Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

36956863 .. 36958591

Gene Structure 1729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG353400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCAGGGGATACCGAAACATATATATTGCTGTGAGCTTACAACAGTTCGTTCCAGATTAGAACCTTGGGAAAAACAACTGATTGAGCACCGGAAGAAATTTGATGTTGCATATACTGAACGCAAGCTTTTGGATGAAAAGCATCAAGCTGGTCGTGCAGCTTTTGAAGACGCTCGAAAGCAGATGGATGATATATGGGGACTGATACAAACAAAAACTGCAGACATTACAAAAATTCGGAGTGAGCTAGAAAAGAACAAGTTCGAAAGGACGGAATACCGTAAAGCCGAACAGGAATACATCAAAGAACAAGAAGCTCTCATACCTTGTGAACAAGCTGCAAGACAGAAGTTGTCCAACCGGATACCGGGAATACATGGCCGACTGGGCGATTTAGGTGCTATTGATGAGCAATATGATGTTGCCATATCAACGGCTTGCCCTGGACTTGATAATATTGTGGTGGAAACAACTGATGGAGCAATAGCTTGTGTTGAGCTACTCCGAAGGGAGAATCTTGGTGTTGCTAATTTCATGATAATGGAAAAGATCACTGATCGTTTACCAGTGAGGAAGGAGAATGTAAGAACTCCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

199

Amino Acids

22.98

Weight (kDa)

6.17

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_hinge	PF06470	123 - 193	4.9e-13	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	98, 234
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	9 cut(s)	37, 127, 149, 161, 247, 317, 338, 488, 499
AluI	AGCT	9 cut(s)	37, 127, 149, 161, 247, 317, 338, 488, 499
Alw21I	GWGCWC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	158, 338
ApoI	RAATTY	2 cut(s)	98, 234
Asp700I	GAANNNNTTC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	369
AsuII	TTCGAA	1 cut(s)	264
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	170, 325
BccI	CCATC	2 cut(s)	178, 470
BceAI	ACGGC	1 cut(s)	450
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	444
BciVI	GTATCC	2 cut(s)	3, 357
BcnI	CCSGG	1 cut(s)	369
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	219
BfuI	GTATCC	2 cut(s)	3, 357
BglI	GCCNNNNNGGC	1 cut(s)	387
BisI	GCNGC	2 cut(s)	159, 339
BlsI	GCNGC	2 cut(s)	160, 340
Bme1390I	CCNGG	2 cut(s)	369, 444
BmrFI	CCNGG	2 cut(s)	369, 444
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	65, 442
BsaWI	WCCGGW	2 cut(s)	90, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	390, 566
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	65, 442
BseGI	GGATG	2 cut(s)	139, 193
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseNI	ACTGG	2 cut(s)	390, 566
BseXI	GCAGC	2 cut(s)	170, 325
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	3 cut(s)	91, 361, 368
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	381
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	549, 556
BspANI	GGCC	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	534
BspMAI	CTGCAG	1 cut(s)	223
BspT104I	TTCGAA	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	390, 566
BssECI	CCNNGG	2 cut(s)	65, 442
BssMI	GATC	2 cut(s)	549, 556
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	46, 281
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	125, 439
BstF5I	GGATG	2 cut(s)	139, 193
BstKTI	GATC	2 cut(s)	552, 559
BstMBI	GATC	2 cut(s)	549, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 387
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	2 cut(s)	367, 442
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	170, 325
BstV2I	GAAGAC	1 cut(s)	174
BsuI	GTATCC	2 cut(s)	3, 357
BsuRI	GGCC	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	139, 193
BtsIMutI	CAGTG	2 cut(s)	552, 573
Cac8I	GCNNGC	2 cut(s)	125, 439
CciI	TCATGA	1 cut(s)	534
CseI	GACGC	1 cut(s)	179
CviAII	CATG	2 cut(s)	377, 535
DpnI	GATC	2 cut(s)	551, 558
DpnII	GATC	2 cut(s)	549, 556
EaeI	YGGCCR	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	2 cut(s)	380, 538
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	2 cut(s)	376, 534
Fnu4HI	GCNGC	2 cut(s)	159, 339
FokI	GGATG	2 cut(s)	146, 200
Fsp4HI	GCNGC	2 cut(s)	159, 339
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	2 cut(s)	159, 339
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	3 cut(s)	91, 361, 368
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	380, 538
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	1 cut(s)	514
HpaII	CCGG	3 cut(s)	91, 361, 368
Hpy166II	GTNNAC	2 cut(s)	332, 563
Hpy188I	TCNGA	2 cut(s)	240, 506
Hpy188III	TCNNGA	3 cut(s)	54, 535, 593
Hpy8I	GTNNAC	2 cut(s)	332, 563
HpyAV	CCTTC	2 cut(s)	501, 568
HpyCH4III	ACNGT	2 cut(s)	46, 281
HpyCH4V	TGCA	5 cut(s)	4, 110, 158, 221, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 387
Hsp92II	CATG	2 cut(s)	380, 538
Kzo9I	GATC	2 cut(s)	549, 556
LmnI	GCTCC	1 cut(s)	479
Lsp1109I	GCAGC	2 cut(s)	170, 325
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	248
MalI	GATC	2 cut(s)	551, 558
MboI	GATC	2 cut(s)	549, 556
MboII	GAAGA	2 cut(s)	106, 179
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	3 cut(s)	98, 234, 529
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	1 cut(s)	564
MroXI	GAANNNNTTC	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	539
MspI	CCGG	3 cut(s)	91, 361, 368
MspR9I	CCNGG	2 cut(s)	369, 444
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	2 cut(s)	155, 387
NciI	CCSGG	1 cut(s)	369
NdeII	GATC	2 cut(s)	549, 556
NlaIII	CATG	2 cut(s)	380, 538
NspV	TTCGAA	1 cut(s)	264
PagI	TCATGA	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	514
PkrI	GCNGC	2 cut(s)	160, 340
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PstI	CTGCAG	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	539
SatI	GCNGC	2 cut(s)	159, 339
Sau3AI	GATC	2 cut(s)	549, 556
ScrFI	CCNGG	2 cut(s)	369, 444
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	219
SfuI	TTCGAA	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	539
Sse9I	AATT	3 cut(s)	98, 234, 529
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	367, 442
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	46, 281
TaqI	TCGA	2 cut(s)	175, 264
TasI	AATT	3 cut(s)	98, 234, 529
TfiI	GAWTC	1 cut(s)	514
TscAI	CASTG	2 cut(s)	559, 573
TseI	GCWGC	2 cut(s)	158, 338
TspDTI	ATGAA	2 cut(s)	150, 523
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	2 cut(s)	559, 573
XapI	RAATTY	2 cut(s)	98, 234
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.