Rorug07G0219100

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
19678736 .. 19679194
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0219100.1

Sequence Viewer

Length: 459 bp
ATGACCCATCTCTTTAGAGATTGTCCTAAAGCTGCTGCAACCTGGAATGTTATTGGTGTTCCTATATCTATGCAAAGAACCTTTACTCTGGACTGGGAAGCCTGGATTGCTGCAAATATCCTTCGGAAAGGAAGTAAGTTTATGCATACTGACTGGTCTCATGCCTTCATCTTTACTTGTTGGTTTATATGGAAGTGGCGTAATATGAACATTTTTGATAATAATTTCCATGGTCCTTATAGTGCCAGAGAATCTATTTTACAATATTTTCTTGATTGGCACAAGAACTCTACTGCCGTTACCAGTCCTTCTAATTCTAGGATTGAGTTGTTGAGTTGGATTAAACCTAGCGTTGGGTATTATACATTGAATGTGGATGGGTCAAGGTCTAGGGATGGTGTTCTTGGCTCTGGTGGAGTAATTAGAGATAGCAATGGTCAATGGCATTATGGTTGTTGA

Protein Analysis

152

Amino Acids

17.61

Weight (kDa)

9.12

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 2 cut(s) 41, 101
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 32, 35, 110
AspS9I GGNCC 1 cut(s) 233
AvaII GGWCC 1 cut(s) 233
BbvI GCAGC 3 cut(s) 19, 22, 97
BccI CCATC 3 cut(s) 15, 371, 389
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 2 cut(s) 43, 103
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 3 cut(s) 318, 348, 390
BisI GCNGC 3 cut(s) 33, 36, 111
BlsI GCNGC 3 cut(s) 34, 37, 112
Bme1390I CCNGG 2 cut(s) 43, 103
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 2 cut(s) 43, 103
BmrI ACTGGG 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 3 cut(s) 98, 158, 303
Bse3DI GCAATG 1 cut(s) 439
BseBI CCWGG 2 cut(s) 43, 103
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 2 cut(s) 382, 400
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 439
BseNI ACTGG 3 cut(s) 98, 158, 303
BseXI GCAGC 3 cut(s) 19, 22, 97
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 229
BspTNI GGTCTC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 439
BsrI ACTGG 3 cut(s) 98, 158, 303
BssECI CCNNGG 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 229
Bst2UI CCWGG 2 cut(s) 43, 103
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 2 cut(s) 382, 400
BstMAI GTCTC 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 2 cut(s) 43, 103
BstSCI CCNGG 2 cut(s) 41, 101
BstV1I GCAGC 3 cut(s) 19, 22, 97
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 2 cut(s) 382, 400
Cfr13I GGNCC 1 cut(s) 233
CviAII CATG 2 cut(s) 161, 230
CviJI RGCY 3 cut(s) 32, 101, 408
CviKI_1 RGCY 3 cut(s) 32, 101, 408
Eco130I CCWWGG 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 41, 101
EcoT14I CCWWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 2 cut(s) 164, 233
FatI CATG 2 cut(s) 160, 229
Fnu4HI GCNGC 3 cut(s) 33, 36, 111
FokI GGATG 2 cut(s) 389, 407
Fsp4HI GCNGC 3 cut(s) 33, 36, 111
FspBI CTAG 3 cut(s) 318, 348, 390
GluI GCNGC 3 cut(s) 33, 36, 111
Hin1II CATG 2 cut(s) 164, 233
HinfI GANTC 1 cut(s) 251
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 89, 272
HpyAV CCTTC 3 cut(s) 131, 175, 318
HpyCH4V TGCA 4 cut(s) 38, 73, 113, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
Hsp92II CATG 2 cut(s) 164, 233
Lsp1109I GCAGC 3 cut(s) 19, 22, 97
MaeI CTAG 3 cut(s) 318, 348, 390
MaeIII GTNAC 1 cut(s) 298
MluCI AATT 3 cut(s) 223, 313, 420
MmeI TCCRAC 1 cut(s) 317
Mph1103I ATGCAT 1 cut(s) 147
MseI TTAA 1 cut(s) 342
MspR9I CCNGG 2 cut(s) 43, 103
MvaI CCWGG 2 cut(s) 43, 103
MwoI GCNNNNNNNGC 1 cut(s) 107
NcoI CCATGG 1 cut(s) 229
NlaIII CATG 2 cut(s) 164, 233
NsiI ATGCAT 1 cut(s) 147
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 3 cut(s) 34, 37, 112
Psp6I CCWGG 2 cut(s) 41, 101
PspGI CCWGG 2 cut(s) 41, 101
PspPI GGNCC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 33, 36, 111
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 43, 103
SetI ASST 5 cut(s) 34, 44, 83, 349, 389
SinI GGWCC 1 cut(s) 233
Sse9I AATT 3 cut(s) 223, 313, 420
SspI AATATT 1 cut(s) 266
SspMI CTAG 3 cut(s) 318, 348, 390
StyD4I CCNGG 2 cut(s) 41, 101
StyI CCWWGG 1 cut(s) 229
TasI AATT 3 cut(s) 223, 313, 420
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseI GCWGC 3 cut(s) 32, 35, 110
TspDTI ATGAA 2 cut(s) 157, 221
VpaK11BI GGWCC 1 cut(s) 233
XspI CTAG 3 cut(s) 318, 348, 390
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.