Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| EF_TS | PF00889 | 148 - 387 | 7.5e-55 | Elongation factor TS |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 257 |
| AccII | CGCG | 1 cut(s) | 846 |
| AciI | CCGC | 1 cut(s) | 1212 |
| AclWI | GGATC | 1 cut(s) | 1123 |
| AcoI | YGGCCR | 2 cut(s) | 85, 984 |
| AcsI | RAATTY | 3 cut(s) | 792, 942, 1198 |
| AcuI | CTGAAG | 1 cut(s) | 365 |
| AdeI | CACNNNGTG | 1 cut(s) | 734 |
| AfaI | GTAC | 1 cut(s) | 967 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 185, 186, 770, 776 |
| AflIII | ACRYGT | 1 cut(s) | 907 |
| AgsI | TTSAA | 7 cut(s) | 39, 500, 542, 604, 617, 1169, 1178 |
| AjnI | CCWGG | 2 cut(s) | 562, 769 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 141, 173 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 268, 300 |
| AluBI | AGCT | 7 cut(s) | 71, 122, 515, 530, 725, 1099, 1137 |
| AluI | AGCT | 7 cut(s) | 71, 122, 515, 530, 725, 1099, 1137 |
| Alw21I | GWGCWC | 2 cut(s) | 286, 826 |
| Alw26I | GTCTC | 7 cut(s) | 112, 137, 160, 240, 461, 957, 981 |
| AlwI | GGATC | 1 cut(s) | 1123 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 74 |
| AoxI | GGCC | 3 cut(s) | 85, 984, 1209 |
| ApeKI | GCWGC | 6 cut(s) | 77, 305, 338, 443, 671, 878 |
| ApoI | RAATTY | 3 cut(s) | 792, 942, 1198 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 400, 495, 1035, 1164 |
| AspLEI | GCGC | 1 cut(s) | 846 |
| AsuHPI | GGTGA | 1 cut(s) | 1110 |
| BalI | TGGCCA | 1 cut(s) | 986 |
| Bbv12I | GWGCWC | 2 cut(s) | 286, 826 |
| BbvCI | CCTCAGC | 1 cut(s) | 1206 |
| BbvI | GCAGC | 6 cut(s) | 64, 292, 325, 430, 658, 865 |
| BccI | CCATC | 3 cut(s) | 845, 976, 1141 |
| BciT130I | CCWGG | 2 cut(s) | 564, 771 |
| BcoDI | GTCTC | 7 cut(s) | 112, 137, 160, 240, 461, 957, 981 |
| BfaI | CTAG | 1 cut(s) | 483 |
| BfmI | CTRYAG | 3 cut(s) | 66, 672, 720 |
| BisI | GCNGC | 7 cut(s) | 78, 306, 339, 444, 672, 879, 1212 |
| BlsI | GCNGC | 7 cut(s) | 79, 307, 340, 445, 673, 880, 1213 |
| Bme1390I | CCNGG | 2 cut(s) | 564, 771 |
| BmiI | GGNNCC | 1 cut(s) | 561 |
| BmrFI | CCNGG | 2 cut(s) | 564, 771 |
| BmsI | GCATC | 7 cut(s) | 236, 386, 518, 705, 823, 910, 1190 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1206 |
| BpuEI | CTTGAG | 2 cut(s) | 117, 932 |
| BsaAI | YACGTR | 1 cut(s) | 747 |
| BsaI | GGTCTC | 1 cut(s) | 137 |
| BsaJI | CCNNGG | 4 cut(s) | 31, 88, 563, 582 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 268, 298, 1037, 1067 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 185, 186, 770, 776 |
| Bse1I | ACTGG | 2 cut(s) | 279, 426 |
| Bse3DI | GCAATG | 3 cut(s) | 576, 783, 870 |
| BseBI | CCWGG | 2 cut(s) | 564, 771 |
| BseDI | CCNNGG | 4 cut(s) | 31, 88, 563, 582 |
| BseGI | GGATG | 5 cut(s) | 619, 837, 838, 1152, 1181 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 185, 186, 770, 776 |
| BseMI | GCAATG | 3 cut(s) | 576, 783, 870 |
| BseMII | CTCAG | 6 cut(s) | 280, 396, 440, 968, 992, 1197 |
| BseNI | ACTGG | 2 cut(s) | 279, 426 |
| BseXI | GCAGC | 6 cut(s) | 64, 292, 325, 430, 658, 865 |
| BsgI | GTGCAG | 1 cut(s) | 324 |
| Bsh1236I | CGCG | 1 cut(s) | 846 |
| BshFI | GGCC | 3 cut(s) | 87, 986, 1211 |
| BsiHKAI | GWGCWC | 2 cut(s) | 286, 826 |
| BslFI | GGGAC | 1 cut(s) | 747 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 185, 186, 770, 776 |
| BsmAI | GTCTC | 7 cut(s) | 112, 137, 160, 240, 461, 957, 981 |
| BsmBI | CGTCTC | 1 cut(s) | 240 |
| BsmFI | GGGAC | 1 cut(s) | 747 |
| BsmI | GAATGC | 1 cut(s) | 658 |
| BsnI | GGCC | 3 cut(s) | 87, 986, 1211 |
| Bso31I | GGTCTC | 1 cut(s) | 137 |
| Bsp1286I | GDGCHC | 2 cut(s) | 286, 826 |
| Bsp143I | GATC | 2 cut(s) | 56, 1115 |
| BspACI | CCGC | 1 cut(s) | 1212 |
| BspANI | GGCC | 3 cut(s) | 87, 986, 1211 |
| BspCNI | CTCAG | 6 cut(s) | 279, 397, 439, 967, 991, 1198 |
| BspFNI | CGCG | 1 cut(s) | 846 |
| BspLI | GGNNCC | 1 cut(s) | 561 |
| BspMAI | CTGCAG | 1 cut(s) | 676 |
| BspPI | GGATC | 1 cut(s) | 1123 |
| BspTNI | GGTCTC | 1 cut(s) | 137 |
| BsrDI | GCAATG | 3 cut(s) | 576, 783, 870 |
| BsrI | ACTGG | 2 cut(s) | 279, 426 |
| BssECI | CCNNGG | 4 cut(s) | 31, 88, 563, 582 |
| BssMI | GATC | 2 cut(s) | 56, 1115 |
| BssT1I | CCWWGG | 1 cut(s) | 31 |
| Bst2UI | CCWGG | 2 cut(s) | 564, 771 |
| Bst4CI | ACNGT | 3 cut(s) | 45, 464, 646 |
| Bst6I | CTCTTC | 1 cut(s) | 355 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 532 |
| BstBAI | YACGTR | 1 cut(s) | 747 |
| BstC8I | GCNNGC | 2 cut(s) | 417, 528 |
| BstDEI | CTNAG | 9 cut(s) | 206, 266, 405, 426, 698, 954, 978, 1104, 1206 |
| BstF5I | GGATG | 5 cut(s) | 619, 837, 838, 1152, 1181 |
| BstFNI | CGCG | 1 cut(s) | 846 |
| BstHHI | GCGC | 1 cut(s) | 846 |
| BstKTI | GATC | 2 cut(s) | 59, 1118 |
| BstMAI | GTCTC | 7 cut(s) | 112, 137, 160, 240, 461, 957, 981 |
| BstMBI | GATC | 2 cut(s) | 56, 1115 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 77, 268, 527, 532, 1211 |
| BstNI | CCWGG | 2 cut(s) | 564, 771 |
| BstNSI | RCATGY | 2 cut(s) | 872, 911 |
| BstSCI | CCNGG | 2 cut(s) | 562, 769 |
| BstSFI | CTRYAG | 3 cut(s) | 66, 672, 720 |
| BstUI | CGCG | 1 cut(s) | 846 |
| BstV1I | GCAGC | 6 cut(s) | 64, 292, 325, 430, 658, 865 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 848 |
| BsuRI | GGCC | 3 cut(s) | 87, 986, 1211 |
| BtsCI | GGATG | 5 cut(s) | 619, 837, 838, 1152, 1181 |
| BtsIMutI | CAGTG | 3 cut(s) | 286, 341, 419 |
| Cac8I | GCNNGC | 2 cut(s) | 417, 528 |
| CaiI | CAGNNNCTG | 1 cut(s) | 74 |
| CfoI | GCGC | 1 cut(s) | 846 |
| CsiI | ACCWGGT | 1 cut(s) | 769 |
| Csp6I | GTAC | 1 cut(s) | 966 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 852, 887 |
| CviAII | CATG | 4 cut(s) | 731, 755, 869, 908 |
| CviQI | GTAC | 1 cut(s) | 966 |
| DdeI | CTNAG | 9 cut(s) | 206, 266, 405, 426, 698, 954, 978, 1104, 1206 |
| DpnI | GATC | 2 cut(s) | 58, 1117 |
| DpnII | GATC | 2 cut(s) | 56, 1115 |
| DraIII | CACNNNGTG | 1 cut(s) | 734 |
| EaeI | YGGCCR | 2 cut(s) | 85, 984 |
| Eam1104I | CTCTTC | 1 cut(s) | 355 |
| EarI | CTCTTC | 1 cut(s) | 355 |
| Eco130I | CCWWGG | 1 cut(s) | 31 |
| Eco31I | GGTCTC | 1 cut(s) | 137 |
| Eco57I | CTGAAG | 1 cut(s) | 365 |
| EcoRII | CCWGG | 2 cut(s) | 562, 769 |
| EcoT14I | CCWWGG | 1 cut(s) | 31 |
| EcoT22I | ATGCAT | 2 cut(s) | 870, 925 |
| ErhI | CCWWGG | 1 cut(s) | 31 |
| Esp3I | CGTCTC | 1 cut(s) | 240 |
| FaeI | CATG | 4 cut(s) | 734, 758, 872, 911 |
| FaiI | YATR | 8 cut(s) | 54, 257, 732, 756, 870, 909, 989, 1043 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 385, 417, 1023, 1055 |
| FaqI | GGGAC | 1 cut(s) | 747 |
| FatI | CATG | 4 cut(s) | 730, 754, 868, 907 |
| Fnu4HI | GCNGC | 7 cut(s) | 78, 306, 339, 444, 672, 879, 1212 |
| FokI | GGATG | 5 cut(s) | 606, 824, 845, 1159, 1168 |
| Fsp4HI | GCNGC | 7 cut(s) | 78, 306, 339, 444, 672, 879, 1212 |
| FspBI | CTAG | 1 cut(s) | 483 |
| GlaI | GCGC | 1 cut(s) | 845 |
| GluI | GCNGC | 7 cut(s) | 78, 306, 339, 444, 672, 879, 1212 |
| HaeIII | GGCC | 3 cut(s) | 87, 986, 1211 |
| HhaI | GCGC | 1 cut(s) | 846 |
| Hin1II | CATG | 4 cut(s) | 734, 758, 872, 911 |
| Hin6I | GCGC | 1 cut(s) | 844 |
| HinP1I | GCGC | 1 cut(s) | 844 |
| HincII | GTYRAC | 1 cut(s) | 63 |
| HindII | GTYRAC | 1 cut(s) | 63 |
| HindIII | AAGCTT | 1 cut(s) | 528 |
| HinfI | GANTC | 3 cut(s) | 157, 250, 1067 |
| HphI | GGTGA | 1 cut(s) | 1110 |
| Hpy166II | GTNNAC | 2 cut(s) | 63, 1063 |
| Hpy188I | TCNGA | 8 cut(s) | 406, 429, 586, 651, 856, 919, 981, 1195 |
| Hpy188III | TCNNGA | 5 cut(s) | 239, 393, 614, 803, 1144 |
| Hpy8I | GTNNAC | 2 cut(s) | 63, 1063 |
| Hpy99I | CGWCG | 1 cut(s) | 235 |
| HpyAV | CCTTC | 5 cut(s) | 340, 361, 536, 696, 998 |
| HpyCH4III | ACNGT | 3 cut(s) | 45, 464, 646 |
| HpyCH4IV | ACGT | 2 cut(s) | 212, 746 |
| HpyCH4V | TGCA | 9 cut(s) | 20, 321, 341, 419, 674, 758, 868, 881, 923 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 77, 268, 527, 532, 1211 |
| HpyF3I | CTNAG | 9 cut(s) | 206, 266, 405, 426, 698, 954, 978, 1104, 1206 |
| HpySE526I | ACGT | 2 cut(s) | 212, 746 |
| Hsp92II | CATG | 4 cut(s) | 734, 758, 872, 911 |
| HspAI | GCGC | 1 cut(s) | 844 |
| Kzo9I | GATC | 2 cut(s) | 56, 1115 |
| LmnI | GCTCC | 3 cut(s) | 224, 289, 1045 |
| Lsp1109I | GCAGC | 6 cut(s) | 64, 292, 325, 430, 658, 865 |
| LweI | GCATC | 7 cut(s) | 236, 386, 518, 705, 823, 910, 1190 |
| MabI | ACCWGGT | 1 cut(s) | 769 |
| MaeI | CTAG | 1 cut(s) | 483 |
| MaeII | ACGT | 2 cut(s) | 212, 746 |
| MaeIII | GTNAC | 1 cut(s) | 136 |
| MalI | GATC | 2 cut(s) | 58, 1117 |
| MboI | GATC | 2 cut(s) | 56, 1115 |
| MboII | GAAGA | 6 cut(s) | 120, 194, 372, 540, 906, 1138 |
| MfeI | CAATTG | 1 cut(s) | 322 |
| MhlI | GDGCHC | 2 cut(s) | 286, 826 |
| MlsI | TGGCCA | 1 cut(s) | 986 |
| MluCI | AATT | 8 cut(s) | 322, 350, 627, 792, 857, 942, 1164, 1198 |
| MluNI | TGGCCA | 1 cut(s) | 986 |
| MlyI | GAGTC | 1 cut(s) | 259 |
| MmeI | TCCRAC | 2 cut(s) | 810, 1135 |
| Mox20I | TGGCCA | 1 cut(s) | 986 |
| Mph1103I | ATGCAT | 2 cut(s) | 870, 925 |
| MroXI | GAANNNNTTC | 4 cut(s) | 400, 495, 1035, 1164 |
| MscI | TGGCCA | 1 cut(s) | 986 |
| MseI | TTAA | 4 cut(s) | 353, 608, 693, 896 |
| Msp20I | TGGCCA | 1 cut(s) | 986 |
| MspR9I | CCNGG | 2 cut(s) | 564, 771 |
| MunI | CAATTG | 1 cut(s) | 322 |
| Mva1269I | GAATGC | 1 cut(s) | 658 |
| MvaI | CCWGG | 2 cut(s) | 564, 771 |
| MvnI | CGCG | 1 cut(s) | 846 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 77, 268, 527, 532, 1211 |
| NdeII | GATC | 2 cut(s) | 56, 1115 |
| NlaIII | CATG | 4 cut(s) | 734, 758, 872, 911 |
| NlaIV | GGNNCC | 1 cut(s) | 561 |
| NmeAIII | GCCGAG | 1 cut(s) | 113 |
| NmuCI | GTSAC | 1 cut(s) | 136 |
| NsiI | ATGCAT | 2 cut(s) | 870, 925 |
| NspI | RCATGY | 2 cut(s) | 872, 911 |
| PciI | ACATGT | 1 cut(s) | 907 |
| PctI | GAATGC | 1 cut(s) | 658 |
| PdmI | GAANNNNTTC | 4 cut(s) | 400, 495, 1035, 1164 |
| PfeI | GAWTC | 2 cut(s) | 157, 1067 |
| PkrI | GCNGC | 7 cut(s) | 79, 307, 340, 445, 673, 880, 1213 |
| PleI | GAGTC | 1 cut(s) | 258 |
| PpsI | GAGTC | 1 cut(s) | 258 |
| Ppu21I | YACGTR | 1 cut(s) | 747 |
| PscI | ACATGT | 1 cut(s) | 907 |
| PsiI | TTATAA | 1 cut(s) | 257 |
| Psp6I | CCWGG | 2 cut(s) | 562, 769 |
| PspGI | CCWGG | 2 cut(s) | 562, 769 |
| PspN4I | GGNNCC | 1 cut(s) | 561 |
| PstI | CTGCAG | 1 cut(s) | 676 |
| PstNI | CAGNNNCTG | 1 cut(s) | 74 |
| RsaI | GTAC | 1 cut(s) | 967 |
| RsaNI | GTAC | 1 cut(s) | 966 |
| SaqAI | TTAA | 4 cut(s) | 353, 608, 693, 896 |
| SatI | GCNGC | 7 cut(s) | 78, 306, 339, 444, 672, 879, 1212 |
| Sau3AI | GATC | 2 cut(s) | 56, 1115 |
| SchI | GAGTC | 1 cut(s) | 259 |
| ScrFI | CCNGG | 2 cut(s) | 564, 771 |
| SduI | GDGCHC | 2 cut(s) | 286, 826 |
| SexAI | ACCWGGT | 1 cut(s) | 769 |
| SfaNI | GCATC | 7 cut(s) | 236, 386, 518, 705, 823, 910, 1190 |
| SfcI | CTRYAG | 3 cut(s) | 66, 672, 720 |
| SmlI | CTYRAG | 2 cut(s) | 132, 947 |
| SmoI | CTYRAG | 2 cut(s) | 132, 947 |
| Sse9I | AATT | 8 cut(s) | 322, 350, 627, 792, 857, 942, 1164, 1198 |
| SsiI | CCGC | 1 cut(s) | 1212 |
| SspI | AATATT | 2 cut(s) | 691, 1022 |
| SspMI | CTAG | 1 cut(s) | 483 |
| StyD4I | CCNGG | 2 cut(s) | 562, 769 |
| StyI | CCWWGG | 1 cut(s) | 31 |
| TaaI | ACNGT | 3 cut(s) | 45, 464, 646 |
| TaiI | ACGT | 2 cut(s) | 215, 749 |
| TaqI | TCGA | 4 cut(s) | 155, 333, 453, 804 |
| TasI | AATT | 8 cut(s) | 322, 350, 627, 792, 857, 942, 1164, 1198 |
| TauI | GCSGC | 1 cut(s) | 1214 |
| TfiI | GAWTC | 2 cut(s) | 157, 1067 |
| Tru1I | TTAA | 4 cut(s) | 353, 608, 693, 896 |
| Tru9I | TTAA | 4 cut(s) | 353, 608, 693, 896 |
| TscAI | CASTG | 3 cut(s) | 286, 348, 426 |
| TseFI | GTSAC | 1 cut(s) | 136 |
| TseI | GCWGC | 6 cut(s) | 77, 305, 338, 443, 671, 878 |
| Tsp45I | GTSAC | 1 cut(s) | 136 |
| TspDTI | ATGAA | 1 cut(s) | 504 |
| TspGWI | ACGGA | 1 cut(s) | 677 |
| TspRI | CASTG | 3 cut(s) | 286, 348, 426 |
| XapI | RAATTY | 3 cut(s) | 792, 942, 1198 |
| XceI | RCATGY | 2 cut(s) | 872, 911 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 664 |
| XmnI | GAANNNNTTC | 4 cut(s) | 400, 495, 1035, 1164 |
| XspI | CTAG | 1 cut(s) | 483 |
| Zsp2I | ATGCAT | 2 cut(s) | 870, 925 |