Rh7CG510600

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000129
Physical Location & Seq
Forward (+)
68953663 .. 68954109
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG510600.1

Sequence Viewer

Length: 447 bp
ATGCCTTTCATCAACCAAGGCAACTCTGCAGAAATCCAATTGCCTCTGAATGTGTTCGATGATAATAATTGGTTGGGGTTTGCCGTATGTTCTGGGTTGTCCCATGACCAATATCCTAACATTAGTCTTGGCAGTACTGCCCCTGATTTAGAGAATGTTATGCATAGTCTTCGTTTGCACTCTGATGCTGCTTGGCACGGCTTATTTGATATCACCATGAAGGCATATTTTAGGATACTCGAGCCATTGGAATACGATGCAACTTTGTTCTTTTATATACCGCGCACTAATTGTCTCAGTAAGATGTGGAGGCAATGCAAATTGGCCAGGGTAACTATATGGTGCTCTAGCCCATGCGTAGTTGTGCATAGTTGTGTCCTTCGTCTAGTATTTAAGGAGGACGTTGAACATCTTGTAGAAACATTGACCCTCGCCGAATTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

148

Amino Acids

16.9

Weight (kDa)

5.38

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 5 - 136 9e-07 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 283
AciI CCGC 1 cut(s) 281
AcoI YGGCCR 1 cut(s) 324
AfaI GTAC 1 cut(s) 136
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 1 cut(s) 326
Alw21I GWGCWC 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 239
BalI TGGCCA 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 175
BceAI ACGGC 2 cut(s) 68, 214
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 1 cut(s) 328
BciVI GTATCC 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 2 cut(s) 348, 386
BfmI CTRYAG 1 cut(s) 27
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmcAI AGTACT 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 328
BmeT110I CYCGRG 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 2 cut(s) 175, 247
BpiI GAAGAC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 16, 327
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 16, 327
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 283
BshFI GGCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 347
BsiHKCI CYCGRG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 347
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 309
BspFNI CGCG 1 cut(s) 283
BspMAI CTGCAG 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 16, 327
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 296
BstFNI CGCG 1 cut(s) 283
BstHHI GCGC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 299
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 161
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 326
CfoI GCGC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 135
CviAII CATG 3 cut(s) 104, 217, 354
CviJI RGCY 4 cut(s) 201, 244, 326, 351
CviKI_1 RGCY 4 cut(s) 201, 244, 326, 351
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 16
Eco32I GATATC 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 326
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 16
EcoT22I ATGCAT 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 3 cut(s) 107, 220, 357
FaqI GGGAC 1 cut(s) 85
FatI CATG 3 cut(s) 103, 216, 353
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 348, 386
GlaI GCGC 1 cut(s) 284
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 326
HhaI GCGC 1 cut(s) 285
Hin1II CATG 3 cut(s) 107, 220, 357
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HphI GGTGA 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 48, 184
HpyAV CCTTC 2 cut(s) 214, 389
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 6 cut(s) 29, 163, 178, 260, 318, 367
HpyF3I CTNAG 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 3 cut(s) 107, 220, 357
HspAI GCGC 1 cut(s) 283
LpnPI CCDG 4 cut(s) 78, 156, 313, 340
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 2 cut(s) 175, 247
MaeI CTAG 2 cut(s) 348, 386
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 331
MboII GAAGA 1 cut(s) 161
MfeI CAATTG 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 347
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 5 cut(s) 38, 67, 289, 320, 437
MluNI TGGCCA 1 cut(s) 326
MnlI CCTC 4 cut(s) 54, 303, 391, 440
Mox20I TGGCCA 1 cut(s) 326
Mph1103I ATGCAT 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 53
MscI TGGCCA 1 cut(s) 326
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 2 cut(s) 183, 372
Msp20I TGGCCA 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 328
MunI CAATTG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 1 cut(s) 283
NlaIII CATG 3 cut(s) 107, 220, 357
NsiI ATGCAT 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspXI VCTCGAGB 1 cut(s) 239
PstI CTGCAG 1 cut(s) 31
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
RseI CAYNNNNRTG 2 cut(s) 183, 372
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 1 cut(s) 189
ScaI AGTACT 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 347
SetI ASST 2 cut(s) 405, 445
SfaNI GCATC 2 cut(s) 175, 247
SfcI CTRYAG 1 cut(s) 27
Sfr274I CTCGAG 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 183, 372
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 5 cut(s) 38, 67, 289, 320, 437
SsiI CCGC 1 cut(s) 281
SspMI CTAG 2 cut(s) 348, 386
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 16
TaiI ACGT 1 cut(s) 405
TaqI TCGA 2 cut(s) 57, 240
TasI AATT 5 cut(s) 38, 67, 289, 320, 437
TatI WGTACW 1 cut(s) 134
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 2 cut(s) 348, 386
ZrmI AGTACT 1 cut(s) 136
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.