Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Forward (+)

17267345 .. 17269261

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAATCGGCGCCGGACGAGTTCATCGGCGACGGCTTGGGCTCGAGGAAGCCTCGGCTTTTCATCAGGGAAATGGTCATGAGGAACTTCAAGTCTTACGCCGGTGAACAACGCGTTGGTCCTTTCCATAAGTTGTTGGACCTAATGGGAGTGGGAAGAGCAATGTCATTGATGCAATGCTGTTTGTATTCGGAAAGCGAGCTAAGCAGATGCGACTTAACAGAGTTTCGGAGCTCATTCATAACTCCACCGATGGCCAGAATATGGATTGATTTGGACGATGGGACGTTTGAAGCTGTTCCAAGAAGTGACTTTGTAATCACTAGGGTAGCGTATCGAGATAACTCCTCAAATTACCAGGAAGTGACGAAACTAAAAGGGAAACGAGTTGACCTGGACAACAATCGCTTCTTGATTCTTCAGGGTCAAGTGGAGCAGATTTCACTCATGAAGCCAAAAGCTCAGGGATCTCAGGATGAAGGTTTCTTTGAGTACCTTGAGGACATTATCGGGACCAGAAAATATATCGAAAAAATTGATGAGTCTTATAAAAAGTCCAAAGGGCATCAGCCCCACCCAAGGAATCAAGACCTAACAAGGACCACCCAAGGAATCAATGAAGTTGGCAATGGAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

213

Amino Acids

24.26

Weight (kDa)

6.34

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
AccB1I	GGYRCC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	264
AccII	CGCG	1 cut(s)	114
AclWI	GGATC	1 cut(s)	475
AcoI	YGGCCR	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	264, 579
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	91, 293
AjnI	CCWGG	2 cut(s)	357, 393
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	4 cut(s)	202, 234, 296, 461
AluI	AGCT	4 cut(s)	202, 234, 296, 461
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	4 cut(s)	119, 139, 513, 600
AsuHPI	GGTGA	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	43
AvaII	GGWCC	4 cut(s)	119, 139, 513, 600
BalI	TGGCCA	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	2 cut(s)	44, 236
Bbv12I	GWGCWC	1 cut(s)	236
BccI	CCATC	2 cut(s)	247, 275
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	2 cut(s)	359, 395
BfaI	CTAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	14
BlpI	GCTNAGC	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	359, 395
Bme18I	GGWCC	4 cut(s)	119, 139, 513, 600
BmeT110I	CYCGRG	1 cut(s)	43
BmgT120I	GGNCC	4 cut(s)	119, 139, 513, 600
BmiI	GGNNCC	2 cut(s)	12, 514
BmrFI	CCNGG	2 cut(s)	359, 395
BmsI	GCATC	3 cut(s)	162, 200, 574
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
Bpu10I	CCTNAGC	1 cut(s)	462
Bpu1102I	GCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	518
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	53, 578, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 579
Bse118I	RCCGGY	1 cut(s)	101
Bse3DI	GCAATG	3 cut(s)	168, 182, 634
BseBI	CCWGG	2 cut(s)	359, 395
BseDI	CCNNGG	3 cut(s)	53, 578, 607
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	264, 579
BseMI	GCAATG	3 cut(s)	168, 182, 634
BseMII	CTCAG	2 cut(s)	476, 485
BseRI	GAGGAG	1 cut(s)	337
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	14, 102
BslFI	GGGAC	2 cut(s)	298, 526
BslI	CCNNNNNNNGG	2 cut(s)	264, 579
BsmFI	GGGAC	2 cut(s)	298, 526
BsnI	GGCC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	44, 236
Bsp143I	GATC	1 cut(s)	467
Bsp1720I	GCTNAGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	2 cut(s)	475, 484
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	2 cut(s)	78, 447
BspLI	GGNNCC	2 cut(s)	12, 514
BspPI	GGATC	1 cut(s)	475
BspQI	GCTCTTC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	10
BsrDI	GCAATG	3 cut(s)	168, 182, 634
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	3 cut(s)	53, 578, 607
BssMI	GATC	1 cut(s)	467
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	2 cut(s)	578, 607
Bst2UI	CCWGG	2 cut(s)	359, 395
Bst6I	CTCTTC	1 cut(s)	151
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	3 cut(s)	203, 462, 471
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	1 cut(s)	470
BstMBI	GATC	1 cut(s)	467
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNI	CCWGG	2 cut(s)	359, 395
BstSCI	CCNGG	2 cut(s)	357, 393
BstUI	CGCG	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	200
CciI	TCATGA	2 cut(s)	78, 447
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	4 cut(s)	119, 139, 513, 600
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	2 cut(s)	79, 448
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	3 cut(s)	203, 462, 471
DinI	GGCGCC	1 cut(s)	12
DpnI	GATC	1 cut(s)	469
DpnII	GATC	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	578, 607
Eco24I	GRGCYC	2 cut(s)	44, 236
Eco47I	GGWCC	4 cut(s)	119, 139, 513, 600
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	357, 393
EcoT14I	CCWWGG	2 cut(s)	578, 607
EcoT38I	GRGCYC	2 cut(s)	44, 236
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
ErhI	CCWWGG	2 cut(s)	578, 607
FaeI	CATG	2 cut(s)	82, 451
FaiI	YATR	7 cut(s)	80, 129, 242, 265, 449, 525, 549
FaqI	GGGAC	2 cut(s)	298, 526
FatI	CATG	2 cut(s)	78, 447
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	2 cut(s)	44, 236
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	2 cut(s)	14, 102
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	82, 451
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	5 cut(s)	5, 415, 542, 583, 612
HpaII	CCGG	2 cut(s)	14, 102
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	107, 391
Hpy188I	TCNGA	2 cut(s)	193, 231
Hpy188III	TCNNGA	7 cut(s)	79, 338, 412, 448, 473, 511, 587
Hpy8I	GTNNAC	2 cut(s)	107, 391
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	473
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	3 cut(s)	203, 462, 471
HpySE526I	ACGT	1 cut(s)	287
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	82, 451
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	467
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	231, 433
LweI	GCATC	3 cut(s)	162, 200, 574
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	2 cut(s)	308, 364
MalI	GATC	1 cut(s)	469
MboI	GATC	1 cut(s)	467
MboII	GAAGA	2 cut(s)	168, 410
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	2 cut(s)	44, 236
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	2 cut(s)	352, 534
MluI	ACGCGT	1 cut(s)	112
MluNI	TGGCCA	1 cut(s)	257
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	6 cut(s)	39, 63, 75, 358, 493, 626
Mox20I	TGGCCA	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	2 cut(s)	14, 102
MspR9I	CCNGG	2 cut(s)	359, 395
MvaI	CCWGG	2 cut(s)	359, 395
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	204
NarI	GGCGCC	1 cut(s)	11
NdeII	GATC	1 cut(s)	467
NlaIII	CATG	2 cut(s)	82, 451
NlaIV	GGNNCC	2 cut(s)	12, 514
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	2 cut(s)	308, 364
PaeR7I	CTCGAG	1 cut(s)	43
PagI	TCATGA	2 cut(s)	78, 447
PciSI	GCTCTTC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	4 cut(s)	5, 415, 583, 612
PflMI	CCANNNNNTGG	1 cut(s)	264
PleI	GAGTC	1 cut(s)	550
PluTI	GGCGCC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	550
PsiI	TTATAA	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	2 cut(s)	357, 393
PspGI	CCWGG	2 cut(s)	357, 393
PspN4I	GGNNCC	2 cut(s)	12, 514
PspPI	GGNCC	4 cut(s)	119, 139, 513, 600
PspXI	VCTCGAGB	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	467
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SacI	GAGCTC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	218
Sau3AI	GATC	1 cut(s)	467
Sau96I	GGNCC	4 cut(s)	119, 139, 513, 600
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	359, 395
SduI	GDGCHC	2 cut(s)	44, 236
SfaNI	GCATC	3 cut(s)	162, 200, 574
SfoI	GGCGCC	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	43
SgrAI	CRCCGGYG	1 cut(s)	101
SinI	GGWCC	4 cut(s)	119, 139, 513, 600
SlaI	CTCGAG	1 cut(s)	43
SmlI	CTYRAG	2 cut(s)	43, 497
SmoI	CTYRAG	2 cut(s)	43, 497
Sse9I	AATT	2 cut(s)	352, 534
SspDI	GGCGCC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	357, 393
StyI	CCWWGG	2 cut(s)	578, 607
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	3 cut(s)	44, 337, 528
TasI	AATT	2 cut(s)	352, 534
TfiI	GAWTC	4 cut(s)	5, 415, 583, 612
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TseFI	GTSAC	2 cut(s)	308, 364
Tsp45I	GTSAC	2 cut(s)	308, 364
TspDTI	ATGAA	6 cut(s)	13, 52, 229, 464, 492, 633
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	4 cut(s)	119, 139, 513, 600
XhoI	CTCGAG	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.