Rh7BG464800

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000129
Physical Location & Seq
Forward (+)
55033490 .. 55070570
37081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG464800.1

Sequence Viewer

Length: 3288 bp
ATGGATGGCATCTGCAAGATGGAGTGGTTCAGCACTAAATCCACAGGCAATTTCATATCAATCCCGATACCTCCAAATCTGACAGATGATTACAAGTGGAAGGGGGTTGCCTCTTGTGCTGTTTTCTCAGTCAAGGGACATAATATGAGTGCTATCTCCGTTATTGAGTCAGGTTTTGAAACTTCTAATTGCTTGTATCAATGCACACTGGAAACTGATCTTTTCTCTATGAAACCATCTGTCTTTGACGGGGAAGAAAAGCACCACTTCATTAGATCAAGTTCTCATCTGCTTTTCATTTCCTATTTAGCTAGTTTTCATTTTTCAAAGCAGTTGAATCAATCAACTGTGGTGGGGGCTAGGTTTGAAACCAACAACCCATTCATGGACGTCCAGGAATGTGGAATTCGTCTAGTCTATGAGCAAGATGATGGATGGTATACCAAACTGATCCCTGGTGATACTGGGACTTGTCTAAATGAAGTTTTAGACGCTATTCGAGAATCTGACTGGATTAGTGAAGGGGATACGTGTTTGAAATGGGAGAAATTTATTCCACTCTTGGAACAAGACTCCAGAATTCTACTGAGAAAGAAAATCAAGTCTGTTCTTCCAAGATACCTTGAGGCGTTAACACATAATTCTGCAAGGTATAGATTTAACCTCAGTGGAAGCCCAGCATGGTTTGACTACTCATGTGGTCTTAACACTGATACAGGGCCATGGACCTCTGTGTCAATCGAGATTCCTCAGAATCTACACAAGAGTAAGAAGTGGATGGGATTTGCAATATGTGCATCAATTGCAGAGGAACAGCAGCATATGACAGAAGAGGAGTATTGTGTTTACTTTCAATTCATAATGGGTGAATCTAATGAGGATATTCCCCGAGAACTCGAGTATGTTGTGGACATGTGGTCAGAAGAACATAATCGACTTTTGGTTGTTTACATACCGCGAGCAGAGTTTCCCGAAGATTTTATGCATCCATCACCAACTGTAATGAACATTTTCTTCAGAACCAATTGCCCTCATGTAGAGGTTCGAAGAAGTGGGATCCGTATTGTGTACCAGGAAGATTTCCAAGGCTTTGTTGAGACAATCATCCGGTGCATGCAAAGAGAAGATACCCTTGAGCTTTATGATAAATGGGTGGTAGAAGATTGGATAGACTTGATAGGATTGCAAGGTGGTCATTTATGTACTTCAAACAAACTTGATTCCATAACCCGACGAGCAAGAAAGTTCGAATTACTCTCTCAAAAATATAGAAATCAGGACTGGACTGCTCCTTCACTATTCTTTTGTGTATTCTATGGAACTGAAATTTCCAAGTCGAAATGGTTCATGCATTTCAACGAAGGCAACTCTGCAGAAATCCAACTGCCCCCGAATTTGTTTGATGATGCTAATTGGTTAGGCATTGCTGTATGTGCTTTTTTGTGGGTATCCCACGAAGATCCAAACATGATTCTTGGCACTCCTGATTCAGAGTTTAATGTGCTTAGTTGTTGTCTGGACTCTGATGTTTCTTGGGACAGCTTATTTGATGTCAAAATTCAGCATCTTGTGCCGAAACTCAAGCCGTCAGACTTTGCAATTGATTTGACTTTGTTTGTCTATATACCGCGCAATGGTAAATATTTTAAGTTCTGGAGGCAATGCAATCTGGCCAGGGAGCCTTTCTTTTCAGATTTCAGTAGCGCACATCCTACAGATGAAATTCCAGAGTGGTTCAGCGCTATATCTACCAGAAATCCCATATTAAGCCCGATACCTCAAAATCTGGCCGATGATAACAAGTGGAAGGGATTTGCCGCGGGTGCTATATTCTCAGTCAAGGGGCACACTGCTCTCTCCCTTATTGAACCGGATCCTGATTTTTCTAATTACTCGTATCAAGTCACAATCGAAACTGATGTTGTGCGCCTGGAACCACAAGTGTTCGGGCTAGGACTCAGCTGCCTTGCATCAAGTTCTCATCTGCTTATAATTTTCTATATAGAGTGTCTGAAGTTTCCACGATGGGGGTTAAATCAATCAACTGTGGTGAGAGCTATATTTGAAACCACCAATCCATCCATGGTGGTCCAGAAATGTGGAATTCATCTACTCTATGAGCAAGATGCTGGATGGCATTCCAGAATCCGTAGGCATCAACCGATTGTGCTGAATAAAAAGGACGCCGGCTCTCTACGGGATTCTGCCTGGCTTCGTCCATCTTTTAGATGGGAGAAATTCATTCCACCCTTGGAAGAAGAATCCACACGTGTGCTGAGAAAGAACCTGGAGTCTGTTCTTCCAAGATACCTTGAGGCACTAAACTGTTATTCTAAAACGTACAAATTTAACCTCAGTGGAAGGCCAGGGTGGTTTCATGAGTCGTTTGTCTTTCCTCAAAGGGCTGGTTTTACTGTAGCATCAATCAAGCGGCCTCAAAATCTACACAAGAGCAAGAAGTGGATGGGATTTGCAATATATGCATCACTTGTAGAGGAAGTGGGGCAGACAATGGAAAAGGACAACTATTGGGTACGCGTATTTGTTACACTAACTGGGGATAAATTTCGTATGGGTGTGGCCCGAGTACTTAAGCACGTCAGGCCATTGTCAGAAGAACATCATCAACTATTGGTTATTTACATACCACGGGCACAAGTTCCTGAAGTGTTGTTCACTCAGACATTAACAACTGCAATGGACTTTTACATCAAGATCAGTGATAGCGCTCATGTAAAGGTTCAAACATGTGGGTTCCGTATTGTGTACCAAGAAGATATACAAGGGTTTGCTGATACAATTATCCGGTGCATGCAAAGGGAAGATTCTCTTAAATCTCACAATAAGTTGGTGGTAGAACAATGGATACGATTGATACGATGGCAAGGTGCCCTAAATTTAGAGAGAATGACAGAACAAGATTCTAGAACCCCACGGGAAAAACAATTTCAATTGCACTTACAAAAATATAGAAATTGGGACTGGTCTGACCCTCATCCTGTTTGTTGTCACTTCGAGGGAGCTGAAATTTTCAAGTTGAAATGGTTCATGCCTTTCATCAACCAAGGCAACTCTGCAGAAATCCAACTGCCTCTGAATGTGTTCAATGATGATAATTGGTTGGGCTTTGCCTGCCGATTCTGGTCTTCTGTTACAATACTTAAAGGATTGAAGTCTGAGTTCAATCCTTGGCCAAAGGGAAAGAAGACATGTGGCACAGGACCACTTCTTACATCAGGTATTCTTGGAACTATTCCGCTTGGGCTTCTTACAAAAGAGAGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1095

Amino Acids

126.73

Weight (kDa)

6.12

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 226 - 360 5.8e-06 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1991
AasI GACNNNNNNGTC 1 cut(s) 733
AatII GACGTC 1 cut(s) 393
AccB1I GGYRCC 1 cut(s) 2888
AccI GTMKAC 1 cut(s) 440
AccII CGCG 4 cut(s) 958, 1630, 1820, 2538
AciI CCGC 6 cut(s) 956, 1628, 1818, 1820, 2431, 3257
AclWI GGATC 6 cut(s) 445, 1051, 1064, 1454, 1868, 1881
AcoI YGGCCR 3 cut(s) 1671, 1788, 3191
AcuI CTGAAG 3 cut(s) 1000, 2033, 2685
AcvI CACGTG 1 cut(s) 2270
AcyI GRCGYC 2 cut(s) 390, 2184
AfaI GTAC 6 cut(s) 1070, 1204, 2342, 2535, 2589, 2768
AfeI AGCGCT 2 cut(s) 1741, 2728
AfiI CCNNNNNNNGG 3 cut(s) 385, 1634, 2027
AflII CTTAAG 1 cut(s) 2591
AflIII ACRYGT 7 cut(s) 530, 912, 2267, 2269, 2536, 2747, 3209
AhdI GACNNNNNGTC 1 cut(s) 916
AjiI CACGTC 1 cut(s) 2599
AjnI CCWGG 8 cut(s) 393, 454, 1071, 1673, 1929, 2207, 2286, 2365
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AleI CACNNNNGTG 1 cut(s) 2270
AluBI AGCT 6 cut(s) 311, 1138, 1542, 1962, 2057, 3023
AluI AGCT 6 cut(s) 311, 1138, 1542, 1962, 2057, 3023
Alw26I GTCTC 1 cut(s) 1091
AlwI GGATC 6 cut(s) 445, 1051, 1064, 1454, 1868, 1881
Ama87I CYCGRG 3 cut(s) 888, 896, 2583
Aor51HI AGCGCT 2 cut(s) 1741, 2728
AoxI GGCC 8 cut(s) 719, 1671, 1788, 2363, 2432, 2580, 2603, 3191
ApeKI GCWGC 2 cut(s) 817, 1962
ArsI GACNNNNNNTTYG 2 cut(s) 1529, 1561
Asp700I GAANNNNTTC 4 cut(s) 1010, 1343, 3044, 3101
AspLEI GCGC 5 cut(s) 1632, 1706, 1742, 1929, 2729
AspS9I GGNCC 5 cut(s) 719, 726, 2089, 2581, 3221
AsuHPI GGTGA 4 cut(s) 470, 878, 984, 2062
AsuII TTCGAA 2 cut(s) 1045, 1248
AvaI CYCGRG 3 cut(s) 888, 896, 2583
AvaII GGWCC 3 cut(s) 726, 2089, 3221
BaeGI GKGCMC 3 cut(s) 1848, 2656, 2893
BalI TGGCCA 2 cut(s) 1673, 3193
BamHI GGATCC 2 cut(s) 1056, 1873
BanI GGYRCC 1 cut(s) 2888
BbrPI CACGTG 1 cut(s) 2270
BbsI GAAGAC 2 cut(s) 3138, 3212
BbvI GCAGC 2 cut(s) 829, 1949
BceAI ACGGC 1 cut(s) 1570
BciT130I CCWGG 8 cut(s) 395, 456, 1073, 1675, 1931, 2209, 2288, 2367
BciVI GTATCC 3 cut(s) 520, 1459, 2859
BcoDI GTCTC 1 cut(s) 1091
BfaI CTAG 5 cut(s) 312, 360, 413, 1952, 2925
BfmI CTRYAG 4 cut(s) 1371, 1713, 2415, 3075
BfoI RGCGCY 2 cut(s) 1743, 2730
BfrI CTTAAG 1 cut(s) 2591
BfuI GTATCC 3 cut(s) 520, 1459, 2859
BisI GCNGC 4 cut(s) 818, 1818, 1963, 2432
BlsI GCNGC 4 cut(s) 819, 1819, 1964, 2433
BmcAI AGTACT 1 cut(s) 2589
Bme1390I CCNGG 8 cut(s) 395, 456, 1073, 1675, 1931, 2209, 2288, 2367
Bme18I GGWCC 3 cut(s) 726, 2089, 3221
BmeRI GACNNNNNGTC 1 cut(s) 916
BmeT110I CYCGRG 3 cut(s) 888, 896, 2583
BmgBI CACGTC 1 cut(s) 2599
BmgT120I GGNCC 5 cut(s) 719, 726, 2089, 2581, 3221
BmiI GGNNCC 6 cut(s) 1058, 1680, 1875, 1935, 2756, 2890
BmrFI CCNGG 8 cut(s) 395, 456, 1073, 1675, 1931, 2209, 2288, 2367
BmrI ACTGGG 2 cut(s) 474, 2565
BmuI ACTGGG 2 cut(s) 474, 2565
BpiI GAAGAC 2 cut(s) 3138, 3212
BpmI CTGGAG 3 cut(s) 559, 1675, 2309
Bpu14I TTCGAA 2 cut(s) 1045, 1248
BpuEI CTTGAG 4 cut(s) 644, 1154, 1565, 2333
BsaAI YACGTR 2 cut(s) 531, 2270
BsaHI GRCGYC 2 cut(s) 390, 2184
BsaWI WCCGGW 3 cut(s) 1107, 1870, 2805
Bsc4I CCNNNNNNNGG 3 cut(s) 385, 1634, 2027
Bse118I RCCGGY 1 cut(s) 2186
Bse1I ACTGG 6 cut(s) 213, 469, 515, 1286, 2560, 2987
Bse3DI GCAATG 4 cut(s) 1422, 1639, 1667, 2703
BseBI CCWGG 8 cut(s) 395, 456, 1073, 1675, 1931, 2209, 2288, 2367
BseLI CCNNNNNNNGG 3 cut(s) 385, 1634, 2027
BseMI GCAATG 4 cut(s) 1422, 1639, 1667, 2703
BseNI ACTGG 6 cut(s) 213, 469, 515, 1286, 2560, 2987
BseRI GAGGAG 1 cut(s) 848
BseSI GKGCMC 3 cut(s) 1848, 2656, 2893
BseXI GCAGC 2 cut(s) 829, 1949
BseYI CCCAGC 1 cut(s) 676
Bsh1236I CGCG 4 cut(s) 958, 1630, 1820, 2538
BshFI GGCC 8 cut(s) 721, 1673, 1790, 2365, 2434, 2582, 2605, 3193
BshNI GGYRCC 1 cut(s) 2888
BsiHKCI CYCGRG 3 cut(s) 888, 896, 2583
BsiSI CCGG 4 cut(s) 1108, 1871, 2187, 2806
BslFI GGGAC 4 cut(s) 150, 481, 1550, 2993
BslI CCNNNNNNNGG 3 cut(s) 385, 1634, 2027
BsmAI GTCTC 1 cut(s) 1091
BsmFI GGGAC 4 cut(s) 150, 481, 1550, 2993
BsmI GAATGC 1 cut(s) 2137
BsnI GGCC 8 cut(s) 721, 1673, 1790, 2365, 2434, 2582, 2605, 3193
BsoBI CYCGRG 3 cut(s) 888, 896, 2583
Bsp119I TTCGAA 2 cut(s) 1045, 1248
Bsp1286I GDGCHC 3 cut(s) 1848, 2656, 2893
Bsp143I GATC 7 cut(s) 217, 275, 450, 1056, 1459, 1873, 2715
Bsp19I CCATGG 2 cut(s) 722, 2082
BspACI CCGC 6 cut(s) 956, 1628, 1818, 1820, 2431, 3257
BspANI GGCC 8 cut(s) 721, 1673, 1790, 2365, 2434, 2582, 2605, 3193
BspFNI CGCG 4 cut(s) 958, 1630, 1820, 2538
BspHI TCATGA 1 cut(s) 2377
BspLI GGNNCC 6 cut(s) 1058, 1680, 1875, 1935, 2756, 2890
BspMAI CTGCAG 2 cut(s) 1375, 3079
BspPI GGATC 6 cut(s) 445, 1051, 1064, 1454, 1868, 1881
BspT104I TTCGAA 2 cut(s) 1045, 1248
BspT107I GGYRCC 1 cut(s) 2888
BspTI CTTAAG 1 cut(s) 2591
BsrDI GCAATG 4 cut(s) 1422, 1639, 1667, 2703
BsrFI RCCGGY 1 cut(s) 2186
BsrI ACTGG 6 cut(s) 213, 469, 515, 1286, 2560, 2987
BssAI RCCGGY 1 cut(s) 2186
BssMI GATC 7 cut(s) 217, 275, 450, 1056, 1459, 1873, 2715
BssNAI GTATAC 1 cut(s) 441
BssNI GRCGYC 2 cut(s) 390, 2184
BssT1I CCWWGG 6 cut(s) 722, 1084, 2082, 2250, 3064, 3188
Bst1107I GTATAC 1 cut(s) 441
Bst2UI CCWGG 8 cut(s) 395, 456, 1073, 1675, 1931, 2209, 2288, 2367
Bst4CI ACNGT 5 cut(s) 349, 1000, 2047, 2327, 2416
Bst6I CTCTTC 1 cut(s) 825
BstACI GRCGYC 2 cut(s) 390, 2184
BstAFI CTTAAG 1 cut(s) 2591
BstAPI GCANNNNNTGC 4 cut(s) 794, 803, 1570, 2480
BstBAI YACGTR 2 cut(s) 531, 2270
BstBI TTCGAA 2 cut(s) 1045, 1248
BstC8I GCNNGC 5 cut(s) 960, 1115, 2188, 2813, 3133
BstDSI CCRYGG 5 cut(s) 722, 1818, 2082, 2648, 2933
BstFNI CGCG 4 cut(s) 958, 1630, 1820, 2538
BstH2I RGCGCY 2 cut(s) 1743, 2730
BstHHI GCGC 5 cut(s) 1632, 1706, 1742, 1929, 2729
BstKTI GATC 7 cut(s) 220, 278, 453, 1059, 1462, 1876, 2718
BstMAI GTCTC 1 cut(s) 1091
BstMBI GATC 7 cut(s) 217, 275, 450, 1056, 1459, 1873, 2715
BstMWI GCNNNNNNNGC 9 cut(s) 116, 794, 803, 1433, 1570, 1823, 2480, 2602, 3132
BstNI CCWGG 8 cut(s) 395, 456, 1073, 1675, 1931, 2209, 2288, 2367
BstNSI RCATGY 5 cut(s) 916, 1117, 2751, 2815, 3213
BstSCI CCNGG 8 cut(s) 393, 454, 1071, 1673, 1929, 2207, 2286, 2365
BstSFI CTRYAG 4 cut(s) 1371, 1713, 2415, 3075
BstSLI GKGCMC 3 cut(s) 1848, 2656, 2893
BstUI CGCG 4 cut(s) 958, 1630, 1820, 2538
BstV1I GCAGC 2 cut(s) 829, 1949
BstV2I GAAGAC 2 cut(s) 3138, 3212
BstX2I RGATCY 3 cut(s) 1056, 1459, 1873
BstXI CCANNNNNNTGG 2 cut(s) 401, 2099
BstYI RGATCY 3 cut(s) 1056, 1459, 1873
BstZ17I GTATAC 1 cut(s) 441
BsuI GTATCC 3 cut(s) 520, 1459, 2859
BsuRI GGCC 8 cut(s) 721, 1673, 1790, 2365, 2434, 2582, 2605, 3193
BtgI CCRYGG 5 cut(s) 722, 1818, 2082, 2648, 2933
BtrI CACGTC 1 cut(s) 2599
BtsI GCAGTG 1 cut(s) 1848
BtsIMutI CAGTG 6 cut(s) 206, 673, 708, 1848, 2362, 2725
Cac8I GCNNGC 5 cut(s) 960, 1115, 2188, 2813, 3133
CciI TCATGA 1 cut(s) 2377
CfoI GCGC 5 cut(s) 1632, 1706, 1742, 1929, 2729
Cfr10I RCCGGY 1 cut(s) 2186
Cfr13I GGNCC 5 cut(s) 719, 726, 2089, 2581, 3221
Cfr42I CCGCGG 1 cut(s) 1821
CseI GACGC 2 cut(s) 500, 2192
Csp6I GTAC 6 cut(s) 1069, 1203, 2341, 2534, 2588, 2767
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviQI GTAC 6 cut(s) 1069, 1203, 2341, 2534, 2588, 2767
DpnI GATC 7 cut(s) 219, 277, 452, 1058, 1461, 1875, 2717
DpnII GATC 7 cut(s) 217, 275, 450, 1056, 1459, 1873, 2715
DrdI GACNNNNNNGTC 1 cut(s) 733
DriI GACNNNNNGTC 1 cut(s) 916
DseDI GACNNNNNNGTC 1 cut(s) 733
EaeI YGGCCR 3 cut(s) 1671, 1788, 3191
Eam1104I CTCTTC 1 cut(s) 825
Eam1105I GACNNNNNGTC 1 cut(s) 916
EarI CTCTTC 1 cut(s) 825
Eco130I CCWWGG 6 cut(s) 722, 1084, 2082, 2250, 3064, 3188
Eco47I GGWCC 3 cut(s) 726, 2089, 3221
Eco47III AGCGCT 2 cut(s) 1741, 2728
Eco57I CTGAAG 3 cut(s) 1000, 2033, 2685
Eco72I CACGTG 1 cut(s) 2270
Eco88I CYCGRG 3 cut(s) 888, 896, 2583
EcoRI GAATTC 3 cut(s) 405, 579, 2103
EcoRII CCWGG 8 cut(s) 393, 454, 1071, 1673, 1929, 2207, 2286, 2365
EcoT14I CCWWGG 6 cut(s) 722, 1084, 2082, 2250, 3064, 3188
EcoT22I ATGCAT 3 cut(s) 987, 1353, 2485
ErhI CCWWGG 6 cut(s) 722, 1084, 2082, 2250, 3064, 3188
FalI AAGNNNNNCTT 6 cut(s) 251, 283, 1116, 1148, 2814, 2846
FaqI GGGAC 4 cut(s) 150, 481, 1550, 2993
FauI CCCGC 1 cut(s) 1813
FauNDI CATATG 1 cut(s) 822
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 4 cut(s) 818, 1818, 1963, 2432
Fsp4HI GCNGC 4 cut(s) 818, 1818, 1963, 2432
FspBI CTAG 5 cut(s) 312, 360, 413, 1952, 2925
GlaI GCGC 5 cut(s) 1631, 1705, 1741, 1928, 2728
GluI GCNGC 4 cut(s) 818, 1818, 1963, 2432
GsaI CCCAGC 1 cut(s) 680
GsuI CTGGAG 3 cut(s) 559, 1675, 2309
HaeII RGCGCY 2 cut(s) 1743, 2730
HaeIII GGCC 8 cut(s) 721, 1673, 1790, 2365, 2434, 2582, 2605, 3193
HapII CCGG 4 cut(s) 1108, 1871, 2187, 2806
HgaI GACGC 2 cut(s) 500, 2192
HhaI GCGC 5 cut(s) 1632, 1706, 1742, 1929, 2729
Hin1I GRCGYC 2 cut(s) 390, 2184
Hin6I GCGC 5 cut(s) 1630, 1704, 1740, 1927, 2727
HinP1I GCGC 5 cut(s) 1630, 1704, 1740, 1927, 2727
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HpaI GTTAAC 1 cut(s) 633
HpaII CCGG 4 cut(s) 1108, 1871, 2187, 2806
HphI GGTGA 4 cut(s) 470, 878, 984, 2062
Hpy166II GTNNAC 8 cut(s) 441, 633, 847, 910, 949, 1069, 2676, 2767
Hpy8I GTNNAC 8 cut(s) 441, 633, 847, 910, 949, 1069, 2676, 2767
Hpy99I CGWCG 1 cut(s) 1236
HpyAV CCTTC 6 cut(s) 94, 515, 1302, 1355, 1801, 2355
HpyCH4III ACNGT 5 cut(s) 349, 1000, 2047, 2327, 2416
HpyCH4IV ACGT 5 cut(s) 390, 530, 2269, 2339, 2598
HpyF10VI GCNNNNNNNGC 9 cut(s) 116, 794, 803, 1433, 1570, 1823, 2480, 2602, 3132
HpySE526I ACGT 5 cut(s) 390, 530, 2269, 2339, 2598
Hsp92I GRCGYC 2 cut(s) 390, 2184
HspAI GCGC 5 cut(s) 1630, 1704, 1740, 1927, 2727
KroI GCCGGC 1 cut(s) 2186
KroNI GCCGGC 1 cut(s) 2188
KspAI GTTAAC 1 cut(s) 633
KspI CCGCGG 1 cut(s) 1821
Kzo9I GATC 7 cut(s) 217, 275, 450, 1056, 1459, 1873, 2715
LmnI GCTCC 3 cut(s) 1294, 1678, 3020
Lsp1109I GCAGC 2 cut(s) 829, 1949
MaeI CTAG 5 cut(s) 312, 360, 413, 1952, 2925
MaeII ACGT 5 cut(s) 390, 530, 2269, 2339, 2598
MaeIII GTNAC 4 cut(s) 1903, 2545, 3008, 3151
MalI GATC 7 cut(s) 219, 277, 452, 1058, 1461, 1875, 2717
MboI GATC 7 cut(s) 217, 275, 450, 1056, 1459, 1873, 2715
MfeI CAATTG 4 cut(s) 801, 1024, 1599, 2951
MflI RGATCY 3 cut(s) 1056, 1459, 1873
MhlI GDGCHC 3 cut(s) 1848, 2656, 2893
MlsI TGGCCA 2 cut(s) 1673, 3193
MluI ACGCGT 1 cut(s) 2536
MluNI TGGCCA 2 cut(s) 1673, 3193
MlyI GAGTC 6 cut(s) 176, 566, 1514, 1950, 2300, 2390
MmeI TCCRAC 2 cut(s) 1405, 3109
Mox20I TGGCCA 2 cut(s) 1673, 3193
Mph1103I ATGCAT 3 cut(s) 987, 1353, 2485
MroNI GCCGGC 1 cut(s) 2186
MroXI GAANNNNTTC 4 cut(s) 1010, 1343, 3044, 3101
MscI TGGCCA 2 cut(s) 1673, 3193
MslI CAYNNNNRTG 1 cut(s) 2270
Msp20I TGGCCA 2 cut(s) 1673, 3193
MspA1I CMGCKG 2 cut(s) 1820, 1962
MspCI CTTAAG 1 cut(s) 2591
MspI CCGG 4 cut(s) 1108, 1871, 2187, 2806
MspR9I CCNGG 8 cut(s) 395, 456, 1073, 1675, 1931, 2209, 2288, 2367
MunI CAATTG 4 cut(s) 801, 1024, 1599, 2951
Mva1269I GAATGC 1 cut(s) 2137
MvaI CCWGG 8 cut(s) 395, 456, 1073, 1675, 1931, 2209, 2288, 2367
MvnI CGCG 4 cut(s) 958, 1630, 1820, 2538
MwoI GCNNNNNNNGC 9 cut(s) 116, 794, 803, 1433, 1570, 1823, 2480, 2602, 3132
NaeI GCCGGC 1 cut(s) 2188
NcoI CCATGG 2 cut(s) 722, 2082
NdeI CATATG 1 cut(s) 822
NdeII GATC 7 cut(s) 217, 275, 450, 1056, 1459, 1873, 2715
NgoMIV GCCGGC 1 cut(s) 2186
NlaIV GGNNCC 6 cut(s) 1058, 1680, 1875, 1935, 2756, 2890
NmuCI GTSAC 2 cut(s) 1903, 3008
NsiI ATGCAT 3 cut(s) 987, 1353, 2485
NspI RCATGY 5 cut(s) 916, 1117, 2751, 2815, 3213
NspV TTCGAA 2 cut(s) 1045, 1248
OliI CACNNNNGTG 1 cut(s) 2270
PaeI GCATGC 2 cut(s) 1117, 2815
PaeR7I CTCGAG 1 cut(s) 896
PagI TCATGA 1 cut(s) 2377
PciI ACATGT 3 cut(s) 912, 2747, 3209
PcsI WCGNNNNNNNCGW 1 cut(s) 2875
PctI GAATGC 1 cut(s) 2137
PdiI GCCGGC 1 cut(s) 2188
PdmI GAANNNNTTC 4 cut(s) 1010, 1343, 3044, 3101
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 4 cut(s) 819, 1819, 1964, 2433
PleI GAGTC 6 cut(s) 175, 566, 1514, 1950, 2299, 2389
PmaCI CACGTG 1 cut(s) 2270
PmlI CACGTG 1 cut(s) 2270
PpsI GAGTC 6 cut(s) 175, 566, 1514, 1950, 2299, 2389
Ppu21I YACGTR 2 cut(s) 531, 2270
PscI ACATGT 3 cut(s) 912, 2747, 3209
PsiI TTATAA 1 cut(s) 1991
Psp6I CCWGG 8 cut(s) 393, 454, 1071, 1673, 1929, 2207, 2286, 2365
PspCI CACGTG 1 cut(s) 2270
PspFI CCCAGC 1 cut(s) 676
PspGI CCWGG 8 cut(s) 393, 454, 1071, 1673, 1929, 2207, 2286, 2365
PspN4I GGNNCC 6 cut(s) 1058, 1680, 1875, 1935, 2756, 2890
PspPI GGNCC 5 cut(s) 719, 726, 2089, 2581, 3221
PspXI VCTCGAGB 1 cut(s) 896
PsrI GAACNNNNNNTAC 2 cut(s) 2850, 2882
PstI CTGCAG 2 cut(s) 1375, 3079
PsuI RGATCY 3 cut(s) 1056, 1459, 1873
PvuII CAGCTG 1 cut(s) 1962
RsaI GTAC 6 cut(s) 1070, 1204, 2342, 2535, 2589, 2768
RsaNI GTAC 6 cut(s) 1069, 1203, 2341, 2534, 2588, 2767
RseI CAYNNNNRTG 1 cut(s) 2270
SacII CCGCGG 1 cut(s) 1821
SatI GCNGC 4 cut(s) 818, 1818, 1963, 2432
Sau3AI GATC 7 cut(s) 217, 275, 450, 1056, 1459, 1873, 2715
Sau96I GGNCC 5 cut(s) 719, 726, 2089, 2581, 3221
ScaI AGTACT 1 cut(s) 2589
SchI GAGTC 6 cut(s) 176, 566, 1514, 1950, 2300, 2390
ScrFI CCNGG 8 cut(s) 395, 456, 1073, 1675, 1931, 2209, 2288, 2367
SduI GDGCHC 3 cut(s) 1848, 2656, 2893
SfcI CTRYAG 4 cut(s) 1371, 1713, 2415, 3075
Sfr274I CTCGAG 1 cut(s) 896
Sfr303I CCGCGG 1 cut(s) 1821
SfuI TTCGAA 2 cut(s) 1045, 1248
SgrBI CCGCGG 1 cut(s) 1821
SinI GGWCC 3 cut(s) 726, 2089, 3221
SlaI CTCGAG 1 cut(s) 896
SmiMI CAYNNNNRTG 1 cut(s) 2270
SmlI CTYRAG 6 cut(s) 623, 896, 1133, 1580, 2312, 2591
SmoI CTYRAG 6 cut(s) 623, 896, 1133, 1580, 2312, 2591
SphI GCATGC 2 cut(s) 1117, 2815
SsiI CCGC 6 cut(s) 956, 1628, 1818, 1820, 2431, 3257
SspI AATATT 1 cut(s) 1643
SspMI CTAG 5 cut(s) 312, 360, 413, 1952, 2925
StyD4I CCNGG 8 cut(s) 393, 454, 1071, 1673, 1929, 2207, 2286, 2365
StyI CCWWGG 6 cut(s) 722, 1084, 2082, 2250, 3064, 3188
TaaI ACNGT 5 cut(s) 349, 1000, 2047, 2327, 2416
TaiI ACGT 5 cut(s) 393, 533, 2272, 2342, 2601
TaqI TCGA 9 cut(s) 499, 741, 897, 934, 1045, 1248, 1337, 1911, 3015
TatI WGTACW 2 cut(s) 1202, 2587
TauI GCSGC 2 cut(s) 1820, 2434
TscAI CASTG 6 cut(s) 213, 673, 715, 1855, 2362, 2725
TseFI GTSAC 2 cut(s) 1903, 3008
TseI GCWGC 2 cut(s) 817, 1962
Tsp45I GTSAC 2 cut(s) 1903, 3008
TspGWI ACGGA 4 cut(s) 148, 1049, 2138, 2747
TspRI CASTG 6 cut(s) 213, 673, 715, 1855, 2362, 2725
Vha464I CTTAAG 1 cut(s) 2591
VpaK11BI GGWCC 3 cut(s) 726, 2089, 3221
XbaI TCTAGA 1 cut(s) 2924
XceI RCATGY 5 cut(s) 916, 1117, 2751, 2815, 3213
XcmI CCANNNNNNNNNTGG 2 cut(s) 2080, 2226
XhoI CTCGAG 1 cut(s) 896
XmiI GTMKAC 1 cut(s) 440
XmnI GAANNNNTTC 4 cut(s) 1010, 1343, 3044, 3101
XspI CTAG 5 cut(s) 312, 360, 413, 1952, 2925
ZraI GACGTC 1 cut(s) 391
ZrmI AGTACT 1 cut(s) 2589
Zsp2I ATGCAT 3 cut(s) 987, 1353, 2485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.