Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002826.1

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

84478 .. 85537

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002826.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggaatcgccgccggacgagttcatggccgatggctcggactccagaaagccgaggctgttcatcagggaaatggttttgaggaacttcaagtcttatgccggggaacagcgcgttggtcctttccacaaggatgatgggacgtttgaagctgttccaggaagtgattttgtaatcactagggtagcgtatcgggataactcctccaggtattacatcaatgaccgttcaagcaattttactcaagttaccaagaaactgaaagggaaaggagttgacctggacaacaatcgcttcttgattcttcagggtgaagttgagcagatctcactcatgaagccaaaagctcaaggatctcaggatgaaggcttcctcgagtaccttgaggacattattgggaccagcaaatatgtccaaaaaattgatgaatcttatcaagagtatgctctagttcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

152

Amino Acids

17.48

Weight (kDa)

5.27

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	91, 149, 231
AjnI	CCWGG	3 cut(s)	157, 206, 279
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	2 cut(s)	152, 347
AluI	AGCT	2 cut(s)	152, 347
AlwI	GGATC	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	119, 399
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	119, 399
BccI	CCATC	2 cut(s)	26, 131
BciT130I	CCWGG	3 cut(s)	159, 208, 281
BcnI	CCSGG	1 cut(s)	103
BfaI	CTAG	2 cut(s)	180, 449
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	4 cut(s)	103, 159, 208, 281
Bme18I	GGWCC	2 cut(s)	119, 399
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	119, 399
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	4 cut(s)	103, 159, 208, 281
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	2 cut(s)	28, 190
BpuEI	CTTGAG	3 cut(s)	228, 333, 404
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	53, 102
BseBI	CCWGG	3 cut(s)	159, 208, 281
BseDI	CCNNGG	2 cut(s)	53, 102
BseGI	GGATG	2 cut(s)	139, 367
BseMII	CTCAG	1 cut(s)	371
BseRI	GAGGAG	1 cut(s)	193
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	14, 102
BslFI	GGGAC	2 cut(s)	154, 412
BsmFI	GGGAC	2 cut(s)	154, 412
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	324, 353
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	53, 102
BssMI	GATC	2 cut(s)	324, 353
Bst2UI	CCWGG	3 cut(s)	159, 208, 281
Bst4CI	ACNGT	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	139, 367
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	2 cut(s)	327, 356
BstMBI	GATC	2 cut(s)	324, 353
BstNI	CCWGG	3 cut(s)	159, 208, 281
BstSCI	CCNGG	4 cut(s)	101, 157, 206, 279
BstUI	CGCG	1 cut(s)	114
BstX2I	RGATCY	2 cut(s)	324, 353
BstYI	RGATCY	2 cut(s)	324, 353
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	139, 367
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	119, 399
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	2 cut(s)	25, 334
CviJI	RGCY	8 cut(s)	29, 36, 52, 58, 152, 340, 347, 369
CviKI_1	RGCY	8 cut(s)	29, 36, 52, 58, 152, 340, 347, 369
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	326, 355
DpnII	GATC	2 cut(s)	324, 353
EaeI	YGGCCR	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	119, 399
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	374
EcoRII	CCWGG	3 cut(s)	157, 206, 279
FaeI	CATG	2 cut(s)	28, 337
FaiI	YATR	5 cut(s)	26, 99, 335, 411, 444
FaqI	GGGAC	2 cut(s)	154, 412
FatI	CATG	2 cut(s)	24, 333
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	2 cut(s)	146, 374
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	2 cut(s)	180, 449
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	1 cut(s)	11
GsuI	CTGGAG	2 cut(s)	28, 190
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	14, 102
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	28, 337
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	4 cut(s)	5, 41, 301, 428
HpaII	CCGG	2 cut(s)	14, 102
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	6 cut(s)	45, 194, 298, 334, 359, 437
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	28, 337
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	324, 353
MaeI	CTAG	2 cut(s)	180, 449
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	326, 355
MboI	GATC	2 cut(s)	324, 353
MboII	GAAGA	1 cut(s)	296
MflI	RGATCY	2 cut(s)	324, 353
MluCI	AATT	2 cut(s)	235, 420
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	5 cut(s)	48, 75, 214, 379, 383
MroXI	GAANNNNTTC	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	2 cut(s)	14, 102
MspR9I	CCNGG	4 cut(s)	103, 159, 208, 281
MvaI	CCWGG	3 cut(s)	159, 208, 281
MvnI	CGCG	1 cut(s)	114
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	324, 353
NlaIII	CATG	2 cut(s)	28, 337
NlaIV	GGNNCC	1 cut(s)	400
NmeAIII	GCCGAG	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	374
PagI	TCATGA	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	3 cut(s)	5, 301, 428
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp6I	CCWGG	3 cut(s)	157, 206, 279
PspGI	CCWGG	3 cut(s)	157, 206, 279
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	2 cut(s)	119, 399
PspXI	VCTCGAGB	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	324, 353
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	132
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	2 cut(s)	324, 353
Sau96I	GGNCC	2 cut(s)	119, 399
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	4 cut(s)	103, 159, 208, 281
SetI	ASST	6 cut(s)	146, 154, 212, 282, 349, 384
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	2 cut(s)	119, 399
SlaI	CTCGAG	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	4 cut(s)	243, 348, 374, 383
SmoI	CTYRAG	4 cut(s)	243, 348, 374, 383
Sse9I	AATT	2 cut(s)	235, 420
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	180, 449
StyD4I	CCNGG	4 cut(s)	101, 157, 206, 279
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	1 cut(s)	375
TasI	AATT	2 cut(s)	235, 420
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	3 cut(s)	5, 301, 428
TspDTI	ATGAA	6 cut(s)	13, 52, 350, 378, 441, 443
VpaK11BI	GGWCC	2 cut(s)	119, 399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XhoI	CTCGAG	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	2 cut(s)	180, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.