) 34, 55, 210, 247, 309, 809, 841, 879, 883
CviKI_1 RGCY 9 cut(s) 34, 55, 210, 247, 309, 809, 841, 879, 883
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 5 cut(s) 193, 302, 496, 884, 894
DpnI GATC 4 cut(s) 288, 537, 640, 828
DpnII GATC 4 cut(s) 286, 535, 638, 826
EciI GGCGGA 1 cut(s) 617
Eco130I CCWWGG 1 cut(s) 750
Eco32I GATATC 1 cut(s) 342
Eco47III AGCGCT 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 2
EcoRI GAATTC 1 cut(s) 771
EcoRII CCWGG 2 cut(s) 9, 591
EcoRV GATATC 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 750
ErhI CCWWGG 1 cut(s) 750
FaeI CATG 1 cut(s) 754
FatI CATG 1 cut(s) 750
FauNDI CATATG 1 cut(s) 601
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 4 cut(s) 44, 248, 480, 631
FokI GGATG 2 cut(s) 629, 733
Fsp4HI GCNGC 4 cut(s) 44, 248, 480, 631
FspBI CTAG 3 cut(s) 675, 779, 798
GlaI GCGC 1 cut(s) 403
GluI GCNGC 4 cut(s) 44, 248, 480, 631
GsaI CCCAGC 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 405
HapII CCGG 1 cut(s) 533
HgaI GACGC 2 cut(s) 861, 866
HhaI GCGC 1 cut(s) 404
Hin1I GRCGYC 2 cut(s) 858, 872
Hin1II CATG 1 cut(s) 754
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 6 cut(s) 133, 143, 189, 236, 620, 890
HpaII CCGG 1 cut(s) 533
HphI GGTGA 1 cut(s) 730
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 3 cut(s) 196, 450, 895
Hpy188III TCNNGA 6 cut(s) 4, 147, 204, 389, 539, 760
Hpy8I GTNNAC 1 cut(s) 589
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 3 cut(s) 160, 693, 715
HpyCH4V TGCA 4 cut(s) 27, 83, 337, 589
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 52, 485
HpyF3I CTNAG 5 cut(s) 193, 302, 496, 884, 894
Hsp92I GRCGYC 2 cut(s) 858, 872
Hsp92II CATG 1 cut(s) 754
HspAI GCGC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 4 cut(s) 286, 535, 638, 826
Lsp1109I GCAGC 2 cut(s) 30, 234
LweI GCATC 1 cut(s) 784
MaeI CTAG 3 cut(s) 675, 779, 798
MaeIII GTNAC 1 cut(s) 151
MalI GATC 4 cut(s) 288, 537, 640, 828
MboI GATC 4 cut(s) 286, 535, 638, 826
MboII GAAGA 3 cut(s) 59, 168, 336
MfeI CAATTG 1 cut(s) 38
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 591
MlyI GAGTC 2 cut(s) 127, 198
MmeI TCCRAC 2 cut(s) 391, 588
MnlI CCTC 5 cut(s) 179, 450, 635, 847, 871
MseI TTAA 4 cut(s) 62, 428, 549, 701
MslI CAYNNNNRTG 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 247
MspI CCGG 1 cut(s) 533
MspR9I CCNGG 2 cut(s) 11, 593
MunI CAATTG 1 cut(s) 38
MvaI CCWGG 2 cut(s) 11, 593
MvnI CGCG 1 cut(s) 482
MwoI GCNNNNNNNGC 3 cut(s) 40, 52, 485
NcoI CCATGG 1 cut(s) 750
NdeI CATATG 1 cut(s) 601
NdeII GATC 4 cut(s) 286, 535, 638, 826
NlaIII CATG 1 cut(s) 754
NlaIV GGNNCC 2 cut(s) 537, 597
NmuCI GTSAC 1 cut(s) 151
PaeR7I CTCGAG 1 cut(s) 2
PfeI GAWTC 4 cut(s) 143, 236, 620, 890
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 4 cut(s) 45, 249, 481, 632
PleI GAGTC 2 cut(s) 127, 197
PpsI GAGTC 2 cut(s) 127, 197
PshAI GACNNNNGTC 1 cut(s) 158
PshBI ATTAAT 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 9, 591
PspFI CCCAGC 1 cut(s) 210
PspGI CCWGG 2 cut(s) 9, 591
PspN4I GGNNCC 2 cut(s) 537, 597
PstNI CAGNNNCTG 1 cut(s) 210
PsuI RGATCY 1 cut(s) 535
PvuII CAGCTG 1 cut(s) 247
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 4 cut(s) 62, 428, 549, 701
SatI GCNGC 4 cut(s) 44, 248, 480, 631
Sau3AI GATC 4 cut(s) 286, 535, 638, 826
SchI GAGTC 2 cut(s) 127, 198
ScrFI CCNGG 2 cut(s) 11, 593
SduI GDGCHC 1 cut(s) 591
SetI ASST 6 cut(s) 36, 57, 212, 249, 442, 594
SfaNI GCATC 1 cut(s) 784
Sfr274I CTCGAG 1 cut(s) 2
SlaI CTCGAG 1 cut(s) 2
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 2 cut(s) 2, 16
SmoI CTYRAG 2 cut(s) 2, 16
SsiI CCGC 4 cut(s) 480, 628, 631, 697
SspMI CTAG 3 cut(s) 675, 779, 798
StyD4I CCNGG 2 cut(s) 9, 591
StyI CCWWGG 1 cut(s) 750
TaaI ACNGT 3 cut(s) 160, 693, 715
TaqI TCGA 2 cut(s) 3, 123
TatI WGTACW 1 cut(s) 92
TauI GCSGC 2 cut(s) 482, 633
TfiI GAWTC 4 cut(s) 143, 236, 620, 890
Tru1I TTAA 4 cut(s) 62, 428, 549, 701
Tru9I TTAA 4 cut(s) 62, 428, 549, 701
TscAI CASTG 2 cut(s) 105, 698
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 43, 247
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 3 cut(s) 243, 396, 633
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 2 cut(s) 105, 698
Van91I CCANNNNNTGG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 587
VspI ATTAAT 1 cut(s) 428
XapI RAATTY 4 cut(s) 198, 355, 384, 771
XcmI CCANNNNNNNNNTGG 1 cut(s) 748
XhoI CTCGAG 1 cut(s) 2
XspI CTAG 3 cut(s) 675, 779, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.