Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001470.1

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Forward (+)

24898 .. 27070

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001470.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggaatcgccgccggacaaattcatggccgatggctcggagtcgaggaagccaaggctgttcatcagggaaatgattatgagtaacttcaagtcttacgccggtgaacaacgcgttggtcctttccacaagagcttttctgctgttgttggacctaatgggagtgggaagagcaacgtcatagatgcaatgctctttgtattcggaaaacgagctaagcagatgcgacttaacagagtttcggagctcattcataactccactaattgccacaatatggatagtgctcgagtttctcttcatttccaggagatcattgatttggacgatgggacgtttgaagctgttccaggaagtgattttgtaatcactagggtagcgtatcgggataactcctccaggtattacatcaatgaccgttcaagcaattttactcaagttaccaagaaactgaaagggaaaggagttgacctggacaacaatcgcttcttgattcttcagggtgaagttgagcagatctcactcatgaagccaaaagctcaaggatctcaggatgaaagcctcctcgagtaccttgaggacattattgggaccagcaaatatgtcgaaaaaattgatgaatcttataaagagtatgctctagatgggaagaatgaagcggaagcttacatgctgaaagagttgtcccttctaaattggcaagagaaagccacacaattggcttatgaagatacctttgcaaaaatgcttgatctgcaggaaactataaccagcttagaagaaaatctgaacaatgatagggagaagatccaggagcgtcataatgcagtgaaggagcttgaatctgtgtacaataaacatatgaaacaacaagaggtttgggtttcatggatatgcttttgtagaaaccaatgttttaaaacgctaaaggcgtacccgaggcgttttcgggggagccttgcagccttgaggcataaggcgcataaggcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

330

Amino Acids

38.06

Weight (kDa)

7.66

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccII	CGCG	1 cut(s)	114
AciI	CCGC	2 cut(s)	11, 659
AclWI	GGATC	2 cut(s)	553, 802
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	482
AfaI	GTAC	3 cut(s)	572, 851, 935
AfiI	CCNNNNNNNGG	1 cut(s)	277
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	91, 341, 423, 842
AjnI	CCWGG	5 cut(s)	306, 349, 398, 471, 810
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	8 cut(s)	135, 215, 247, 344, 539, 665, 774, 838
AluI	AGCT	8 cut(s)	135, 215, 247, 344, 539, 665, 774, 838
Alw21I	GWGCWC	2 cut(s)	249, 289
AlwI	GGATC	2 cut(s)	553, 802
Ama87I	CYCGRG	3 cut(s)	288, 566, 937
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	962
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	982
AspS9I	GGNCC	3 cut(s)	119, 152, 591
AsuHPI	GGTGA	2 cut(s)	116, 515
AvaI	CYCGRG	3 cut(s)	288, 566, 937
AvaII	GGWCC	3 cut(s)	119, 152, 591
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	249, 289
BbvI	GCAGC	1 cut(s)	974
BccI	CCATC	3 cut(s)	26, 323, 638
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BciT130I	CCWGG	5 cut(s)	308, 351, 400, 473, 812
BfaI	CTAG	2 cut(s)	372, 641
BfmI	CTRYAG	1 cut(s)	755
BglII	AGATCT	1 cut(s)	516
BisI	GCNGC	2 cut(s)	11, 963
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	2 cut(s)	12, 964
Bme1390I	CCNGG	5 cut(s)	308, 351, 400, 473, 812
Bme18I	GGWCC	3 cut(s)	119, 152, 591
BmeT110I	CYCGRG	3 cut(s)	288, 566, 937
BmgT120I	GGNCC	3 cut(s)	119, 152, 591
BmiI	GGNNCC	2 cut(s)	592, 956
BmrFI	CCNGG	5 cut(s)	308, 351, 400, 473, 812
BmsI	GCATC	2 cut(s)	175, 213
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	1 cut(s)	382
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	4 cut(s)	420, 525, 596, 988
BsaJI	CCNNGG	2 cut(s)	53, 938
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	5 cut(s)	308, 351, 400, 473, 812
BseDI	CCNNGG	2 cut(s)	53, 938
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	563
BseRI	GAGGAG	2 cut(s)	385, 554
BseXI	GCAGC	1 cut(s)	974
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	2 cut(s)	249, 289
BsiHKCI	CYCGRG	3 cut(s)	288, 566, 937
BsiSI	CCGG	2 cut(s)	14, 102
BslFI	GGGAC	3 cut(s)	346, 604, 670
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmFI	GGGAC	3 cut(s)	346, 604, 670
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	3 cut(s)	288, 566, 937
Bsp1286I	GDGCHC	2 cut(s)	249, 289
Bsp1407I	TGTACA	1 cut(s)	849
Bsp143I	GATC	5 cut(s)	312, 516, 545, 751, 807
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	2 cut(s)	11, 659
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	562
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	525
BspLI	GGNNCC	2 cut(s)	592, 956
BspMAI	CTGCAG	1 cut(s)	759
BspPI	GGATC	2 cut(s)	553, 802
BspQI	GCTCTTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	101
BsrGI	TGTACA	1 cut(s)	849
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	53, 938
BssMI	GATC	5 cut(s)	312, 516, 545, 751, 807
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	5 cut(s)	308, 351, 400, 473, 812
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	2 cut(s)	164, 303
BstAUI	TGTACA	1 cut(s)	849
BstDEI	CTNAG	3 cut(s)	216, 549, 775
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	982
BstKTI	GATC	5 cut(s)	315, 519, 548, 754, 810
BstMBI	GATC	5 cut(s)	312, 516, 545, 751, 807
BstMWI	GCNNNNNNNGC	3 cut(s)	754, 979, 986
BstNI	CCWGG	5 cut(s)	308, 351, 400, 473, 812
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	5 cut(s)	306, 349, 398, 471, 810
BstSFI	CTRYAG	1 cut(s)	755
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	974
BstX2I	RGATCY	3 cut(s)	516, 545, 807
BstXI	CCANNNNNNTGG	1 cut(s)	718
BstYI	RGATCY	3 cut(s)	516, 545, 807
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	1 cut(s)	834
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	1 cut(s)	982
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	119, 152, 591
CseI	GACGC	1 cut(s)	806
Csp6I	GTAC	3 cut(s)	571, 850, 934
CviAII	CATG	4 cut(s)	25, 526, 670, 888
CviQI	GTAC	3 cut(s)	571, 850, 934
DdeI	CTNAG	3 cut(s)	216, 549, 775
DpnI	GATC	5 cut(s)	314, 518, 547, 753, 809
DpnII	GATC	5 cut(s)	312, 516, 545, 751, 807
DraI	TTTAAA	1 cut(s)	919
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	164, 303
EarI	CTCTTC	2 cut(s)	164, 303
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	3 cut(s)	119, 152, 591
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	482
Eco88I	CYCGRG	3 cut(s)	288, 566, 937
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	5 cut(s)	306, 349, 398, 471, 810
EcoT14I	CCWWGG	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	4 cut(s)	28, 529, 673, 891
FaqI	GGGAC	3 cut(s)	346, 604, 670
FatI	CATG	4 cut(s)	24, 525, 669, 887
FauNDI	CATATG	1 cut(s)	861
Fnu4HI	GCNGC	2 cut(s)	11, 963
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	11, 963
FspBI	CTAG	2 cut(s)	372, 641
GlaI	GCGC	1 cut(s)	981
GluI	GCNGC	2 cut(s)	11, 963
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	14, 102
HgaI	GACGC	1 cut(s)	806
HhaI	GCGC	1 cut(s)	982
Hin1II	CATG	4 cut(s)	28, 529, 673, 891
Hin6I	GCGC	1 cut(s)	980
HinP1I	GCGC	1 cut(s)	980
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	663
HinfI	GANTC	5 cut(s)	5, 41, 493, 620, 842
HpaII	CCGG	2 cut(s)	14, 102
HphI	GGTGA	2 cut(s)	116, 515
Hpy166II	GTNNAC	3 cut(s)	107, 469, 850
Hpy188I	TCNGA	4 cut(s)	40, 206, 244, 789
Hpy188III	TCNNGA	5 cut(s)	386, 490, 526, 551, 641
Hpy8I	GTNNAC	3 cut(s)	107, 469, 850
HpyAV	CCTTC	2 cut(s)	698, 826
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	2 cut(s)	177, 335
HpyCH4V	TGCA	5 cut(s)	188, 740, 757, 827, 962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	754, 979, 986
HpyF3I	CTNAG	3 cut(s)	216, 549, 775
HpySE526I	ACGT	2 cut(s)	177, 335
Hsp92II	CATG	4 cut(s)	28, 529, 673, 891
HspAI	GCGC	1 cut(s)	980
Kzo9I	GATC	5 cut(s)	312, 516, 545, 751, 807
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	4 cut(s)	244, 814, 835, 954
Lsp1109I	GCAGC	1 cut(s)	974
LweI	GCATC	2 cut(s)	175, 213
MaeI	CTAG	2 cut(s)	372, 641
MaeII	ACGT	2 cut(s)	177, 335
MaeIII	GTNAC	2 cut(s)	83, 439
MalI	GATC	5 cut(s)	314, 518, 547, 753, 809
MboI	GATC	5 cut(s)	312, 516, 545, 751, 807
MboII	GAAGA	7 cut(s)	181, 290, 488, 661, 740, 791, 817
MfeI	CAATTG	1 cut(s)	716
MflI	RGATCY	3 cut(s)	516, 545, 807
MhlI	GDGCHC	2 cut(s)	249, 289
MluCI	AATT	6 cut(s)	20, 265, 427, 612, 694, 716
MluI	ACGCGT	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	8 cut(s)	39, 406, 571, 572, 575, 868, 933, 963
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	2 cut(s)	231, 918
MslI	CAYNNNNRTG	1 cut(s)	892
MspI	CCGG	2 cut(s)	14, 102
MspR9I	CCNGG	5 cut(s)	308, 351, 400, 473, 812
MunI	CAATTG	1 cut(s)	716
MvaI	CCWGG	5 cut(s)	308, 351, 400, 473, 812
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	754, 979, 986
NdeI	CATATG	1 cut(s)	861
NdeII	GATC	5 cut(s)	312, 516, 545, 751, 807
NlaIII	CATG	4 cut(s)	28, 529, 673, 891
NlaIV	GGNNCC	2 cut(s)	592, 956
NspI	RCATGY	1 cut(s)	673
PaeR7I	CTCGAG	2 cut(s)	288, 566
PagI	TCATGA	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	929
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	4 cut(s)	5, 493, 620, 842
PflMI	CCANNNNNTGG	1 cut(s)	277
PfoI	TCCNGGA	3 cut(s)	306, 349, 810
PkrI	GCNGC	2 cut(s)	12, 964
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PsiI	TTATAA	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	5 cut(s)	306, 349, 398, 471, 810
PspGI	CCWGG	5 cut(s)	306, 349, 398, 471, 810
PspN4I	GGNNCC	2 cut(s)	592, 956
PspPI	GGNCC	3 cut(s)	119, 152, 591
PspXI	VCTCGAGB	2 cut(s)	288, 566
PstI	CTGCAG	1 cut(s)	759
PsuI	RGATCY	3 cut(s)	516, 545, 807
RsaI	GTAC	3 cut(s)	572, 851, 935
RsaNI	GTAC	3 cut(s)	571, 850, 934
RseI	CAYNNNNRTG	1 cut(s)	892
SacI	GAGCTC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	231, 918
SatI	GCNGC	2 cut(s)	11, 963
Sau3AI	GATC	5 cut(s)	312, 516, 545, 751, 807
Sau96I	GGNCC	3 cut(s)	119, 152, 591
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	5 cut(s)	308, 351, 400, 473, 812
SduI	GDGCHC	2 cut(s)	249, 289
SfaNI	GCATC	2 cut(s)	175, 213
SfcI	CTRYAG	1 cut(s)	755
Sfr274I	CTCGAG	2 cut(s)	288, 566
SgrAI	CRCCGGYG	1 cut(s)	101
SinI	GGWCC	3 cut(s)	119, 152, 591
SlaI	CTCGAG	2 cut(s)	288, 566
SmiMI	CAYNNNNRTG	1 cut(s)	892
SmlI	CTYRAG	6 cut(s)	288, 435, 540, 566, 575, 967
SmoI	CTYRAG	6 cut(s)	288, 435, 540, 566, 575, 967
Sse9I	AATT	6 cut(s)	20, 265, 427, 612, 694, 716
SsiI	CCGC	2 cut(s)	11, 659
SspMI	CTAG	2 cut(s)	372, 641
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	5 cut(s)	306, 349, 398, 471, 810
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	2 cut(s)	180, 338
TaqI	TCGA	4 cut(s)	44, 289, 567, 606
TasI	AATT	6 cut(s)	20, 265, 427, 612, 694, 716
TatI	WGTACW	1 cut(s)	849
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	4 cut(s)	5, 493, 620, 842
Tru1I	TTAA	2 cut(s)	231, 918
Tru9I	TTAA	2 cut(s)	231, 918
TscAI	CASTG	1 cut(s)	834
TseI	GCWGC	1 cut(s)	962
TspRI	CASTG	1 cut(s)	834
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	3 cut(s)	119, 152, 591
XapI	RAATTY	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	640
XceI	RCATGY	1 cut(s)	673
XhoI	CTCGAG	2 cut(s)	288, 566
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	2 cut(s)	372, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.