Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

6291823 .. 6293925

Gene Structure 2103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAGGTAAAAAGTTTGTTGCCAACTTCTGTCAGGGCCTTCTTCTCATCCTTTGGGACATTAGAGATCAACCGACTAAGATCACAATACAAGAACATCGATTTGAGGCGTATAGTCCCACGAGATGATGGAGAATTGAAAGTTGTTCCAGGAAGTGATTTTGTAATTACAAGAATAGCATATCGGAATAACACCTCCAAATATTACATCAATGACCATGCAAGTAATTTCACTCTAGTTACCAAGAAACTGGAAGGGAAAGGAGTCGACTTAGACAACAATCCTTTTTTGATTCTTCAGGAAAAACGAAATGCTAGCTGCGCAAAACGAAATGCTGGATCTTTCCATCAACAAAGAGAAACGCGAAACGGAGGTCCATGCCACGTGGCAGGAGGAGCAGGGGAGGGAAGCCGTTCGTCGGCTCAGGGAGGAGGAATTGGCCAAGAAGACAGAGGTGCTTCAAGCCAATGCCCAAGCCATGGCGGCTCACTCTTTGGTTGTGCAGCAGGCAATGGTGGCATATATAGGCCTTATCTCGATCTCCGACAAATAGGTATGTGTCAAGGACTGAAGGAGGAGGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

196

Amino Acids

21.26

Weight (kDa)

9.16

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	364
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	281
AcvI	CACGTG	1 cut(s)	385
AfiI	CCNNNNNNNGG	2 cut(s)	418, 479
AgsI	TTSAA	2 cut(s)	139, 462
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
AlwI	GGATC	1 cut(s)	346
AoxI	GGCC	3 cut(s)	36, 439, 527
ApeKI	GCWGC	2 cut(s)	318, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
Asp700I	GAANNNNTTC	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	36, 374
AsuNHI	GCTAGC	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	374
BalI	TGGCCA	1 cut(s)	441
BauI	CACGAG	1 cut(s)	120
BbrPI	CACGTG	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	305, 515
BccI	CCATC	2 cut(s)	122, 354
BceAI	ACGGC	1 cut(s)	396
BciT130I	CCWGG	1 cut(s)	150
BfaI	CTAG	2 cut(s)	236, 315
BglI	GCCNNNNNGGC	1 cut(s)	483
BisI	GCNGC	3 cut(s)	319, 484, 504
BlsI	GCNGC	3 cut(s)	320, 485, 505
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	36, 374
BmrFI	CCNGG	1 cut(s)	150
BmtI	GCTAGC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	453
Bpu10I	CCTNAGC	1 cut(s)	423
Bsa29I	ATCGAT	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 479
Bse1I	ACTGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	418, 479
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	2 cut(s)	408, 444
BseXI	GCAGC	2 cut(s)	305, 515
BsgI	GTGCAG	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	364
BshFI	GGCC	3 cut(s)	38, 441, 529
BshVI	ATCGAT	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	70, 101
BslI	CCNNNNNNNGG	2 cut(s)	418, 479
BsmFI	GGGAC	2 cut(s)	70, 101
BsnI	GGCC	3 cut(s)	38, 441, 529
Bsp143I	GATC	4 cut(s)	66, 80, 338, 538
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	1 cut(s)	483
BspANI	GGCC	3 cut(s)	38, 441, 529
BspCNI	CTCAG	1 cut(s)	436
BspDI	ATCGAT	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	364
BspOI	GCTAGC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	4 cut(s)	66, 80, 338, 538
BssSI	CACGAG	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	478
Bst2BI	CACGAG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	2 cut(s)	316, 508
BstDEI	CTNAG	3 cut(s)	77, 271, 423
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	4 cut(s)	69, 83, 341, 541
BstMBI	GATC	4 cut(s)	66, 80, 338, 538
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 395, 483, 516
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstUI	CGCG	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	305, 515
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	338
BstXI	CCANNNNNNTGG	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	338
Bsu15I	ATCGAT	1 cut(s)	99
BsuRI	GGCC	3 cut(s)	38, 441, 529
BsuTUI	ATCGAT	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	316, 508
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	2 cut(s)	36, 374
ClaI	ATCGAT	1 cut(s)	99
CviAII	CATG	3 cut(s)	218, 378, 479
CviJI	RGCY	9 cut(s)	38, 318, 411, 422, 441, 465, 477, 486, 529
CviKI_1	RGCY	9 cut(s)	38, 318, 411, 422, 441, 465, 477, 486, 529
DdeI	CTNAG	3 cut(s)	77, 271, 423
DpnI	GATC	4 cut(s)	68, 82, 340, 540
DpnII	GATC	4 cut(s)	66, 80, 338, 538
EaeI	YGGCCR	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	478
Eco147I	AGGCCT	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	281
Eco72I	CACGTG	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	3 cut(s)	221, 381, 482
FaiI	YATR	9 cut(s)	113, 181, 219, 379, 480, 521, 523, 525, 557
FaqI	GGGAC	2 cut(s)	70, 101
FatI	CATG	3 cut(s)	217, 377, 478
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	319, 484, 504
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	3 cut(s)	319, 484, 504
FspBI	CTAG	2 cut(s)	236, 315
FspI	TGCGCA	1 cut(s)	322
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	3 cut(s)	319, 484, 504
HaeIII	GGCC	3 cut(s)	38, 441, 529
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	3 cut(s)	221, 381, 482
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	2 cut(s)	264, 292
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	186, 545
Hpy188III	TCNNGA	2 cut(s)	299, 536
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	3 cut(s)	49, 248, 565
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	2 cut(s)	221, 503
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 395, 483, 516
HpyF3I	CTNAG	3 cut(s)	77, 271, 423
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	221, 381, 482
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	4 cut(s)	66, 80, 338, 538
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	2 cut(s)	305, 515
MaeI	CTAG	2 cut(s)	236, 315
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	4 cut(s)	68, 82, 340, 540
MboI	GATC	4 cut(s)	66, 80, 338, 538
MboII	GAAGA	3 cut(s)	34, 287, 458
MflI	RGATCY	1 cut(s)	338
MlsI	TGGCCA	1 cut(s)	441
MluCI	AATT	4 cut(s)	134, 165, 226, 435
MluNI	TGGCCA	1 cut(s)	441
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	568
Mox20I	TGGCCA	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	441
Msp20I	TGGCCA	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	364
MwoI	GCNNNNNNNGC	4 cut(s)	320, 395, 483, 516
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	4 cut(s)	66, 80, 338, 538
NheI	GCTAGC	1 cut(s)	314
NlaIII	CATG	3 cut(s)	221, 381, 482
NsbI	TGCGCA	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	479
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	320, 485, 505
PleI	GAGTC	1 cut(s)	272
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	148
PspCI	CACGTG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	36, 374
PsuI	RGATCY	1 cut(s)	338
SalI	GTCGAC	1 cut(s)	266
SatI	GCNGC	3 cut(s)	319, 484, 504
Sau3AI	GATC	4 cut(s)	66, 80, 338, 538
Sau96I	GGNCC	2 cut(s)	36, 374
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	7 cut(s)	9, 197, 320, 376, 387, 457, 556
SinI	GGWCC	1 cut(s)	374
Sse9I	AATT	4 cut(s)	134, 165, 226, 435
SseBI	AGGCCT	1 cut(s)	529
SsiI	CCGC	1 cut(s)	483
SspI	AATATT	1 cut(s)	203
SspMI	CTAG	2 cut(s)	236, 315
StuI	AGGCCT	1 cut(s)	529
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	478
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	3 cut(s)	99, 267, 537
TasI	AATT	4 cut(s)	134, 165, 226, 435
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	318, 503
TspGWI	ACGGA	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	412
XspI	CTAG	2 cut(s)	236, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.