RchiOBHm_Chr7g0240571

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000129
Physical Location & Seq
Forward (+)
66539120 .. 66540884
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21560

Sequence Viewer

Length: 1083 bp
ATGGGACAAACAGTCCTTCCAGTGTTCTACCATGTTGATCCGTCTGATGTACGAAGACAAACTGGGGAGCACTTTGGGAAAGCATTTCAGGAGCATCAAGAGCGGTTTGGAGGCAATCCTGACAAATTGCAGAGGTGGAAAGACTCTCTTGCTGAAATAGGCAATCTCTCTGGATGGCATCTGAAAGATGGGTACGAATCCAAATTCATTCAAGAAATTGTTGAAAAGATTTTCACCGAGTTAAATCAAATAATCCCAATATATGAGGGTTTAGTTGGGATGGATTCTCACCTGAATGAAATGCTTTCGTACTTAGACATTGGGTGTCCTGATGTTCGTATCATAGGGATTTGTGGTATGGGAGGTATCGGTAAGACAACTATTGCACAAGTGGTTTTTGAAAGGGTACAGGCTCAGTTTGAAGGTTGTAGCTTTCTTGAGAATGTTCGAGAGGTAACTGAGAAGCAAGGTGCAGTCCATTTACAAAAGCAACTTCTTTCGGATTTGCTGGAATGTAGTGTAAATGTACAGAACACTAAAAAGGGAAAAAGTATAATGAGGGAGAGACTACGTACTAAAATGGTTCTTATCATTCTTGATGATGTGGACCAAGAAAAACAATTGGAAGCATTGTGTGATAGGGAATCGTTTGGTCCAGGGAGTAGAATCATCATAACTACTAGAGATAAACATTTGCTCGTTGAAGGAGATAAAGTATATACGGTGAATCGATTAACTGATGATGAAGCTCTCGAGCTCTTCCGTATGAAAGCCTTTAAGAAAGATCAGCTGGTTAGGGAAGATTTTCTCGAGCTATCCGAGGAATTTTTGAAATATGCTAATGGCCTTCCATTAGCTATTAAAGTTTTGGGTTCCTCTATTCGTGGTAGAAGTGTAAAATTATGGTCTAGTGCATTGAAGAGACTTGAAAAAAATCCTCCAAAAGGGATTATTGATGTTCTTAAAGTTAGTTTTGATGGATTAGAAAAATCCGAAAAAAAAATATTTTTGGACATCGCATGTTTCTTTAAAGGAGGGTACATAGATCATGTAACAAGAATACTACATGGTAGTGACTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

360

Amino Acids

40.91

Weight (kDa)

6.19

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 87 1.1e-16 TIR domain
NB-ARC PF00931 98 - 262 6e-25 NB-ARC domain
NACHT PF05729 115 - 255 5.1e-07 NACHT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 103
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 2 cut(s) 203, 824
AfaI GTAC 7 cut(s) 51, 194, 311, 408, 528, 574, 1040
AfiI CCNNNNNNNGG 1 cut(s) 944
AgsI TTSAA 8 cut(s) 212, 224, 401, 422, 704, 832, 919, 929
AhdI GACNNNNNGTC 1 cut(s) 11
AjnI CCWGG 1 cut(s) 655
AluBI AGCT 6 cut(s) 432, 749, 757, 790, 814, 857
AluI AGCT 6 cut(s) 432, 749, 757, 790, 814, 857
Alw21I GWGCWC 2 cut(s) 72, 759
Alw26I GTCTC 2 cut(s) 559, 916
AlwI GGATC 1 cut(s) 32
Ama87I CYCGRG 2 cut(s) 752, 809
AoxI GGCC 1 cut(s) 844
ApoI RAATTY 2 cut(s) 203, 824
Asp700I GAANNNNTTC 1 cut(s) 804
AspS9I GGNCC 2 cut(s) 607, 653
AsuHPI GGTGA 3 cut(s) 226, 281, 736
AvaI CYCGRG 2 cut(s) 752, 809
AvaII GGWCC 2 cut(s) 607, 653
BanII GRGCYC 1 cut(s) 759
BbsI GAAGAC 1 cut(s) 61
Bbv12I GWGCWC 2 cut(s) 72, 759
BccI CCATC 4 cut(s) 168, 182, 274, 971
BciT130I CCWGG 1 cut(s) 657
BcoDI GTCTC 2 cut(s) 559, 916
BfaI CTAG 2 cut(s) 681, 909
Bme1390I CCNGG 1 cut(s) 657
Bme18I GGWCC 2 cut(s) 607, 653
BmeRI GACNNNNNGTC 1 cut(s) 11
BmeT110I CYCGRG 2 cut(s) 752, 809
BmgT120I GGNCC 2 cut(s) 607, 653
BmiI GGNNCC 1 cut(s) 874
BmrFI CCNGG 1 cut(s) 657
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 103, 187
BmuI ACTGGG 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 458
Bsa29I ATCGAT 1 cut(s) 730
BsaAI YACGTR 1 cut(s) 572
BsaJI CCNNGG 2 cut(s) 656, 819
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 1 cut(s) 944
Bse1I ACTGG 2 cut(s) 20, 67
BseBI CCWGG 1 cut(s) 657
BseCI ATCGAT 1 cut(s) 730
BseDI CCNNGG 2 cut(s) 656, 819
BseGI GGATG 2 cut(s) 179, 285
BseLI CCNNNNNNNGG 1 cut(s) 944
BseMII CTCAG 2 cut(s) 428, 450
BseNI ACTGG 2 cut(s) 20, 67
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 1 cut(s) 846
BshVI ATCGAT 1 cut(s) 730
BsiHKAI GWGCWC 2 cut(s) 72, 759
BsiHKCI CYCGRG 2 cut(s) 752, 809
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 944
BsmAI GTCTC 2 cut(s) 559, 916
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 846
BsoBI CYCGRG 2 cut(s) 752, 809
Bsp1286I GDGCHC 2 cut(s) 72, 759
Bsp1407I TGTACA 1 cut(s) 526
Bsp143I GATC 3 cut(s) 37, 784, 1045
BspACI CCGC 1 cut(s) 103
BspANI GGCC 1 cut(s) 846
BspCNI CTCAG 2 cut(s) 427, 451
BspDI ATCGAT 1 cut(s) 730
BspLI GGNNCC 1 cut(s) 874
BspPI GGATC 1 cut(s) 32
BspQI GCTCTTC 1 cut(s) 764
BsrBI CCGCTC 1 cut(s) 103
BsrGI TGTACA 1 cut(s) 526
BsrI ACTGG 2 cut(s) 20, 67
BssECI CCNNGG 2 cut(s) 656, 819
BssMI GATC 3 cut(s) 37, 784, 1045
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 3 cut(s) 13, 724, 1079
Bst6I CTCTTC 2 cut(s) 764, 914
BstAUI TGTACA 1 cut(s) 526
BstBAI YACGTR 1 cut(s) 572
BstDEI CTNAG 3 cut(s) 313, 414, 459
BstENI CCTNNNNNAGG 1 cut(s) 942
BstF5I GGATG 2 cut(s) 179, 285
BstKTI GATC 3 cut(s) 40, 787, 1048
BstMAI GTCTC 2 cut(s) 559, 916
BstMBI GATC 3 cut(s) 37, 784, 1045
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 657
BstNSI RCATGY 1 cut(s) 1023
BstSCI CCNGG 1 cut(s) 655
BstSNI TACGTA 1 cut(s) 572
BstV2I GAAGAC 1 cut(s) 61
Bsu15I ATCGAT 1 cut(s) 730
BsuRI GGCC 1 cut(s) 846
BsuTUI ATCGAT 1 cut(s) 730
BtgZI GCGATG 1 cut(s) 1000
BtsCI GGATG 2 cut(s) 179, 285
BtsIMutI CAGTG 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 607, 653
ClaI ATCGAT 1 cut(s) 730
Csp6I GTAC 7 cut(s) 50, 193, 310, 407, 527, 573, 1039
CviAII CATG 4 cut(s) 32, 1020, 1049, 1067
CviJI RGCY 9 cut(s) 413, 432, 749, 757, 773, 790, 814, 846, 857
CviKI_1 RGCY 9 cut(s) 413, 432, 749, 757, 773, 790, 814, 846, 857
CviQI GTAC 7 cut(s) 50, 193, 310, 407, 527, 573, 1039
DdeI CTNAG 3 cut(s) 313, 414, 459
DpnI GATC 3 cut(s) 39, 786, 1047
DpnII GATC 3 cut(s) 37, 784, 1045
DraI TTTAAA 1 cut(s) 1030
DriI GACNNNNNGTC 1 cut(s) 11
Eam1104I CTCTTC 2 cut(s) 764, 914
Eam1105I GACNNNNNGTC 1 cut(s) 11
EarI CTCTTC 2 cut(s) 764, 914
Ecl136II GAGCTC 1 cut(s) 757
Eco105I TACGTA 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 759
Eco47I GGWCC 2 cut(s) 607, 653
Eco53kI GAGCTC 1 cut(s) 757
Eco88I CYCGRG 2 cut(s) 752, 809
EcoICRI GAGCTC 1 cut(s) 757
EcoNI CCTNNNNNAGG 1 cut(s) 942
EcoRII CCWGG 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 759
FaeI CATG 4 cut(s) 35, 1023, 1052, 1070
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 1 cut(s) 18
FatI CATG 4 cut(s) 31, 1019, 1048, 1066
FokI GGATG 2 cut(s) 186, 292
FriOI GRGCYC 1 cut(s) 759
FspBI CTAG 2 cut(s) 681, 909
HaeIII GGCC 1 cut(s) 846
Hin1II CATG 4 cut(s) 35, 1023, 1052, 1070
HinfI GANTC 6 cut(s) 143, 197, 284, 644, 666, 727
HphI GGTGA 3 cut(s) 226, 281, 736
Hpy166II GTNNAC 1 cut(s) 607
Hpy188I TCNGA 5 cut(s) 46, 183, 502, 820, 994
Hpy8I GTNNAC 1 cut(s) 607
HpyAV CCTTC 4 cut(s) 26, 416, 698, 857
HpyCH4III ACNGT 3 cut(s) 13, 724, 1079
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 4 cut(s) 130, 386, 473, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 3 cut(s) 313, 414, 459
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 4 cut(s) 35, 1023, 1052, 1070
Kzo9I GATC 3 cut(s) 37, 784, 1045
LguI GCTCTTC 1 cut(s) 764
LmnI GCTCC 2 cut(s) 67, 91
LweI GCATC 2 cut(s) 103, 187
MaeI CTAG 2 cut(s) 681, 909
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 3 cut(s) 454, 1051, 1073
MalI GATC 3 cut(s) 39, 786, 1047
MbiI CCGCTC 1 cut(s) 103
MboI GATC 3 cut(s) 37, 784, 1045
MboII GAAGA 4 cut(s) 66, 751, 812, 931
MfeI CAATTG 1 cut(s) 620
MhlI GDGCHC 2 cut(s) 72, 759
MluCI AATT 6 cut(s) 125, 203, 216, 620, 824, 899
MlyI GAGTC 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 804
MseI TTAA 6 cut(s) 242, 734, 777, 861, 963, 1029
MslI CAYNNNNRTG 2 cut(s) 294, 1071
MspA1I CMGCKG 1 cut(s) 790
MspR9I CCNGG 1 cut(s) 657
MunI CAATTG 1 cut(s) 620
MvaI CCWGG 1 cut(s) 657
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 3 cut(s) 37, 784, 1045
NlaIII CATG 4 cut(s) 35, 1023, 1052, 1070
NlaIV GGNNCC 1 cut(s) 874
NmuCI GTSAC 1 cut(s) 1073
NspI RCATGY 1 cut(s) 1023
PaeR7I CTCGAG 2 cut(s) 752, 809
PciSI GCTCTTC 1 cut(s) 764
PcsI WCGNNNNNNNCGW 1 cut(s) 816
PdmI GAANNNNTTC 1 cut(s) 804
PfeI GAWTC 5 cut(s) 197, 284, 644, 666, 727
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Ppu21I YACGTR 1 cut(s) 572
Psp124BI GAGCTC 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 655
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 1 cut(s) 874
PspPI GGNCC 2 cut(s) 607, 653
PvuII CAGCTG 1 cut(s) 790
RsaI GTAC 7 cut(s) 51, 194, 311, 408, 528, 574, 1040
RsaNI GTAC 7 cut(s) 50, 193, 310, 407, 527, 573, 1039
RseI CAYNNNNRTG 2 cut(s) 294, 1071
SacI GAGCTC 1 cut(s) 759
SapI GCTCTTC 1 cut(s) 764
SaqAI TTAA 6 cut(s) 242, 734, 777, 861, 963, 1029
Sau3AI GATC 3 cut(s) 37, 784, 1045
Sau96I GGNCC 2 cut(s) 607, 653
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 657
SduI GDGCHC 2 cut(s) 72, 759
SfaNI GCATC 2 cut(s) 103, 187
Sfr274I CTCGAG 2 cut(s) 752, 809
SinI GGWCC 2 cut(s) 607, 653
SlaI CTCGAG 2 cut(s) 752, 809
SmiMI CAYNNNNRTG 2 cut(s) 294, 1071
SmlI CTYRAG 3 cut(s) 437, 752, 809
SmoI CTYRAG 3 cut(s) 437, 752, 809
SnaBI TACGTA 1 cut(s) 572
Sse9I AATT 6 cut(s) 125, 203, 216, 620, 824, 899
SsiI CCGC 1 cut(s) 103
SspI AATATT 1 cut(s) 1005
SspMI CTAG 2 cut(s) 681, 909
SstI GAGCTC 1 cut(s) 759
StyD4I CCNGG 1 cut(s) 655
TaaI ACNGT 3 cut(s) 13, 724, 1079
TaiI ACGT 1 cut(s) 574
TaqI TCGA 4 cut(s) 448, 730, 753, 810
TasI AATT 6 cut(s) 125, 203, 216, 620, 824, 899
TatI WGTACW 1 cut(s) 526
TfiI GAWTC 5 cut(s) 197, 284, 644, 666, 727
Tru1I TTAA 6 cut(s) 242, 734, 777, 861, 963, 1029
Tru9I TTAA 6 cut(s) 242, 734, 777, 861, 963, 1029
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 1073
Tsp45I GTSAC 1 cut(s) 1073
TspDTI ATGAA 4 cut(s) 196, 312, 759, 782
TspGWI ACGGA 2 cut(s) 30, 752
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 2 cut(s) 607, 653
XagI CCTNNNNNAGG 1 cut(s) 942
XapI RAATTY 2 cut(s) 203, 824
XceI RCATGY 1 cut(s) 1023
XhoI CTCGAG 2 cut(s) 752, 809
XmnI GAANNNNTTC 1 cut(s) 804
XspI CTAG 2 cut(s) 681, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.