Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

47633101 .. 47641484

Gene Structure 8384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG357400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3723 bp

ATGGAATCGCCGCCGGACGAGTTCATGGCCGATGGCTCGGACTCCAGAAAGCCGAGGCTGTTCATCAGGGAAATGGTTTTGAGGAACTTCAAGTCTTATGCCGGGGAACAGCGCGTTGGTCCTTTCCACAAGAGCTTTTCTGCTGTTGTTGGACCTAATGGGAGTGGGAAGAGCAACGTTATAGATGCAATGCTCTTTGTATTCGGAAAACGAGCTAAGCAGATGCGACTTAACAGAGTTTCGGAGCTCATTCATAACTCCCCTAATTGCCAGAATATAGATAGTGCTGGAGTTTCTGTTCATTTCCAGGAGATCATGGATTTGGATGATGGGACGTTTGAAGCTGTTCCAGGAAGTGATTTTGTAATCACTAGGGTAGCGTATCGGGATAACTCCTCCAAGTATTACATCAATGATCGTTCAAGCAATTTCACTGAAGTTACCAAGAATCTGAAAGGGAAAGGAGTTGACCTGGACAACAATCGCTTCTTGATTCTTCAGGGTGAAGTTGAGCAGATCTCACTCATGAAGCCAAAAGCTCAAGGATCTCAGGATGAAGGCTTCCTCGAGTACCTTGAGGACATTATTGGGACCAGCAAATATGTCCAAAAAATTGATGAATCTTATCAAGAGCTAGAGTCCCTCAATGAGAAAAGATCTGGTGTTGTGCAAATGGTTAAGCTGGCAGAGAAAGAAAGAGATGGCTTGGAGGATGGGAAGAATGAAGCGGAAACTTACATGCTGAAAGAGTTGTCACTTCTAAAGTGGCAAGAGAGAGCCACAAAACTGGCTCATGAAGATACCTCTGCCAAAATGCTTGATCTACAGGAAAATATAACCAGCTTAGAAGAAAATCTGAACAACGATAGGGAGAAGATCCAGGAGCGTAATAATGCACTGAAGGAGCTTGAATCTGCGTACGATAAGCATATGAAACAACAAGAGGAATTATATATCGCCCTCAACAGATATAAGGATGAATTTAAGCATCTTGAAAAGGAGCGTGCAAAATATCTGGTGAATCTGCAATATGTGGAGCAGAAGATCAAGAAACTCGATGAAAAACTTGAAAAGGATTCATTAAAGATTAGTGACAGAGAGAGGGACTGTGAGAACTCGATTAGTCAGATCCCAGAACTTGAGAAAAGTATTCGCCAACTGCAAAAACTCTTGTTGGATGAAGAAAAAGTCCTGGAGGAAATTATTGAGGATTCCAAAGGGGATACCGAAACATATTGCTGTGAGCTTACAACAGTTCGTTCCAGATTAGAACCTTGGGAAAAACAACTGATTGAGCACCGGAAGAAATTTGATGTTGCATATACTGAACGCAAGCTTTTGGATGAAAAGCATCAAGCTGGTCGTGCCGCTTTTGAAGACGCTCGAAAGCAGATGGATGACATATGGGGACTGATACAAACCAAAACTGCAGACATTACAAAAATTCGGAGTGAGCTAGAAAAGAGCAAGTTCGAAAGGACGGAATACCGTAAAGCCGAACAGGAATACATCAAAGAACAAGAAGCTCTCATACCTTGTGAACAAGCTACAAGACAGAAGGTTGCAGAACTCAAGCATCTTCTGGATTCTGAAAAGAGTAGGGGAAGACTTTTAAAAGCAATTTTACATGCTAAGTTGTCCAACCGGATACCGGGAATACATGGCCGACTGGGCGATTTAGGTGCTATTGATGAGCAATATGATGTTGCCATATCAACGGCTTTCCCTGGACTTGATGATATTGTGGTGGAAACAACTGATGGAGCAATAGCTTGTGTTGAGCTACTCCGAAGGGAGAATCTTGGTGTTGCTAATTTCATGATAATGGAAAAGATCACTGATCGTTTACCAATGAGGAAGGAGAATGTAAGAACTCCAGAAGGAGTTCCATGCCTTTTTGATCTAGTTAGGGTTGAGGACCAGAGAATGAAACTTGCTTTCTTTGAAGCATTGAAGAATACCGTTGTAGCTAAAGATCTAGATCAGGCAGCACGTATTGCATATGGAGGAAACCCCAGATTTCGAGCGGTAACACTTGATGGTGCACTATTTGAAATATCTGGTACTATGACTGGTGGTGGAAGTAAGCCATGTGGTGGTAAGATTGGCCGATCTATATGTACTACTGTAGTGTCAGAAGAAGCTGTTACAGATGCCAGCAGGGAGCTTGCCAGCATGACAGATAAATTAAACCGTATCCGCCAACATATTGCTGACGCAGCAAAGAGATATCAAGCCTCTGAAGATGCAATTGCACACTGGGAGTTGGAATTAGCTAAAAGCCAGAAAGAGATTGACAGTTTGATTTCACAACATAGTTATCTTGAAATGCAAATTGGTTCCTTGGAGGCTGCATCACAGCTGAAGAAGGATGAGGTTGATCAGCTAAGAAAACTCGATAGTATCATTTCTGCTGAAGGAAATAAGATCGACGAACTCATCCAAGGATCTAAGCAGCTTAAGGAAAAGGTCCTGGAGCTTCAGCATAACATAGAAAATGCTGGTGGTGAAAGTTTAAAAGTACAGAAGTCAAAGGTCAATAAGATTAAGTCCGATATTGATGAAAAGAACACTGAACTCAACCACCACAAAGTCCAGATTGAGACTGGCCAGCAAACTATAAAGGAGTTGAGAAAAGCGATTCAAGATTCAAAGAAGAAGTATGAACGACATAACAAGGAGAACGAAACGTTATGTGCCAATTTCAAAGAAAAGGAAAAGAAGGCATCTCTAGTTCAAGAGAACTACGAGGAAACACAGAAGCTGATTGATGAACATAAAGCTGTGTTGGATAAAGCAAAATCTGAGTATTGCAATATGAAAAAGACTGTGTATGAATTGCGGGCATGGAAGGATAAAGCTGAGTTTGAACTAGAAGCTATGAAGAAGAAATACAAGGATCTGAAATTTGAGTGGAAGGCTTACAAGGACAAGCTTGATAAGTTGCAAACTGCCCTTATAAAGCATATGGATCAAATTCAGAAAGATTTAGTGGAATCTGAAAAGGTTCAAGCAACCTTGGCAGATGAACATCTTAATAGTTGTTGCGACCTTCAAAGGGCCATTGAAACGGCAGCACTTCTAGAAGCACAAATGAAAGAGATGAATCCAAATCTTGATTCAATCTCAGAGTACCAGAGAAAGGTCTCATTGTATAACGAAAGAGTGGAGGATCTGAGTATTATCACAAAACAGCGTGATGACATAAAGAGGCAGTATGATGAATTGAGAAAGAAGAGGTTGGATGACTTCATGGGAGGATTTAATGCAATATCCTTGAAGTTAAAAGAAATGTATCAGATGATCACGCTGGGAGGTGACGCAGAACTTGAGCTAGTCGACTCCTTGGATCCTTTTGCTGAAGGTGTTGTCTTCAGCGTTAGACCACCAAAGAAGAGTTGGAAGAATATTTCAAACTTATCTGGTGGTGAAAAGACATTGAGCTCATTGGCTCTTGTGTTTGCACTGCATCATTACAAGCCTACACCTCTTTATGTGATGGATGAAATTGATGCTGCCTTAGACTTTAAGAATGTTTCCATCGTCGGTCATTACGTGAAGGACCAGACAAAGGATGCACAATTCATAATCATAAGCCTTAGAAATAACATGTTTGAGTTAGCGGATCGACTTGTGGGGATATACAAAACTCATAATCGCACCAAGAGTATTGCCATTGACCCAAGGAGTTTTGTGATCTGCAATGAAGCTGCTCAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1240

Amino Acids

142.12

Weight (kDa)

5.8

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	21 - 1222	3e-66	RecF/RecN/SMC N terminal domain
SMC_hinge	PF06470	551 - 667	7.6e-21	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2960
AccB7I	CCANNNNNTGG	1 cut(s)	2096
AccBSI	CCGCTC	1 cut(s)	2027
AccI	GTMKAC	1 cut(s)	3339
AccII	CGCG	1 cut(s)	114
AciI	CCGC	7 cut(s)	11, 728, 1368, 2027, 2200, 2842, 3623
AclI	AACGTT	2 cut(s)	177, 2690
AcoI	YGGCCR	4 cut(s)	27, 1663, 2107, 2608
AcsI	RAATTY	5 cut(s)	980, 1307, 1443, 2906, 2976
AcuI	CTGAAG	9 cut(s)	456, 482, 920, 2262, 2384, 2436, 2465, 3358, 3381
AfaI	GTAC	6 cut(s)	572, 920, 2065, 2122, 2523, 3134
AfiI	CCNNNNNNNGG	5 cut(s)	1651, 2096, 3058, 3142, 3571
AflII	CTTAAG	1 cut(s)	2459
AflIII	ACRYGT	1 cut(s)	3609
AjnI	CCWGG	7 cut(s)	306, 349, 471, 879, 1191, 1726, 2472
AjuI	GAANNNNNNNTTGG	6 cut(s)	99, 131, 2319, 2351, 3103, 3135
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
Alw21I	GWGCWC	4 cut(s)	249, 1299, 2047, 3446
Alw26I	GTCTC	2 cut(s)	2597, 3151
Alw44I	GTGCAC	1 cut(s)	2043
AlwNI	CAGNNNCTG	1 cut(s)	2764
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	6 cut(s)	27, 1663, 2107, 2608, 3060, 3717
ApaLI	GTGCAC	1 cut(s)	2043
ApeKI	GCWGC	7 cut(s)	1988, 2219, 2351, 2455, 3074, 3515, 3710
ApoI	RAATTY	5 cut(s)	980, 1307, 1443, 2906, 2976
Asp700I	GAANNNNTTC	3 cut(s)	345, 1884, 3006
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	7 cut(s)	119, 152, 591, 1918, 2470, 3060, 3562
AsuC2I	CCSGG	2 cut(s)	103, 1653
AsuHPI	GGTGA	5 cut(s)	515, 1030, 2519, 3329, 3440
AsuII	TTCGAA	1 cut(s)	1473
AvaI	CYCGRG	1 cut(s)	566
AvaII	GGWCC	6 cut(s)	119, 152, 591, 1918, 2470, 3562
BaeGI	GKGCMC	1 cut(s)	2047
BalI	TGGCCA	1 cut(s)	2610
BamHI	GGATCC	1 cut(s)	3349
BanII	GRGCYC	2 cut(s)	249, 3446
BarI	GAAGNNNNNNTAC	4 cut(s)	1515, 1547, 2876, 2908
BbsI	GAAGAC	3 cut(s)	1383, 1612, 3364
Bbv12I	GWGCWC	4 cut(s)	249, 1299, 2047, 3446
BbvI	GCAGC	7 cut(s)	2000, 2231, 2338, 2467, 3086, 3502, 3697
BccI	CCATC	9 cut(s)	26, 323, 695, 707, 1387, 1754, 2033, 3493, 3548
BceAI	ACGGC	2 cut(s)	1734, 3087
BcgI	CGANNNNNNTGC	2 cut(s)	1664, 1698
BciT130I	CCWGG	7 cut(s)	308, 351, 473, 881, 1193, 1728, 2474
BciVI	GTATCC	3 cut(s)	1216, 1641, 2207
BclI	TGATCA	2 cut(s)	2380, 3303
BcnI	CCSGG	2 cut(s)	103, 1653
BcoDI	GTCTC	2 cut(s)	2597, 3151
BfaI	CTAG	9 cut(s)	372, 635, 1457, 1904, 1979, 2732, 2873, 3083, 3335
BfmI	CTRYAG	3 cut(s)	824, 1428, 2127
BfrI	CTTAAG	1 cut(s)	2459
BfuI	GTATCC	3 cut(s)	1216, 1641, 2207
BglI	GCCNNNNNGGC	1 cut(s)	1671
BglII	AGATCT	3 cut(s)	516, 656, 1975
BisI	GCNGC	9 cut(s)	11, 1368, 1989, 2220, 2352, 2456, 3075, 3516, 3711
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	9 cut(s)	12, 1369, 1990, 2221, 2353, 2457, 3076, 3517, 3712
Bme1390I	CCNGG	9 cut(s)	103, 308, 351, 473, 881, 1193, 1653, 1728, 2474
Bme18I	GGWCC	6 cut(s)	119, 152, 591, 1918, 2470, 3562
BmeT110I	CYCGRG	1 cut(s)	566
BmgT120I	GGNCC	7 cut(s)	119, 152, 591, 1918, 2470, 3060, 3562
BmiI	GGNNCC	3 cut(s)	592, 2341, 3351
BmrFI	CCNGG	9 cut(s)	103, 308, 351, 473, 881, 1193, 1653, 1728, 2474
BmrI	ACTGGG	2 cut(s)	1679, 2269
BmuI	ACTGGG	2 cut(s)	1679, 2269
BpiI	GAAGAC	3 cut(s)	1383, 1612, 3364
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	5 cut(s)	28, 309, 1214, 1860, 2495
Bpu10I	CCTNAGC	1 cut(s)	3714
Bpu1102I	GCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	1473
BpuEI	CTTGAG	5 cut(s)	525, 596, 1160, 1556, 3350
BpuMI	CCSGG	2 cut(s)	103, 1653
BsaAI	YACGTR	2 cut(s)	1994, 3556
BsaBI	GATNNNNATC	2 cut(s)	1980, 3030
BsaI	GGTCTC	1 cut(s)	3151
BsaJI	CCNNGG	9 cut(s)	53, 102, 1274, 1726, 2343, 2443, 3018, 3345, 3683
BsaWI	WCCGGW	2 cut(s)	1299, 1644
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	5 cut(s)	1651, 2096, 3058, 3142, 3571
Bse1I	ACTGG	5 cut(s)	792, 1674, 2077, 2264, 2611
Bse3DI	GCAATG	2 cut(s)	195, 3709
Bse8I	GATNNNNATC	2 cut(s)	1980, 3030
BseBI	CCWGG	7 cut(s)	308, 351, 473, 881, 1193, 1728, 2474
BseDI	CCNNGG	9 cut(s)	53, 102, 1274, 1726, 2343, 2443, 3018, 3345, 3683
BseJI	GATNNNNATC	2 cut(s)	1980, 3030
BseLI	CCNNNNNNNGG	5 cut(s)	1651, 2096, 3058, 3142, 3571
BseMI	GCAATG	2 cut(s)	195, 3709
BseMII	CTCAG	5 cut(s)	563, 2796, 2853, 3141, 3167
BseNI	ACTGG	5 cut(s)	792, 1674, 2077, 2264, 2611
BseRI	GAGGAG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	2047
BseXI	GCAGC	7 cut(s)	2000, 2231, 2338, 2467, 3086, 3502, 3697
BseYI	CCCAGC	1 cut(s)	3310
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	6 cut(s)	29, 1665, 2109, 2610, 3062, 3719
BsiHKAI	GWGCWC	4 cut(s)	249, 1299, 2047, 3446
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	5 cut(s)	14, 102, 1300, 1645, 1652
BsiWI	CGTACG	1 cut(s)	918
BslFI	GGGAC	5 cut(s)	346, 604, 625, 1118, 1422
BslI	CCNNNNNNNGG	5 cut(s)	1651, 2096, 3058, 3142, 3571
BsmAI	GTCTC	2 cut(s)	2597, 3151
BsmFI	GGGAC	5 cut(s)	346, 604, 625, 1118, 1422
BsnI	GGCC	6 cut(s)	29, 1665, 2109, 2610, 3062, 3719
Bso31I	GGTCTC	1 cut(s)	3151
BsoBI	CYCGRG	1 cut(s)	566
Bsp119I	TTCGAA	1 cut(s)	1473
Bsp1286I	GDGCHC	4 cut(s)	249, 1299, 2047, 3446
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	7 cut(s)	11, 728, 1368, 2027, 2200, 2842, 3623
BspANI	GGCC	6 cut(s)	29, 1665, 2109, 2610, 3062, 3719
BspCNI	CTCAG	5 cut(s)	562, 2797, 2854, 3140, 3168
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	3 cut(s)	525, 793, 1818
BspLI	GGNNCC	3 cut(s)	592, 2341, 3351
BspMAI	CTGCAG	1 cut(s)	1432
BspQI	GCTCTTC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	1473
BspTI	CTTAAG	1 cut(s)	2459
BspTNI	GGTCTC	1 cut(s)	3151
BsrBI	CCGCTC	1 cut(s)	2027
BsrDI	GCAATG	2 cut(s)	195, 3709
BsrI	ACTGG	5 cut(s)	792, 1674, 2077, 2264, 2611
BssECI	CCNNGG	9 cut(s)	53, 102, 1274, 1726, 2343, 2443, 3018, 3345, 3683
BssT1I	CCWWGG	6 cut(s)	1274, 2343, 2443, 3018, 3345, 3683
Bst2UI	CCWGG	7 cut(s)	308, 351, 473, 881, 1193, 1728, 2474
Bst4CI	ACNGT	8 cut(s)	1109, 1255, 1490, 1963, 2128, 2195, 2300, 2830
Bst6I	CTCTTC	3 cut(s)	164, 3230, 3389
BstAFI	CTTAAG	1 cut(s)	2459
BstAPI	GCANNNNNTGC	1 cut(s)	1997
BstBAI	YACGTR	2 cut(s)	1994, 3556
BstBI	TTCGAA	1 cut(s)	1473
BstC8I	GCNNGC	8 cut(s)	684, 1005, 1334, 2158, 2169, 2173, 2612, 2844
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	114
BstMAI	GTCTC	2 cut(s)	2597, 3151
BstMWI	GCNNNNNNNGC	6 cut(s)	1364, 1671, 1997, 2219, 3020, 3716
BstNI	CCWGG	7 cut(s)	308, 351, 473, 881, 1193, 1728, 2474
BstNSI	RCATGY	3 cut(s)	742, 1631, 3613
BstSCI	CCNGG	9 cut(s)	101, 306, 349, 471, 879, 1191, 1651, 1726, 2472
BstSFI	CTRYAG	3 cut(s)	824, 1428, 2127
BstSLI	GKGCMC	1 cut(s)	2047
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	7 cut(s)	2000, 2231, 2338, 2467, 3086, 3502, 3697
BstV2I	GAAGAC	3 cut(s)	1383, 1612, 3364
BstXI	CCANNNNNNTGG	1 cut(s)	787
BsuI	GTATCC	3 cut(s)	1216, 1641, 2207
BsuRI	GGCC	6 cut(s)	29, 1665, 2109, 2610, 3062, 3719
BtsI	GCAGTG	1 cut(s)	3464
BtsIMutI	CAGTG	6 cut(s)	432, 896, 1836, 2257, 2571, 3464
Cac8I	GCNNGC	8 cut(s)	684, 1005, 1334, 2158, 2169, 2173, 2612, 2844
CaiI	CAGNNNCTG	1 cut(s)	2764
CciI	TCATGA	3 cut(s)	525, 793, 1818
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	7 cut(s)	119, 152, 591, 1918, 2470, 3060, 3562
CseI	GACGC	3 cut(s)	1388, 2225, 3329
Csp6I	GTAC	6 cut(s)	571, 919, 2064, 2121, 2522, 3133
CviQI	GTAC	6 cut(s)	571, 919, 2064, 2121, 2522, 3133
DraI	TTTAAA	2 cut(s)	1614, 2517
EaeI	YGGCCR	4 cut(s)	27, 1663, 2107, 2608
Eam1104I	CTCTTC	3 cut(s)	164, 3230, 3389
EarI	CTCTTC	3 cut(s)	164, 3230, 3389
EciI	GGCGGA	1 cut(s)	2189
Ecl136II	GAGCTC	2 cut(s)	247, 3444
Eco130I	CCWWGG	6 cut(s)	1274, 2343, 2443, 3018, 3345, 3683
Eco147I	AGGCCT	1 cut(s)	3719
Eco24I	GRGCYC	2 cut(s)	249, 3446
Eco31I	GGTCTC	1 cut(s)	3151
Eco32I	GATATC	1 cut(s)	2231
Eco47I	GGWCC	6 cut(s)	119, 152, 591, 1918, 2470, 3562
Eco53kI	GAGCTC	2 cut(s)	247, 3444
Eco57I	CTGAAG	9 cut(s)	456, 482, 920, 2262, 2384, 2436, 2465, 3358, 3381
Eco88I	CYCGRG	1 cut(s)	566
EcoICRI	GAGCTC	2 cut(s)	247, 3444
EcoO109I	RGGNCCY	1 cut(s)	2470
EcoRII	CCWGG	7 cut(s)	306, 349, 471, 879, 1191, 1726, 2472
EcoRV	GATATC	1 cut(s)	2231
EcoT14I	CCWWGG	6 cut(s)	1274, 2343, 2443, 3018, 3345, 3683
EcoT38I	GRGCYC	2 cut(s)	249, 3446
ErhI	CCWWGG	6 cut(s)	1274, 2343, 2443, 3018, 3345, 3683
FaqI	GGGAC	5 cut(s)	346, 604, 625, 1118, 1422
FauI	CCCGC	1 cut(s)	2835
FauNDI	CATATG	4 cut(s)	930, 1403, 2002, 2967
FbaI	TGATCA	2 cut(s)	2380, 3303
FblI	GTMKAC	1 cut(s)	3339
Fnu4HI	GCNGC	9 cut(s)	11, 1368, 1989, 2220, 2352, 2456, 3075, 3516, 3711
FriOI	GRGCYC	2 cut(s)	249, 3446
Fsp4HI	GCNGC	9 cut(s)	11, 1368, 1989, 2220, 2352, 2456, 3075, 3516, 3711
FspBI	CTAG	9 cut(s)	372, 635, 1457, 1904, 1979, 2732, 2873, 3083, 3335
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	9 cut(s)	11, 1368, 1989, 2220, 2352, 2456, 3075, 3516, 3711
GsaI	CCCAGC	1 cut(s)	3314
GsuI	CTGGAG	5 cut(s)	28, 309, 1214, 1860, 2495
HaeIII	GGCC	6 cut(s)	29, 1665, 2109, 2610, 3062, 3719
HapII	CCGG	5 cut(s)	14, 102, 1300, 1645, 1652
HgaI	GACGC	3 cut(s)	1388, 2225, 3329
HhaI	GCGC	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	469, 3340
HindII	GTYRAC	2 cut(s)	469, 3340
HindIII	AAGCTT	2 cut(s)	1334, 2933
HpaII	CCGG	5 cut(s)	14, 102, 1300, 1645, 1652
HphI	GGTGA	5 cut(s)	515, 1030, 2519, 3329, 3440
Hpy166II	GTNNAC	5 cut(s)	469, 1541, 1847, 2045, 3340
Hpy8I	GTNNAC	5 cut(s)	469, 1541, 1847, 2045, 3340
Hpy99I	CGWCG	2 cut(s)	2435, 3548
HpyCH4III	ACNGT	8 cut(s)	1109, 1255, 1490, 1963, 2128, 2195, 2300, 2830
HpyCH4IV	ACGT	5 cut(s)	177, 335, 1993, 2690, 3555
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1364, 1671, 1997, 2219, 3020, 3716
HpySE526I	ACGT	5 cut(s)	177, 335, 1993, 2690, 3555
HspAI	GCGC	1 cut(s)	112
Ksp22I	TGATCA	2 cut(s)	2380, 3303
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	8 cut(s)	244, 883, 904, 1000, 1036, 1763, 2164, 2476
Lsp1109I	GCAGC	7 cut(s)	2000, 2231, 2338, 2467, 3086, 3502, 3697
MaeI	CTAG	9 cut(s)	372, 635, 1457, 1904, 1979, 2732, 2873, 3083, 3335
MaeII	ACGT	5 cut(s)	177, 335, 1993, 2690, 3555
MaeIII	GTNAC	6 cut(s)	439, 753, 1091, 2029, 2146, 3317
MbiI	CCGCTC	1 cut(s)	2027
MfeI	CAATTG	1 cut(s)	2250
MhlI	GDGCHC	4 cut(s)	249, 1299, 2047, 3446
MlsI	TGGCCA	1 cut(s)	2610
MluNI	TGGCCA	1 cut(s)	2610
MlyI	GAGTC	3 cut(s)	35, 647, 3335
MmeI	TCCRAC	7 cut(s)	130, 1155, 1665, 2247, 2769, 3222, 3380
Mox20I	TGGCCA	1 cut(s)	2610
MroXI	GAANNNNTTC	3 cut(s)	345, 1884, 3006
MscI	TGGCCA	1 cut(s)	2610
MslI	CAYNNNNRTG	1 cut(s)	1823
Msp20I	TGGCCA	1 cut(s)	2610
MspA1I	CMGCKG	1 cut(s)	2362
MspCI	CTTAAG	1 cut(s)	2459
MspI	CCGG	5 cut(s)	14, 102, 1300, 1645, 1652
MspR9I	CCNGG	9 cut(s)	103, 308, 351, 473, 881, 1193, 1653, 1728, 2474
MunI	CAATTG	1 cut(s)	2250
MvaI	CCWGG	7 cut(s)	308, 351, 473, 881, 1193, 1728, 2474
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	6 cut(s)	1364, 1671, 1997, 2219, 3020, 3716
NciI	CCSGG	2 cut(s)	103, 1653
NdeI	CATATG	4 cut(s)	930, 1403, 2002, 2967
NlaIV	GGNNCC	3 cut(s)	592, 2341, 3351
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	3 cut(s)	753, 1091, 3317
NspI	RCATGY	3 cut(s)	742, 1631, 3613
NspV	TTCGAA	1 cut(s)	1473
PaeR7I	CTCGAG	1 cut(s)	566
PagI	TCATGA	3 cut(s)	525, 793, 1818
PceI	AGGCCT	1 cut(s)	3719
PciI	ACATGT	1 cut(s)	3609
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	3552
PdmI	GAANNNNTTC	3 cut(s)	345, 1884, 3006
Pfl23II	CGTACG	1 cut(s)	918
PflMI	CCANNNNNTGG	1 cut(s)	2096
PfoI	TCCNGGA	5 cut(s)	306, 349, 879, 1191, 2472
PkrI	GCNGC	9 cut(s)	12, 1369, 1990, 2221, 2353, 2457, 3076, 3517, 3712
PleI	GAGTC	3 cut(s)	35, 646, 3335
PpsI	GAGTC	3 cut(s)	35, 646, 3335
Ppu21I	YACGTR	2 cut(s)	1994, 3556
PpuMI	RGGWCCY	1 cut(s)	2470
PscI	ACATGT	1 cut(s)	3609
PsiI	TTATAA	1 cut(s)	2960
Psp124BI	GAGCTC	2 cut(s)	249, 3446
Psp1406I	AACGTT	2 cut(s)	177, 2690
Psp5II	RGGWCCY	1 cut(s)	2470
Psp6I	CCWGG	7 cut(s)	306, 349, 471, 879, 1191, 1726, 2472
PspFI	CCCAGC	1 cut(s)	3310
PspGI	CCWGG	7 cut(s)	306, 349, 471, 879, 1191, 1726, 2472
PspLI	CGTACG	1 cut(s)	918
PspN4I	GGNNCC	3 cut(s)	592, 2341, 3351
PspPI	GGNCC	7 cut(s)	119, 152, 591, 1918, 2470, 3060, 3562
PspPPI	RGGWCCY	1 cut(s)	2470
PspXI	VCTCGAGB	1 cut(s)	566
PstI	CTGCAG	1 cut(s)	1432
PstNI	CAGNNNCTG	1 cut(s)	2764
PvuII	CAGCTG	1 cut(s)	2362
RsaI	GTAC	6 cut(s)	572, 920, 2065, 2122, 2523, 3134
RsaNI	GTAC	6 cut(s)	571, 919, 2064, 2121, 2522, 3133
RseI	CAYNNNNRTG	1 cut(s)	1823
SacI	GAGCTC	2 cut(s)	249, 3446
SalI	GTCGAC	1 cut(s)	3338
SapI	GCTCTTC	1 cut(s)	164
SatI	GCNGC	9 cut(s)	11, 1368, 1989, 2220, 2352, 2456, 3075, 3516, 3711
Sau96I	GGNCC	7 cut(s)	119, 152, 591, 1918, 2470, 3060, 3562
SchI	GAGTC	3 cut(s)	35, 647, 3335
ScrFI	CCNGG	9 cut(s)	103, 308, 351, 473, 881, 1193, 1653, 1728, 2474
SduI	GDGCHC	4 cut(s)	249, 1299, 2047, 3446
SfcI	CTRYAG	3 cut(s)	824, 1428, 2127
Sfr274I	CTCGAG	1 cut(s)	566
SfuI	TTCGAA	1 cut(s)	1473
SinI	GGWCC	6 cut(s)	119, 152, 591, 1918, 2470, 3562
SlaI	CTCGAG	1 cut(s)	566
SmiMI	CAYNNNNRTG	1 cut(s)	1823
SmlI	CTYRAG	7 cut(s)	540, 566, 575, 1139, 1571, 2459, 3329
SmoI	CTYRAG	7 cut(s)	540, 566, 575, 1139, 1571, 2459, 3329
SseBI	AGGCCT	1 cut(s)	3719
SsiI	CCGC	7 cut(s)	11, 728, 1368, 2027, 2200, 2842, 3623
SspI	AATATT	1 cut(s)	3409
SspMI	CTAG	9 cut(s)	372, 635, 1457, 1904, 1979, 2732, 2873, 3083, 3335
SstI	GAGCTC	2 cut(s)	249, 3446
StuI	AGGCCT	1 cut(s)	3719
StyD4I	CCNGG	9 cut(s)	101, 306, 349, 471, 879, 1191, 1651, 1726, 2472
StyI	CCWWGG	6 cut(s)	1274, 2343, 2443, 3018, 3345, 3683
TaaI	ACNGT	8 cut(s)	1109, 1255, 1490, 1963, 2128, 2195, 2300, 2830
TaiI	ACGT	5 cut(s)	180, 338, 1996, 2693, 3558
TaqII	GACCGA	1 cut(s)	3536
TatI	WGTACW	2 cut(s)	2120, 2521
TauI	GCSGC	2 cut(s)	13, 1370
TscAI	CASTG	6 cut(s)	439, 903, 1843, 2264, 2578, 3471
TseFI	GTSAC	3 cut(s)	753, 1091, 3317
TseI	GCWGC	7 cut(s)	1988, 2219, 2351, 2455, 3074, 3515, 3710
Tsp45I	GTSAC	3 cut(s)	753, 1091, 3317
TspGWI	ACGGA	1 cut(s)	1496
TspRI	CASTG	6 cut(s)	439, 903, 1843, 2264, 2578, 3471
Van91I	CCANNNNNTGG	1 cut(s)	2096
Vha464I	CTTAAG	1 cut(s)	2459
VneI	GTGCAC	1 cut(s)	2043
VpaK11BI	GGWCC	6 cut(s)	119, 152, 591, 1918, 2470, 3562
XapI	RAATTY	5 cut(s)	980, 1307, 1443, 2906, 2976
XbaI	TCTAGA	2 cut(s)	1978, 3082
XceI	RCATGY	3 cut(s)	742, 1631, 3613
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2603, 3396
XhoI	CTCGAG	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	3339
XmnI	GAANNNNTTC	3 cut(s)	345, 1884, 3006
XspI	CTAG	9 cut(s)	372, 635, 1457, 1904, 1979, 2732, 2873, 3083, 3335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.