Structural maintenance of chromosomes protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 645 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 295 |
| AccBSI | CCGCTC | 2 cut(s) | 2094, 3539 |
| AccII | CGCG | 3 cut(s) | 132, 405, 2113 |
| AclWI | GGATC | 5 cut(s) | 505, 571, 3201, 3365, 3378 |
| AcoI | YGGCCR | 2 cut(s) | 1681, 2629 |
| AcsI | RAATTY | 7 cut(s) | 998, 1461, 2036, 2326, 2723, 2997, 3436 |
| AcuI | CTGAAG | 6 cut(s) | 474, 500, 782, 2387, 2501, 3402 |
| AfaI | GTAC | 3 cut(s) | 1342, 1891, 2086 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 295, 1669, 2117, 3079, 3091, 3592 |
| AflII | CTTAAG | 1 cut(s) | 1589 |
| AflIII | ACRYGT | 1 cut(s) | 130 |
| AhlI | ACTAGT | 1 cut(s) | 1775 |
| AjnI | CCWGG | 7 cut(s) | 324, 367, 489, 2001, 3039, 3366, 3703 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 117, 149, 3124, 3156 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 300, 332, 3587, 3619 |
| Alw21I | GWGCWC | 5 cut(s) | 939, 1317, 2068, 2190, 3467 |
| Alw26I | GTCTC | 3 cut(s) | 2618, 3172, 3562 |
| Alw44I | GTGCAC | 1 cut(s) | 2064 |
| AlwI | GGATC | 5 cut(s) | 505, 571, 3201, 3365, 3378 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 295 |
| Ama87I | CYCGRG | 2 cut(s) | 46, 70 |
| AoxI | GGCC | 6 cut(s) | 66, 1681, 2490, 2629, 3081, 3568 |
| ApaI | GGGCCC | 1 cut(s) | 3085 |
| ApaLI | GTGCAC | 1 cut(s) | 2064 |
| ApeKI | GCWGC | 7 cut(s) | 1565, 1781, 1964, 2192, 2372, 2476, 3731 |
| ApoI | RAATTY | 7 cut(s) | 998, 1461, 2036, 2326, 2723, 2997, 3436 |
| AseI | ATTAAT | 2 cut(s) | 429, 1107 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 363, 579, 1902, 2997, 3027 |
| AspLEI | GCGC | 1 cut(s) | 3112 |
| AspS9I | GGNCC | 7 cut(s) | 67, 137, 170, 3081, 3082, 3568, 3583 |
| AsuHPI | GGTGA | 9 cut(s) | 134, 533, 706, 1703, 2540, 2671, 3350, 3461, 3685 |
| AsuNHI | GCTAGC | 1 cut(s) | 2407 |
| AvaI | CYCGRG | 2 cut(s) | 46, 70 |
| AvaII | GGWCC | 3 cut(s) | 137, 170, 3583 |
| AxyI | CCTNAGG | 1 cut(s) | 3620 |
| BaeGI | GKGCMC | 3 cut(s) | 2068, 2132, 3085 |
| BalI | TGGCCA | 1 cut(s) | 2631 |
| BamHI | GGATCC | 1 cut(s) | 3370 |
| BanII | GRGCYC | 3 cut(s) | 2190, 3085, 3467 |
| Bbv12I | GWGCWC | 5 cut(s) | 939, 1317, 2068, 2190, 3467 |
| BbvI | GCAGC | 7 cut(s) | 1552, 1793, 1976, 2204, 2359, 2488, 3718 |
| BccI | CCATC | 7 cut(s) | 341, 713, 2054, 2119, 2281, 2443, 3704 |
| BceAI | ACGGC | 1 cut(s) | 52 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 3713 |
| BciT130I | CCWGG | 7 cut(s) | 326, 369, 491, 2003, 3041, 3368, 3705 |
| BciVI | GTATCC | 1 cut(s) | 811 |
| BclI | TGATCA | 2 cut(s) | 2581, 3324 |
| BcoDI | GTCTC | 3 cut(s) | 2618, 3172, 3562 |
| BcuI | ACTAGT | 1 cut(s) | 1775 |
| BfaI | CTAG | 8 cut(s) | 390, 593, 1211, 1776, 2408, 2912, 3356, 3542 |
| BfmI | CTRYAG | 2 cut(s) | 159, 2501 |
| BfrI | CTTAAG | 1 cut(s) | 1589 |
| BfuI | GTATCC | 1 cut(s) | 811 |
| BglII | AGATCT | 3 cut(s) | 330, 674, 1993 |
| BlpI | GCTNAGC | 1 cut(s) | 234 |
| BmcAI | AGTACT | 1 cut(s) | 1891 |
| Bme1390I | CCNGG | 7 cut(s) | 326, 369, 491, 2003, 3041, 3368, 3705 |
| Bme18I | GGWCC | 3 cut(s) | 137, 170, 3583 |
| BmeT110I | CYCGRG | 2 cut(s) | 46, 70 |
| BmgT120I | GGNCC | 7 cut(s) | 67, 137, 170, 3081, 3082, 3568, 3583 |
| BmiI | GGNNCC | 6 cut(s) | 40, 69, 172, 2362, 3083, 3372 |
| BmrFI | CCNGG | 7 cut(s) | 326, 369, 491, 2003, 3041, 3368, 3705 |
| BmrI | ACTGGG | 1 cut(s) | 1433 |
| BmtI | GCTAGC | 1 cut(s) | 2411 |
| BmuI | ACTGGG | 1 cut(s) | 1433 |
| BoxI | GACNNNNGTC | 1 cut(s) | 48 |
| BpmI | CTGGAG | 3 cut(s) | 327, 1878, 2945 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1650 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 234 |
| BpuEI | CTTGAG | 5 cut(s) | 543, 1178, 2366, 2714, 3371 |
| Bsa29I | ATCGAT | 1 cut(s) | 3531 |
| BsaAI | YACGTR | 1 cut(s) | 3577 |
| BsaI | GGTCTC | 1 cut(s) | 3172 |
| BsaJI | CCNNGG | 7 cut(s) | 63, 71, 822, 1292, 2196, 3039, 3366 |
| BsaWI | WCCGGW | 1 cut(s) | 3585 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 300, 330, 2912, 2942 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 295, 1669, 2117, 3079, 3091, 3592 |
| Bse118I | RCCGGY | 1 cut(s) | 119 |
| Bse1I | ACTGG | 4 cut(s) | 1428, 2148, 2632, 3657 |
| Bse21I | CCTNAGG | 1 cut(s) | 3620 |
| Bse3DI | GCAATG | 4 cut(s) | 199, 213, 2013, 3485 |
| BseBI | CCWGG | 7 cut(s) | 326, 369, 491, 2003, 3041, 3368, 3705 |
| BseCI | ATCGAT | 1 cut(s) | 3531 |
| BseDI | CCNNGG | 7 cut(s) | 63, 71, 822, 1292, 2196, 3039, 3366 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 295, 1669, 2117, 3079, 3091, 3592 |
| BseMI | GCAATG | 4 cut(s) | 199, 213, 2013, 3485 |
| BseMII | CTCAG | 7 cut(s) | 924, 994, 1251, 1335, 2169, 2274, 2586 |
| BseNI | ACTGG | 4 cut(s) | 1428, 2148, 2632, 3657 |
| BseRI | GAGGAG | 2 cut(s) | 403, 1361 |
| BseSI | GKGCMC | 3 cut(s) | 2068, 2132, 3085 |
| BseXI | GCAGC | 7 cut(s) | 1552, 1793, 1976, 2204, 2359, 2488, 3718 |
| BseYI | CCCAGC | 1 cut(s) | 3331 |
| BsgI | GTGCAG | 1 cut(s) | 1800 |
| Bsh1236I | CGCG | 3 cut(s) | 132, 405, 2113 |
| BshFI | GGCC | 6 cut(s) | 68, 1683, 2492, 2631, 3083, 3570 |
| BshVI | ATCGAT | 1 cut(s) | 3531 |
| BsiHKAI | GWGCWC | 5 cut(s) | 939, 1317, 2068, 2190, 3467 |
| BsiHKCI | CYCGRG | 2 cut(s) | 46, 70 |
| BsiSI | CCGG | 2 cut(s) | 120, 3586 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 295, 1669, 2117, 3079, 3091, 3592 |
| BsmAI | GTCTC | 3 cut(s) | 2618, 3172, 3562 |
| BsmI | GAATGC | 1 cut(s) | 1955 |
| BsnI | GGCC | 6 cut(s) | 68, 1683, 2492, 2631, 3083, 3570 |
| Bso31I | GGTCTC | 1 cut(s) | 3172 |
| BsoBI | CYCGRG | 2 cut(s) | 46, 70 |
| Bsp120I | GGGCCC | 1 cut(s) | 3081 |
| Bsp1286I | GDGCHC | 7 cut(s) | 939, 1317, 2068, 2132, 2190, 3085, 3467 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 234 |
| Bsp19I | CCATGG | 1 cut(s) | 2196 |
| Bsp68I | TCGCGA | 1 cut(s) | 405 |
| BspANI | GGCC | 6 cut(s) | 68, 1683, 2492, 2631, 3083, 3570 |
| BspCNI | CTCAG | 7 cut(s) | 925, 993, 1252, 1336, 2170, 2273, 2587 |
| BspDI | ATCGAT | 1 cut(s) | 3531 |
| BspFNI | CGCG | 3 cut(s) | 132, 405, 2113 |
| BspHI | TCATGA | 3 cut(s) | 568, 811, 2677 |
| BspLI | GGNNCC | 6 cut(s) | 40, 69, 172, 2362, 3083, 3372 |
| BspMAI | CTGCAG | 1 cut(s) | 163 |
| BspOI | GCTAGC | 1 cut(s) | 2411 |
| BspPI | GGATC | 5 cut(s) | 505, 571, 3201, 3365, 3378 |
| BspTI | CTTAAG | 1 cut(s) | 1589 |
| BspTNI | GGTCTC | 1 cut(s) | 3172 |
| BsrBI | CCGCTC | 2 cut(s) | 2094, 3539 |
| BsrDI | GCAATG | 4 cut(s) | 199, 213, 2013, 3485 |
| BsrFI | RCCGGY | 1 cut(s) | 119 |
| BsrI | ACTGG | 4 cut(s) | 1428, 2148, 2632, 3657 |
| BssAI | RCCGGY | 1 cut(s) | 119 |
| BssECI | CCNNGG | 7 cut(s) | 63, 71, 822, 1292, 2196, 3039, 3366 |
| BssT1I | CCWWGG | 3 cut(s) | 63, 1292, 2196 |
| Bst2UI | CCWGG | 7 cut(s) | 326, 369, 491, 2003, 3041, 3368, 3705 |
| Bst4CI | ACNGT | 6 cut(s) | 437, 1627, 2321, 2557, 2851, 3603 |
| Bst6I | CTCTTC | 3 cut(s) | 15, 3251, 3410 |
| BstAFI | CTTAAG | 1 cut(s) | 1589 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1961 |
| BstBAI | YACGTR | 1 cut(s) | 3577 |
| BstC8I | GCNNGC | 9 cut(s) | 231, 442, 1487, 1741, 2190, 2278, 2409, 2865, 2958 |
| BstDSI | CCRYGG | 2 cut(s) | 822, 2196 |
| BstFNI | CGCG | 3 cut(s) | 132, 405, 2113 |
| BstHHI | GCGC | 1 cut(s) | 3112 |
| BstMAI | GTCTC | 3 cut(s) | 2618, 3172, 3562 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 65, 235, 1709, 1787, 1908, 1961, 2404, 3041 |
| BstNI | CCWGG | 7 cut(s) | 326, 369, 491, 2003, 3041, 3368, 3705 |
| BstNSI | RCATGY | 5 cut(s) | 760, 1052, 1341, 1649, 1794 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 48 |
| BstSCI | CCNGG | 7 cut(s) | 324, 367, 489, 2001, 3039, 3366, 3703 |
| BstSFI | CTRYAG | 2 cut(s) | 159, 2501 |
| BstSLI | GKGCMC | 3 cut(s) | 2068, 2132, 3085 |
| BstUI | CGCG | 3 cut(s) | 132, 405, 2113 |
| BstV1I | GCAGC | 7 cut(s) | 1552, 1793, 1976, 2204, 2359, 2488, 3718 |
| BstX2I | RGATCY | 6 cut(s) | 330, 563, 674, 1993, 3193, 3370 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 805 |
| BstYI | RGATCY | 6 cut(s) | 330, 563, 674, 1993, 3193, 3370 |
| Bsu15I | ATCGAT | 1 cut(s) | 3531 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3620 |
| BsuI | GTATCC | 1 cut(s) | 811 |
| BsuRI | GGCC | 6 cut(s) | 68, 1683, 2492, 2631, 3083, 3570 |
| BsuTUI | ATCGAT | 1 cut(s) | 3531 |
| BtgI | CCRYGG | 2 cut(s) | 822, 2196 |
| BtsI | GCAGTG | 1 cut(s) | 2247 |
| BtsIMutI | CAGTG | 5 cut(s) | 450, 539, 2155, 2247, 2592 |
| BtuMI | TCGCGA | 1 cut(s) | 405 |
| Cac8I | GCNNGC | 9 cut(s) | 231, 442, 1487, 1741, 2190, 2278, 2409, 2865, 2958 |
| CaiI | CAGNNNCTG | 1 cut(s) | 295 |
| CciI | TCATGA | 3 cut(s) | 568, 811, 2677 |
| CfoI | GCGC | 1 cut(s) | 3112 |
| Cfr10I | RCCGGY | 1 cut(s) | 119 |
| Cfr13I | GGNCC | 7 cut(s) | 67, 137, 170, 3081, 3082, 3568, 3583 |
| ClaI | ATCGAT | 1 cut(s) | 3531 |
| CseI | GACGC | 2 cut(s) | 1718, 3388 |
| Csp6I | GTAC | 3 cut(s) | 1341, 1890, 2085 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 163, 198 |
| CviQI | GTAC | 3 cut(s) | 1341, 1890, 2085 |
| DraI | TTTAAA | 3 cut(s) | 1632, 2752, 2890 |
| EaeI | YGGCCR | 2 cut(s) | 1681, 2629 |
| Eam1104I | CTCTTC | 3 cut(s) | 15, 3251, 3410 |
| EarI | CTCTTC | 3 cut(s) | 15, 3251, 3410 |
| EciI | GGCGGA | 1 cut(s) | 2210 |
| Ecl136II | GAGCTC | 2 cut(s) | 2188, 3465 |
| Eco130I | CCWWGG | 3 cut(s) | 63, 1292, 2196 |
| Eco147I | AGGCCT | 1 cut(s) | 2492 |
| Eco24I | GRGCYC | 3 cut(s) | 2190, 3085, 3467 |
| Eco31I | GGTCTC | 1 cut(s) | 3172 |
| Eco32I | GATATC | 1 cut(s) | 2252 |
| Eco47I | GGWCC | 3 cut(s) | 137, 170, 3583 |
| Eco53kI | GAGCTC | 2 cut(s) | 2188, 3465 |
| Eco57I | CTGAAG | 6 cut(s) | 474, 500, 782, 2387, 2501, 3402 |
| Eco81I | CCTNAGG | 1 cut(s) | 3620 |
| Eco88I | CYCGRG | 2 cut(s) | 46, 70 |
| EcoICRI | GAGCTC | 2 cut(s) | 2188, 3465 |
| EcoO109I | RGGNCCY | 3 cut(s) | 67, 3081, 3082 |
| EcoRI | GAATTC | 1 cut(s) | 2326 |
| EcoRII | CCWGG | 7 cut(s) | 324, 367, 489, 2001, 3039, 3366, 3703 |
| EcoRV | GATATC | 1 cut(s) | 2252 |
| EcoT14I | CCWWGG | 3 cut(s) | 63, 1292, 2196 |
| EcoT22I | ATGCAT | 1 cut(s) | 916 |
| EcoT38I | GRGCYC | 3 cut(s) | 2190, 3085, 3467 |
| ErhI | CCWWGG | 3 cut(s) | 63, 1292, 2196 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 567, 599, 951, 983, 1845, 1877, 2676, 2708 |
| FauI | CCCGC | 2 cut(s) | 2018, 2856 |
| FauNDI | CATATG | 2 cut(s) | 2020, 2988 |
| FbaI | TGATCA | 2 cut(s) | 2581, 3324 |
| FriOI | GRGCYC | 3 cut(s) | 2190, 3085, 3467 |
| FspBI | CTAG | 8 cut(s) | 390, 593, 1211, 1776, 2408, 2912, 3356, 3542 |
| GlaI | GCGC | 1 cut(s) | 3111 |
| GsaI | CCCAGC | 1 cut(s) | 3335 |
| GsuI | CTGGAG | 3 cut(s) | 327, 1878, 2945 |
| HaeIII | GGCC | 6 cut(s) | 68, 1683, 2492, 2631, 3083, 3570 |
| HapII | CCGG | 2 cut(s) | 120, 3586 |
| HgaI | GACGC | 2 cut(s) | 1718, 3388 |
| HhaI | GCGC | 1 cut(s) | 3112 |
| Hin6I | GCGC | 1 cut(s) | 3110 |
| HinP1I | GCGC | 1 cut(s) | 3110 |
| HincII | GTYRAC | 2 cut(s) | 487, 2553 |
| HindII | GTYRAC | 2 cut(s) | 487, 2553 |
| HindIII | AAGCTT | 3 cut(s) | 1352, 1487, 3026 |
| HpaI | GTTAAC | 1 cut(s) | 2553 |
| HpaII | CCGG | 2 cut(s) | 120, 3586 |
| HphI | GGTGA | 9 cut(s) | 134, 533, 706, 1703, 2540, 2671, 3350, 3461, 3685 |
| Hpy166II | GTNNAC | 7 cut(s) | 125, 487, 1559, 2066, 2553, 3016, 3361 |
| Hpy8I | GTNNAC | 7 cut(s) | 125, 487, 1559, 2066, 2553, 3016, 3361 |
| Hpy99I | CGWCG | 1 cut(s) | 2046 |
| HpyCH4III | ACNGT | 6 cut(s) | 437, 1627, 2321, 2557, 2851, 3603 |
| HpyCH4IV | ACGT | 2 cut(s) | 621, 3576 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 65, 235, 1709, 1787, 1908, 1961, 2404, 3041 |
| HpySE526I | ACGT | 2 cut(s) | 621, 3576 |
| HspAI | GCGC | 1 cut(s) | 3110 |
| Ksp22I | TGATCA | 2 cut(s) | 2581, 3324 |
| KspAI | GTTAAC | 1 cut(s) | 2553 |
| LmnI | GCTCC | 5 cut(s) | 44, 56, 922, 2185, 2920 |
| Lsp1109I | GCAGC | 7 cut(s) | 1552, 1793, 1976, 2204, 2359, 2488, 3718 |
| MaeI | CTAG | 8 cut(s) | 390, 593, 1211, 1776, 2408, 2912, 3356, 3542 |
| MaeII | ACGT | 2 cut(s) | 621, 3576 |
| MaeIII | GTNAC | 7 cut(s) | 457, 771, 2027, 2050, 2942, 3068, 3205 |
| MbiI | CCGCTC | 2 cut(s) | 2094, 3539 |
| MfeI | CAATTG | 2 cut(s) | 2271, 3113 |
| MflI | RGATCY | 6 cut(s) | 330, 563, 674, 1993, 3193, 3370 |
| MhlI | GDGCHC | 7 cut(s) | 939, 1317, 2068, 2132, 2190, 3085, 3467 |
| MlsI | TGGCCA | 1 cut(s) | 2631 |
| MluI | ACGCGT | 1 cut(s) | 130 |
| MluNI | TGGCCA | 1 cut(s) | 2631 |
| MlyI | GAGTC | 7 cut(s) | 38, 1088, 1127, 1624, 1649, 3011, 3356 |
| MmeI | TCCRAC | 6 cut(s) | 66, 148, 1683, 2790, 3243, 3401 |
| Mox20I | TGGCCA | 1 cut(s) | 2631 |
| Mph1103I | ATGCAT | 1 cut(s) | 916 |
| MroXI | GAANNNNTTC | 5 cut(s) | 363, 579, 1902, 2997, 3027 |
| MscI | TGGCCA | 1 cut(s) | 2631 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1763, 1789, 2802 |
| Msp20I | TGGCCA | 1 cut(s) | 2631 |
| MspA1I | CMGCKG | 1 cut(s) | 2479 |
| MspCI | CTTAAG | 1 cut(s) | 1589 |
| MspI | CCGG | 2 cut(s) | 120, 3586 |
| MspR9I | CCNGG | 7 cut(s) | 326, 369, 491, 2003, 3041, 3368, 3705 |
| MunI | CAATTG | 2 cut(s) | 2271, 3113 |
| Mva1269I | GAATGC | 1 cut(s) | 1955 |
| MvaI | CCWGG | 7 cut(s) | 326, 369, 491, 2003, 3041, 3368, 3705 |
| MvnI | CGCG | 3 cut(s) | 132, 405, 2113 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 65, 235, 1709, 1787, 1908, 1961, 2404, 3041 |
| NcoI | CCATGG | 1 cut(s) | 2196 |
| NdeI | CATATG | 2 cut(s) | 2020, 2988 |
| NheI | GCTAGC | 1 cut(s) | 2407 |
| NlaIV | GGNNCC | 6 cut(s) | 40, 69, 172, 2362, 3083, 3372 |
| NmuCI | GTSAC | 3 cut(s) | 771, 3068, 3205 |
| NruI | TCGCGA | 1 cut(s) | 405 |
| NsiI | ATGCAT | 1 cut(s) | 916 |
| NspI | RCATGY | 5 cut(s) | 760, 1052, 1341, 1649, 1794 |
| PagI | TCATGA | 3 cut(s) | 568, 811, 2677 |
| PceI | AGGCCT | 1 cut(s) | 2492 |
| PctI | GAATGC | 1 cut(s) | 1955 |
| PdmI | GAANNNNTTC | 5 cut(s) | 363, 579, 1902, 2997, 3027 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 295 |
| PfoI | TCCNGGA | 3 cut(s) | 324, 367, 3703 |
| PleI | GAGTC | 7 cut(s) | 38, 1088, 1127, 1623, 1649, 3011, 3356 |
| PpsI | GAGTC | 7 cut(s) | 38, 1088, 1127, 1623, 1649, 3011, 3356 |
| Ppu21I | YACGTR | 1 cut(s) | 3577 |
| PshAI | GACNNNNGTC | 1 cut(s) | 48 |
| PshBI | ATTAAT | 2 cut(s) | 429, 1107 |
| PsiI | TTATAA | 1 cut(s) | 645 |
| Psp124BI | GAGCTC | 2 cut(s) | 2190, 3467 |
| Psp6I | CCWGG | 7 cut(s) | 324, 367, 489, 2001, 3039, 3366, 3703 |
| PspFI | CCCAGC | 1 cut(s) | 3331 |
| PspGI | CCWGG | 7 cut(s) | 324, 367, 489, 2001, 3039, 3366, 3703 |
| PspN4I | GGNNCC | 6 cut(s) | 40, 69, 172, 2362, 3083, 3372 |
| PspOMI | GGGCCC | 1 cut(s) | 3081 |
| PspPI | GGNCC | 7 cut(s) | 67, 137, 170, 3081, 3082, 3568, 3583 |
| PstI | CTGCAG | 1 cut(s) | 163 |
| PstNI | CAGNNNCTG | 1 cut(s) | 295 |
| PsuI | RGATCY | 6 cut(s) | 330, 563, 674, 1993, 3193, 3370 |
| PvuII | CAGCTG | 1 cut(s) | 2479 |
| RruI | TCGCGA | 1 cut(s) | 405 |
| RsaI | GTAC | 3 cut(s) | 1342, 1891, 2086 |
| RsaNI | GTAC | 3 cut(s) | 1341, 1890, 2085 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1763, 1789, 2802 |
| SacI | GAGCTC | 2 cut(s) | 2190, 3467 |
| Sau96I | GGNCC | 7 cut(s) | 67, 137, 170, 3081, 3082, 3568, 3583 |
| ScaI | AGTACT | 1 cut(s) | 1891 |
| SchI | GAGTC | 7 cut(s) | 38, 1088, 1127, 1624, 1649, 3011, 3356 |
| ScrFI | CCNGG | 7 cut(s) | 326, 369, 491, 2003, 3041, 3368, 3705 |
| SduI | GDGCHC | 7 cut(s) | 939, 1317, 2068, 2132, 2190, 3085, 3467 |
| SfcI | CTRYAG | 2 cut(s) | 159, 2501 |
| SgrAI | CRCCGGYG | 1 cut(s) | 119 |
| SinI | GGWCC | 3 cut(s) | 137, 170, 3583 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1763, 1789, 2802 |
| SmlI | CTYRAG | 6 cut(s) | 558, 1157, 1589, 2345, 2693, 3350 |
| SmoI | CTYRAG | 6 cut(s) | 558, 1157, 1589, 2345, 2693, 3350 |
| SpeI | ACTAGT | 1 cut(s) | 1775 |
| SseBI | AGGCCT | 1 cut(s) | 2492 |
| SspI | AATATT | 5 cut(s) | 422, 1819, 2425, 2566, 3430 |
| SspMI | CTAG | 8 cut(s) | 390, 593, 1211, 1776, 2408, 2912, 3356, 3542 |
| SstI | GAGCTC | 2 cut(s) | 2190, 3467 |
| StuI | AGGCCT | 1 cut(s) | 2492 |
| StyD4I | CCNGG | 7 cut(s) | 324, 367, 489, 2001, 3039, 3366, 3703 |
| StyI | CCWWGG | 3 cut(s) | 63, 1292, 2196 |
| TaaI | ACNGT | 6 cut(s) | 437, 1627, 2321, 2557, 2851, 3603 |
| TaiI | ACGT | 2 cut(s) | 624, 3579 |
| TaqI | TCGA | 7 cut(s) | 1086, 1402, 2041, 2316, 2672, 3531, 3649 |
| TaqII | GACCGA | 1 cut(s) | 896 |
| TatI | WGTACW | 2 cut(s) | 1340, 1889 |
| TauI | GCSGC | 4 cut(s) | 2113, 2147, 2610, 3539 |
| TscAI | CASTG | 5 cut(s) | 457, 546, 2155, 2247, 2599 |
| TseFI | GTSAC | 3 cut(s) | 771, 3068, 3205 |
| TseI | GCWGC | 7 cut(s) | 1565, 1781, 1964, 2192, 2372, 2476, 3731 |
| Tsp45I | GTSAC | 3 cut(s) | 771, 3068, 3205 |
| TspGWI | ACGGA | 2 cut(s) | 839, 1585 |
| TspRI | CASTG | 5 cut(s) | 457, 546, 2155, 2247, 2599 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 295 |
| Vha464I | CTTAAG | 1 cut(s) | 1589 |
| VneI | GTGCAC | 1 cut(s) | 2064 |
| VpaK11BI | GGWCC | 3 cut(s) | 137, 170, 3583 |
| VspI | ATTAAT | 2 cut(s) | 429, 1107 |
| XapI | RAATTY | 7 cut(s) | 998, 1461, 2036, 2326, 2723, 2997, 3436 |
| XbaI | TCTAGA | 1 cut(s) | 3541 |
| XceI | RCATGY | 5 cut(s) | 760, 1052, 1341, 1649, 1794 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 829, 2624, 3417 |
| XmnI | GAANNNNTTC | 5 cut(s) | 363, 579, 1902, 2997, 3027 |
| XspI | CTAG | 8 cut(s) | 390, 593, 1211, 1776, 2408, 2912, 3356, 3542 |
| ZrmI | AGTACT | 1 cut(s) | 1891 |
| Zsp2I | ATGCAT | 1 cut(s) | 916 |