Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

39868922 .. 39879304

Gene Structure 10383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG371100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3723 bp

ATGGAATCGCCGCCGGACAAGTTCATGGCCGATGGCTCGGAGTCGAGGAAGCCGAGGCTGTTCATCAGGGAAATGGTTATGAGCAACTTCAAGTCTTACGCCGGTGAACAACGCGTTGGTCCTTTTCACAAGAGCTTTTCTGCTGTTGTTGGACCTAATGGGAGTGGGAAGAGCAACGTCATAGATGCAATGCTCTTTGTATTCGGAAAACGAGCAAAGCAGATGCGACTTAACAGAGTTTCGGAGCTCATTCATAACTCCACTAATTGCCACAATATGGATAGTGCTCGAGTTTCTCTTCATTTCCAGGAGATCATTGATTTGGACGATGGGACGTTTGAAGCTGTTCCAGGAAGTGATTTTGTAATCACTAGGGTAGCATATCGGGATAACTCCTCCAGGTATTACATCAATGACCGTTCAAGCAATTTTACTCAAGTTACCAAGAAACTGAAAGGGAAAGGAGTTGACCTGGACAACAATCGCTTCTTGATTCTTCAGGGTGAAGTTGAGCAGATCTCACTCATGAAGCCAAAAGCTCAAGGATCTCAGGATGAAGGCCTCCTCGAGTACCTTGAGGACATTATTGGGACCAGCAAATATGTCGAAAAAATTGACAAATCTTATAAAGAGATAGAGTCCCTAAATGCGAAAAGATCTGGTGTCGTGCAAATGGTTAAGCTGGCAGAGAAAGAAAGAGATGGCTTGGAGGATGGGAAGAATGAAGCGGAAGCTTACATGCTGAAAGAGTTGTCCCTTCTAAATTGGCAAGAGAAAGCCACACAATTGGCTTATGAAGATACCTCTGCAAAAATGCTTGATCTGCAGGAAACTATAACCAGCTTAGAAGAAAATCTGAACAATGATAGGGAGAAGATCCAGGAGCGTCATAATGCACTGAAGGAGCTTGAATCTGTGTACGATAAACATATGAAACAAAAAGAGGAATTGTATCATACCCTCAACAGATATAAGGATGAATTTAAGCATCTTGAAAAGGAGCGTGCAAAATATCTGGTGAATCTGCAATATGTGGAGCAGAAGATCAAGAAACTTGATGAAAAACTTGAAAAGGATTCATTAAAGATTAATGACAGAGAGAAGGAATGTGAGAACTCGACTAATCAGATCCCAGAACTTGAGAAAAGTATTCCCCAACTGCGAAAACTCTTGTTGGATGAAGAAAAAGTCCTGGAGGAAATTATTGAGAATTGCAAAGGGGATACCGAAACATATCGCTGTGAGCTTACAACAGTTCGTTCCAGATTAGAACCTTGGGAAAAACAGCTGATTGAGCACCGGAAGAAATTTGATGTTGCATATACTGAACACGAGCTTTTGGATGAAAAGCATCAAGCTGGTCGTGCAGCTTTTGAAGACGCTCGAAAGCAGATGGATGATATATTGGGAATGATACAAACAAAAACTGCAGACATTGCAAAAATTCGGTGTGAGCTAGAAAAGAGCGAGTTCGAAAGGACGGAATACCGTAAAGCAGAACAGGAATACATCAAAGAACAAGAAGCTCTCATACCTTGTGAACAAGCTGCAAGACAGAAGGTTGCAGAACTCAAGCACCTTCTGGATTCTGAAAAGAGTAGGGGAAGACTTTTAAAAGCAATTTTACAGGCTAAGTTGTCCAACCGAATACCGGGAATACATGGCCGACTGGGTGATTTAGGTGCCATTGATGAGCAATATGATGTTGCCATATCAACGGCTTGCCCTGGACTTGATAATATTGTGGTGGAAACAACTGGTGGAGCAATAGCTTGTGTTGAGCTACTCCGAAGAGAGCATCTTGGTGTTGCTGATTTCATGATAATGGAAAAGATCACTGATTGTTTACCAGTGAGGAAGGAGAATGTAAGAACTCCAGAAGGAGTTCCACGCCTTTTCGATCTAGTTAGGGTTGAGGACCAGAGAATGAAACTTGCTTTCTTTAAGGCATTGAAGAATACTGTTGTAGCTAAAGATCTAGATCAGGCAGAACGTATTGCATATGGAGGAAACCCCAAATTTCGAGTGGTAACACTCGATGGTGCAGTATTTGAAATATCTGGTACTATGAGTGGTGGTGGAAGTAAGCCATGTGGTAGTAAGATTGGCCGATCTATATGTACTACTGTAGTGTCAGAAGAAGCTATTACAGATGCGAGCAGGGGGCTTGCTAGTATGGCTGATAAATTAAACGATATCCGCCAACATATTGCTGATGCAGCAAAGAGATATCAAGCCTCTGGAGATGCAATTGCACACTGGGAGTTGGAATTAGCTAAAAGCCAGAAAGAGATTGACAGTTTGAGTTCACAACATAGTTATCTTGAAAAGCAAATTGGTTCCTTGGAGGCTGCATCACAGCCGAAGAAGGATGAGCTTGATCAGCTAAGAAAGCTTGATAGTATCATTTCTGCTGAAGGAAATAAGATCGACGAACTCATCCAAGGATCTAAGCAGCTTAAGGAAAAGGCCTTGGAGCTTCAGCATAACATAGAAAATGCTGGTGGGGAAAGATTAAAAGTACAGAAGTCAAAGGTCGATAAGATTAAGTCCGATATTGATGAAAAGAACACTGAAATCAATTACTACAAAGTCCAGATTGAGACTGGCCAGAAAACTATAAAGGAGTTGAGAAAAGTGATTCAAGATTCAAAGAAGAAGAAAGAACGACAAGACAAGGAGAAGGAAACGTTATGTGAAAATTTCAAAGAAAAAGAAGAGAAGGCATCTCTAGTTCAAGAGAACTACGTGGAAACCCAGAAGCTGATTGATAACCATAAAGACGTGTTGGATAAAGCAAAATCTGAGTATTGCAATATGAAAAAGACTGTGTATGAATTGCGGGCATGGAAGGATAAAGCTGAGTTTGAACTAGAAGATATGAAGAAGAAATACAAGGATCTGAAATTTGAGGGGAAGGCTTACAAGGCCAGGCTTGATAAGTTGCAAATTGCCCTTATAAAGCATATGGATCAAATTCATAAAGATTTAGTGGACTCTGAAAAGGTTCAAGCAACCTTGGCAGATGAGCGTCTTAATAGTTGTTGTGACCTTAAAAGGGCCATTGAAATGGCAGCACTACTAGAAGCACAAATGAGAGAGATGAATCCAAATCTTGATTCAATCTCAGAGTACCAAAGAAAGGTCTTATTATATAACGAAAGAGTGGAGGATCTGAGTATTGTCACAAAACAGCGTGATGACATAAAGAGGCAGTATGATGAATTGAGAAAGAAGAGGTTGGATGACTTTATGGCAGGATTTAATGCAATATCTATGAAGTTAAAGGAAATGTATCAGATGATCACGCTGGGAGGTGATGCAGAATTTGAGCTAGTCGACTCCCTGGATCCTTTCTCCGAAGGTGTTGTCTTCAGCGTGAGACCACCAAAGAAGAGTTGGAAAAATATTTCAAACTTATCTGGTGGTGAAAAGACATTGAGCTCATTGGCTCTCGTGTTTGCACTGCATCATTACAAGCCTACGCCTCTTTATGTCATGGATGAAATTGATGCTGCCTTAGACTTTAAGAATGTCTCCATCGTTGGTCATTACGTGAAGGACCAGACAAAGGATGCACAGTTCATAATCATAAGCCTTAGAAATAATATGTTTGAGCTAGCGGATCGACTTGTGGGGATATACAAAACTCATAATTGCACAAAGAGCATTACCATCAACCCAGGGAGTTTTGTGATCTGCAATCAAGCTGCTCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1240

Amino Acids

142.03

Weight (kDa)

6.07

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	21 - 1222	4.7e-71	RecF/RecN/SMC N terminal domain
AAA_15	PF13175	22 - 373	4.8e-08	AAA ATPase domain
AAA_29	PF13555	24 - 80	1e-05	P-loop containing region of AAA domain
AAA_21	PF13304	46 - 70	1e-05	AAA domain, putative AbiEii toxin, Type IV TA system
SMC_hinge	PF06470	551 - 667	7.3e-20	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	627, 2960
AccB1I	GGYRCC	1 cut(s)	1682
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	3339
AccII	CGCG	1 cut(s)	114
AciI	CCGC	5 cut(s)	11, 728, 2200, 2842, 3623
AclI	AACGTT	1 cut(s)	2690
AcoI	YGGCCR	4 cut(s)	27, 1663, 2107, 2608
AcsI	RAATTY	8 cut(s)	980, 1307, 1443, 2018, 2701, 2906, 2976, 3326
AcuI	CTGAAG	5 cut(s)	482, 920, 2436, 2465, 3358
AfaI	GTAC	6 cut(s)	572, 920, 2065, 2122, 2523, 3134
AfiI	CCNNNNNNNGG	5 cut(s)	277, 1651, 3058, 3142, 3571
AflII	CTTAAG	1 cut(s)	2459
AflIII	ACRYGT	2 cut(s)	112, 2784
AjiI	CACGTC	1 cut(s)	2785
AjuI	GAANNNNNNNTTGG	6 cut(s)	99, 131, 2319, 2351, 3103, 3135
AloI	GAACNNNNNNTCC	2 cut(s)	3566, 3598
Alw21I	GWGCWC	4 cut(s)	249, 289, 1299, 3446
Alw26I	GTCTC	3 cut(s)	2597, 3376, 3541
AlwNI	CAGNNNCTG	1 cut(s)	2764
Ama87I	CYCGRG	2 cut(s)	288, 566
AoxI	GGCC	8 cut(s)	27, 559, 1663, 2107, 2469, 2608, 2928, 3060
ApeKI	GCWGC	8 cut(s)	1367, 1547, 2219, 2351, 2455, 3074, 3515, 3710
ApoI	RAATTY	8 cut(s)	980, 1307, 1443, 2018, 2701, 2906, 2976, 3326
ArsI	GACNNNNNNTTYG	2 cut(s)	3354, 3386
AseI	ATTAAT	1 cut(s)	1089
Asp700I	GAANNNNTTC	3 cut(s)	345, 1884, 3006
AspS9I	GGNCC	6 cut(s)	119, 152, 591, 1918, 3060, 3562
AsuC2I	CCSGG	1 cut(s)	1653
AsuHPI	GGTGA	6 cut(s)	116, 515, 1030, 1685, 3329, 3440
AsuII	TTCGAA	1 cut(s)	1473
AsuNHI	GCTAGC	1 cut(s)	3619
AvaI	CYCGRG	2 cut(s)	288, 566
AvaII	GGWCC	5 cut(s)	119, 152, 591, 1918, 3562
BalI	TGGCCA	1 cut(s)	2610
BamHI	GGATCC	1 cut(s)	3349
BanI	GGYRCC	1 cut(s)	1682
BanII	GRGCYC	2 cut(s)	249, 3446
BarI	GAAGNNNNNNTAC	4 cut(s)	1515, 1547, 2876, 2908
BauI	CACGAG	2 cut(s)	1331, 3455
BbsI	GAAGAC	3 cut(s)	1383, 1612, 3364
Bbv12I	GWGCWC	4 cut(s)	249, 289, 1299, 3446
BbvI	GCAGC	8 cut(s)	1379, 1534, 2231, 2338, 2467, 3086, 3502, 3697
BccI	CCATC	8 cut(s)	26, 323, 695, 707, 1387, 2033, 3548, 3683
BceAI	ACGGC	1 cut(s)	1734
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BciVI	GTATCC	1 cut(s)	1216
BclI	TGATCA	2 cut(s)	2380, 3303
BcnI	CCSGG	1 cut(s)	1653
BcoDI	GTCTC	3 cut(s)	2597, 3376, 3541
BfmI	CTRYAG	3 cut(s)	824, 1428, 2127
BfrI	CTTAAG	1 cut(s)	2459
BfuI	GTATCC	1 cut(s)	1216
BglII	AGATCT	3 cut(s)	516, 656, 1975
BisI	GCNGC	9 cut(s)	11, 1368, 1548, 2220, 2352, 2456, 3075, 3516, 3711
BlsI	GCNGC	9 cut(s)	12, 1369, 1549, 2221, 2353, 2457, 3076, 3517, 3712
Bme18I	GGWCC	5 cut(s)	119, 152, 591, 1918, 3562
BmeT110I	CYCGRG	2 cut(s)	288, 566
BmgBI	CACGTC	1 cut(s)	2785
BmgT120I	GGNCC	6 cut(s)	119, 152, 591, 1918, 3060, 3562
BmiI	GGNNCC	4 cut(s)	592, 1684, 2341, 3351
BmrI	ACTGGG	2 cut(s)	1679, 2269
BmtI	GCTAGC	1 cut(s)	3623
BmuI	ACTGGG	2 cut(s)	1679, 2269
BpiI	GAAGAC	3 cut(s)	1383, 1612, 3364
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	4 cut(s)	382, 1214, 1860, 2262
Bpu14I	TTCGAA	1 cut(s)	1473
BpuEI	CTTGAG	6 cut(s)	420, 525, 596, 1160, 1556, 3699
BpuMI	CCSGG	1 cut(s)	1653
BsaAI	YACGTR	2 cut(s)	2749, 3556
BsaBI	GATNNNNATC	1 cut(s)	1980
BsaI	GGTCTC	1 cut(s)	3376
BsaWI	WCCGGW	1 cut(s)	1299
Bsc4I	CCNNNNNNNGG	5 cut(s)	277, 1651, 3058, 3142, 3571
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	5 cut(s)	1674, 1762, 1850, 2264, 2611
Bse3DI	GCAATG	2 cut(s)	195, 1434
Bse8I	GATNNNNATC	1 cut(s)	1980
BseJI	GATNNNNATC	1 cut(s)	1980
BseLI	CCNNNNNNNGG	5 cut(s)	277, 1651, 3058, 3142, 3571
BseMI	GCAATG	2 cut(s)	195, 1434
BseMII	CTCAG	5 cut(s)	563, 2796, 2853, 3141, 3167
BseNI	ACTGG	5 cut(s)	1674, 1762, 1850, 2264, 2611
BseRI	GAGGAG	2 cut(s)	385, 554
BseXI	GCAGC	8 cut(s)	1379, 1534, 2231, 2338, 2467, 3086, 3502, 3697
BseYI	CCCAGC	1 cut(s)	3310
BsgI	GTGCAG	2 cut(s)	1386, 2064
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	8 cut(s)	29, 561, 1665, 2109, 2471, 2610, 2930, 3062
BshNI	GGYRCC	1 cut(s)	1682
BsiHKAI	GWGCWC	4 cut(s)	249, 289, 1299, 3446
BsiHKCI	CYCGRG	2 cut(s)	288, 566
BsiSI	CCGG	4 cut(s)	14, 102, 1300, 1652
BslFI	GGGAC	4 cut(s)	346, 604, 625, 739
BslI	CCNNNNNNNGG	5 cut(s)	277, 1651, 3058, 3142, 3571
BsmAI	GTCTC	3 cut(s)	2597, 3376, 3541
BsmFI	GGGAC	4 cut(s)	346, 604, 625, 739
BsnI	GGCC	8 cut(s)	29, 561, 1665, 2109, 2471, 2610, 2930, 3062
Bso31I	GGTCTC	1 cut(s)	3376
BsoBI	CYCGRG	2 cut(s)	288, 566
Bsp119I	TTCGAA	1 cut(s)	1473
Bsp1286I	GDGCHC	4 cut(s)	249, 289, 1299, 3446
BspACI	CCGC	5 cut(s)	11, 728, 2200, 2842, 3623
BspANI	GGCC	8 cut(s)	29, 561, 1665, 2109, 2471, 2610, 2930, 3062
BspCNI	CTCAG	5 cut(s)	562, 2797, 2854, 3140, 3168
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	2 cut(s)	525, 1818
BspLI	GGNNCC	4 cut(s)	592, 1684, 2341, 3351
BspMAI	CTGCAG	2 cut(s)	828, 1432
BspOI	GCTAGC	1 cut(s)	3623
BspQI	GCTCTTC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	1473
BspT107I	GGYRCC	1 cut(s)	1682
BspTI	CTTAAG	1 cut(s)	2459
BspTNI	GGTCTC	1 cut(s)	3376
BsrDI	GCAATG	2 cut(s)	195, 1434
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	5 cut(s)	1674, 1762, 1850, 2264, 2611
BssAI	RCCGGY	1 cut(s)	101
BssSI	CACGAG	2 cut(s)	1331, 3455
BssT1I	CCWWGG	5 cut(s)	1274, 2343, 2443, 2472, 3018
Bst2BI	CACGAG	2 cut(s)	1331, 3455
Bst4CI	ACNGT	8 cut(s)	419, 1255, 1490, 1963, 2128, 2300, 2830, 3582
Bst6I	CTCTTC	6 cut(s)	164, 303, 1786, 2712, 3230, 3389
BstAFI	CTTAAG	1 cut(s)	2459
BstAPI	GCANNNNNTGC	1 cut(s)	1436
BstBAI	YACGTR	2 cut(s)	2749, 3556
BstBI	TTCGAA	1 cut(s)	1473
BstC8I	GCNNGC	7 cut(s)	684, 1005, 1723, 2158, 2169, 2844, 3621
BstFNI	CGCG	1 cut(s)	114
BstMAI	GTCTC	3 cut(s)	2597, 3376, 3541
BstNSI	RCATGY	1 cut(s)	742
BstSFI	CTRYAG	3 cut(s)	824, 1428, 2127
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	8 cut(s)	1379, 1534, 2231, 2338, 2467, 3086, 3502, 3697
BstV2I	GAAGAC	3 cut(s)	1383, 1612, 3364
BstXI	CCANNNNNNTGG	2 cut(s)	787, 3070
BsuI	GTATCC	1 cut(s)	1216
BsuRI	GGCC	8 cut(s)	29, 561, 1665, 2109, 2471, 2610, 2930, 3062
BtrI	CACGTC	1 cut(s)	2785
BtsI	GCAGTG	1 cut(s)	3464
BtsIMutI	CAGTG	6 cut(s)	896, 1836, 1857, 2257, 2571, 3464
Cac8I	GCNNGC	7 cut(s)	684, 1005, 1723, 2158, 2169, 2844, 3621
CaiI	CAGNNNCTG	1 cut(s)	2764
CciI	TCATGA	2 cut(s)	525, 1818
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	6 cut(s)	119, 152, 591, 1918, 3060, 3562
CseI	GACGC	3 cut(s)	875, 1388, 3020
Csp6I	GTAC	6 cut(s)	571, 919, 2064, 2121, 2522, 3133
CviAII	CATG	8 cut(s)	25, 526, 739, 1661, 1819, 2091, 2847, 3499
CviQI	GTAC	6 cut(s)	571, 919, 2064, 2121, 2522, 3133
DraI	TTTAAA	1 cut(s)	1614
EaeI	YGGCCR	4 cut(s)	27, 1663, 2107, 2608
Eam1104I	CTCTTC	6 cut(s)	164, 303, 1786, 2712, 3230, 3389
EarI	CTCTTC	6 cut(s)	164, 303, 1786, 2712, 3230, 3389
EciI	GGCGGA	1 cut(s)	2189
Ecl136II	GAGCTC	2 cut(s)	247, 3444
Eco130I	CCWWGG	5 cut(s)	1274, 2343, 2443, 2472, 3018
Eco147I	AGGCCT	2 cut(s)	561, 2471
Eco24I	GRGCYC	2 cut(s)	249, 3446
Eco31I	GGTCTC	1 cut(s)	3376
Eco32I	GATATC	2 cut(s)	2197, 2231
Eco47I	GGWCC	5 cut(s)	119, 152, 591, 1918, 3562
Eco53kI	GAGCTC	2 cut(s)	247, 3444
Eco57I	CTGAAG	5 cut(s)	482, 920, 2436, 2465, 3358
Eco88I	CYCGRG	2 cut(s)	288, 566
EcoICRI	GAGCTC	2 cut(s)	247, 3444
EcoRV	GATATC	2 cut(s)	2197, 2231
EcoT14I	CCWWGG	5 cut(s)	1274, 2343, 2443, 2472, 3018
EcoT38I	GRGCYC	2 cut(s)	249, 3446
ErhI	CCWWGG	5 cut(s)	1274, 2343, 2443, 2472, 3018
FaeI	CATG	8 cut(s)	28, 529, 742, 1664, 1822, 2094, 2850, 3502
FaqI	GGGAC	4 cut(s)	346, 604, 625, 739
FatI	CATG	8 cut(s)	24, 525, 738, 1660, 1818, 2090, 2846, 3498
FauI	CCCGC	1 cut(s)	2835
FauNDI	CATATG	3 cut(s)	930, 2002, 2967
FbaI	TGATCA	2 cut(s)	2380, 3303
FblI	GTMKAC	1 cut(s)	3339
Fnu4HI	GCNGC	9 cut(s)	11, 1368, 1548, 2220, 2352, 2456, 3075, 3516, 3711
FriOI	GRGCYC	2 cut(s)	249, 3446
Fsp4HI	GCNGC	9 cut(s)	11, 1368, 1548, 2220, 2352, 2456, 3075, 3516, 3711
GluI	GCNGC	9 cut(s)	11, 1368, 1548, 2220, 2352, 2456, 3075, 3516, 3711
GsaI	CCCAGC	1 cut(s)	3314
GsuI	CTGGAG	4 cut(s)	382, 1214, 1860, 2262
HaeIII	GGCC	8 cut(s)	29, 561, 1665, 2109, 2471, 2610, 2930, 3062
HapII	CCGG	4 cut(s)	14, 102, 1300, 1652
HgaI	GACGC	3 cut(s)	875, 1388, 3020
Hin1II	CATG	8 cut(s)	28, 529, 742, 1664, 1822, 2094, 2850, 3502
HincII	GTYRAC	2 cut(s)	469, 3340
HindII	GTYRAC	2 cut(s)	469, 3340
HindIII	AAGCTT	2 cut(s)	732, 2393
HpaII	CCGG	4 cut(s)	14, 102, 1300, 1652
HphI	GGTGA	6 cut(s)	116, 515, 1030, 1685, 3329, 3440
Hpy166II	GTNNAC	8 cut(s)	107, 469, 919, 1541, 1847, 2309, 2995, 3340
Hpy8I	GTNNAC	8 cut(s)	107, 469, 919, 1541, 1847, 2309, 2995, 3340
Hpy99I	CGWCG	1 cut(s)	2435
HpyCH4III	ACNGT	8 cut(s)	419, 1255, 1490, 1963, 2128, 2300, 2830, 3582
HpyCH4IV	ACGT	7 cut(s)	177, 335, 1993, 2690, 2748, 2784, 3555
HpySE526I	ACGT	7 cut(s)	177, 335, 1993, 2690, 2748, 2784, 3555
Hsp92II	CATG	8 cut(s)	28, 529, 742, 1664, 1822, 2094, 2850, 3502
Ksp22I	TGATCA	2 cut(s)	2380, 3303
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	7 cut(s)	244, 883, 904, 1000, 1036, 1763, 2476
Lsp1109I	GCAGC	8 cut(s)	1379, 1534, 2231, 2338, 2467, 3086, 3502, 3697
MaeII	ACGT	7 cut(s)	177, 335, 1993, 2690, 2748, 2784, 3555
MaeIII	GTNAC	4 cut(s)	439, 2029, 3047, 3184
MfeI	CAATTG	2 cut(s)	785, 2250
MhlI	GDGCHC	4 cut(s)	249, 289, 1299, 3446
MlsI	TGGCCA	1 cut(s)	2610
MluI	ACGCGT	1 cut(s)	112
MluNI	TGGCCA	1 cut(s)	2610
MlyI	GAGTC	4 cut(s)	50, 647, 2990, 3335
MmeI	TCCRAC	7 cut(s)	130, 1155, 1665, 2247, 2769, 3222, 3380
Mox20I	TGGCCA	1 cut(s)	2610
MroXI	GAANNNNTTC	3 cut(s)	345, 1884, 3006
MscI	TGGCCA	1 cut(s)	2610
MslI	CAYNNNNRTG	3 cut(s)	1803, 1823, 3068
Msp20I	TGGCCA	1 cut(s)	2610
MspA1I	CMGCKG	1 cut(s)	1288
MspCI	CTTAAG	1 cut(s)	2459
MspI	CCGG	4 cut(s)	14, 102, 1300, 1652
MunI	CAATTG	2 cut(s)	785, 2250
MvnI	CGCG	1 cut(s)	114
NciI	CCSGG	1 cut(s)	1653
NdeI	CATATG	3 cut(s)	930, 2002, 2967
NheI	GCTAGC	1 cut(s)	3619
NlaIII	CATG	8 cut(s)	28, 529, 742, 1664, 1822, 2094, 2850, 3502
NlaIV	GGNNCC	4 cut(s)	592, 1684, 2341, 3351
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	3047, 3184
NspI	RCATGY	1 cut(s)	742
NspV	TTCGAA	1 cut(s)	1473
PaeR7I	CTCGAG	2 cut(s)	288, 566
PagI	TCATGA	2 cut(s)	525, 1818
PasI	CCCWGGG	1 cut(s)	3683
PceI	AGGCCT	2 cut(s)	561, 2471
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PdmI	GAANNNNTTC	3 cut(s)	345, 1884, 3006
PflMI	CCANNNNNTGG	1 cut(s)	277
PfoI	TCCNGGA	4 cut(s)	306, 349, 879, 1191
PkrI	GCNGC	9 cut(s)	12, 1369, 1549, 2221, 2353, 2457, 3076, 3517, 3712
PleI	GAGTC	4 cut(s)	49, 646, 2990, 3335
PpsI	GAGTC	4 cut(s)	49, 646, 2990, 3335
Ppu21I	YACGTR	2 cut(s)	2749, 3556
PshBI	ATTAAT	1 cut(s)	1089
PsiI	TTATAA	2 cut(s)	627, 2960
Psp124BI	GAGCTC	2 cut(s)	249, 3446
Psp1406I	AACGTT	1 cut(s)	2690
PspFI	CCCAGC	1 cut(s)	3310
PspN4I	GGNNCC	4 cut(s)	592, 1684, 2341, 3351
PspPI	GGNCC	6 cut(s)	119, 152, 591, 1918, 3060, 3562
PspXI	VCTCGAGB	2 cut(s)	288, 566
PstI	CTGCAG	2 cut(s)	828, 1432
PstNI	CAGNNNCTG	1 cut(s)	2764
PvuII	CAGCTG	1 cut(s)	1288
RsaI	GTAC	6 cut(s)	572, 920, 2065, 2122, 2523, 3134
RsaNI	GTAC	6 cut(s)	571, 919, 2064, 2121, 2522, 3133
RseI	CAYNNNNRTG	3 cut(s)	1803, 1823, 3068
SacI	GAGCTC	2 cut(s)	249, 3446
SalI	GTCGAC	1 cut(s)	3338
SapI	GCTCTTC	1 cut(s)	164
SatI	GCNGC	9 cut(s)	11, 1368, 1548, 2220, 2352, 2456, 3075, 3516, 3711
Sau96I	GGNCC	6 cut(s)	119, 152, 591, 1918, 3060, 3562
SchI	GAGTC	4 cut(s)	50, 647, 2990, 3335
SduI	GDGCHC	4 cut(s)	249, 289, 1299, 3446
SfcI	CTRYAG	3 cut(s)	824, 1428, 2127
Sfr274I	CTCGAG	2 cut(s)	288, 566
SfuI	TTCGAA	1 cut(s)	1473
SgrAI	CRCCGGYG	1 cut(s)	101
SinI	GGWCC	5 cut(s)	119, 152, 591, 1918, 3562
SlaI	CTCGAG	2 cut(s)	288, 566
SmiMI	CAYNNNNRTG	3 cut(s)	1803, 1823, 3068
SmlI	CTYRAG	9 cut(s)	288, 435, 540, 566, 575, 1139, 1571, 2459, 3714
SmoI	CTYRAG	9 cut(s)	288, 435, 540, 566, 575, 1139, 1571, 2459, 3714
SseBI	AGGCCT	2 cut(s)	561, 2471
SsiI	CCGC	5 cut(s)	11, 728, 2200, 2842, 3623
SspI	AATATT	2 cut(s)	1741, 3409
SstI	GAGCTC	2 cut(s)	249, 3446
StuI	AGGCCT	2 cut(s)	561, 2471
StyI	CCWWGG	5 cut(s)	1274, 2343, 2443, 2472, 3018
TaaI	ACNGT	8 cut(s)	419, 1255, 1490, 1963, 2128, 2300, 2830, 3582
TaiI	ACGT	7 cut(s)	180, 338, 1996, 2693, 2751, 2787, 3558
TatI	WGTACW	2 cut(s)	2120, 2521
TauI	GCSGC	1 cut(s)	13
TscAI	CASTG	6 cut(s)	903, 1843, 1857, 2264, 2578, 3471
TseFI	GTSAC	2 cut(s)	3047, 3184
TseI	GCWGC	8 cut(s)	1367, 1547, 2219, 2351, 2455, 3074, 3515, 3710
Tsp45I	GTSAC	2 cut(s)	3047, 3184
TspGWI	ACGGA	1 cut(s)	1496
TspRI	CASTG	6 cut(s)	903, 1843, 1857, 2264, 2578, 3471
Van91I	CCANNNNNTGG	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	2459
VpaK11BI	GGWCC	5 cut(s)	119, 152, 591, 1918, 3562
VspI	ATTAAT	1 cut(s)	1089
XapI	RAATTY	8 cut(s)	980, 1307, 1443, 2018, 2701, 2906, 2976, 3326
XbaI	TCTAGA	1 cut(s)	1978
XceI	RCATGY	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	3 cut(s)	2023, 2603, 3396
XhoI	CTCGAG	2 cut(s)	288, 566
XmiI	GTMKAC	1 cut(s)	3339
XmnI	GAANNNNTTC	3 cut(s)	345, 1884, 3006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.