Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

47597135 .. 47602946

Gene Structure 5812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG356900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGATTTGGATGATGGGACGTTTGAAGCTGTTCCAGGAAGTGATTTTGTAATCACTAGGGTAGTGTATCGGGATAACTCCTCCAAGTATTACATCAATGATCGTTCAAGCAATTTCACTGAAGTTACCAAGAATCTGAAAGGGAAAGGAGTTGACCTGGACAACAATCGCTTCTTGATTCTTCAGGGTGAAGTTGAGCAGATCTCACTCATGAAGCCAAAAGCTCAAGGATCTCAGGATGAAGGCTTCCTCGAGTACCTTGAGGACATTATTGGGACCAGCAAATATGTCCAAAAAATTGATGAATCTTATCAAGAGCTAGAGTCCCTCAATGAGAAAAGATCTGGTGTCGTGCAAATGGTTAAGCTGGCAGAGAAAGAAAGAGATGGCTTGGAGGAAAATATAACTAGCTTAGAAGAAAATCTGAACAACGATAGGGAGAAGATCCAGGGGCGTAATACTGCACTGAAGGAGCTTGAATCTGCGTACGATAAGCATATGAAACAACAAGAGGAATTATATATCGCCCTCAACAGATATAAGGATGAATTTAAGCATCTTGAAAAGGAGCGTGCAAAATATCTGGTGAATCTGCAATATGTGGAGCAGAAGATCAAGAGACTCGATGAAAAACTTGAAAAGGATTCATTAAAGATTAAAAAAGTCCTGGAGGAAATTATTGAGGATTCCAAAGGGGATACCGAAACATATTGCTGTGAGCTTACAACAGTTCGTTCCAGATTAGAACCTTGGGAAAAACAACTGATTGAGCACCGGAAGAAATTTGATGTTGCATATACTGAACGCAAGCATGAAAAGCATCAAGCTGGTCGTGCAGCTTTTGAAGACGCTCGAAAGCAGATGGATGATATATGGGGACTGATGCAAACAAAAACTGCAGACATTACAAAAATTCGGAGTGAGCTAGAAAAGAGCAAGTTGGAAAGGACAGAATGCCGTAAAGCCGAACAGGAATACATCAAAGAACAAGAAGCTCTCATACCTTGTGAACAAGCTGCAAGACAGAAGGTTGCAGAACTCAAGCATCTTCTGGATTCTGAAAAGAGTAGGGGAAGACTTTTAAAAGCAATTTTACATGCTAAGTTGTCCAACCGGATACCGGGAATACATGGCCGACTGGGCGATTTAGGTGCTATTGATGAGCAATATGATGTTGCCATATCAACGGCTTGCCCTGGACTCGATAATATTGTGGTGGAAACAACAGATGGAGCAATAGCTTGTGTTGAGCTACTCCGAAGGGAGAATCTTGGTGTTGCTAATTTCATGATAATGGCCCAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

435

Amino Acids

50.23

Weight (kDa)

5.4

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_hinge	PF06470	374 - 432	8e-11	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	238, 439
AcoI	YGGCCR	1 cut(s)	1132
AcsI	RAATTY	3 cut(s)	548, 782, 912
AcuI	CTGAAG	3 cut(s)	141, 167, 488
AfaI	GTAC	2 cut(s)	257, 488
AfiI	CCNNNNNNNGG	1 cut(s)	1120
AgsI	TTSAA	6 cut(s)	26, 108, 479, 563, 638, 845
AjnI	CCWGG	5 cut(s)	34, 156, 447, 666, 1195
Alw21I	GWGCWC	1 cut(s)	774
Alw26I	GTCTC	1 cut(s)	613
AlwI	GGATC	2 cut(s)	238, 439
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	2 cut(s)	1132, 1296
ApeKI	GCWGC	2 cut(s)	836, 1016
ApoI	RAATTY	3 cut(s)	548, 782, 912
Asp700I	GAANNNNTTC	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	276, 1297
AsuC2I	CCSGG	1 cut(s)	1122
AsuHPI	GGTGA	2 cut(s)	200, 598
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	276
BarI	GAAGNNNNNNTAC	2 cut(s)	984, 1016
BbsI	GAAGAC	2 cut(s)	852, 1081
Bbv12I	GWGCWC	1 cut(s)	774
BbvI	GCAGC	2 cut(s)	848, 1003
BccI	CCATC	4 cut(s)	8, 380, 856, 1223
BceAI	ACGGC	2 cut(s)	942, 1203
BcgI	CGANNNNNNTGC	2 cut(s)	1133, 1167
BciT130I	CCWGG	5 cut(s)	36, 158, 449, 668, 1197
BciVI	GTATCC	2 cut(s)	691, 1110
BcnI	CCSGG	1 cut(s)	1122
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	4 cut(s)	57, 320, 408, 926
BfmI	CTRYAG	1 cut(s)	897
BfuI	GTATCC	2 cut(s)	691, 1110
BglI	GCCNNNNNGGC	1 cut(s)	1140
BglII	AGATCT	2 cut(s)	201, 341
BisI	GCNGC	2 cut(s)	837, 1017
BlsI	GCNGC	2 cut(s)	838, 1018
Bme1390I	CCNGG	6 cut(s)	36, 158, 449, 668, 1122, 1197
Bme18I	GGWCC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	276, 1297
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	6 cut(s)	36, 158, 449, 668, 1122, 1197
BmrI	ACTGGG	1 cut(s)	1148
BmsI	GCATC	4 cut(s)	565, 829, 873, 1054
BmuI	ACTGGG	1 cut(s)	1148
BpiI	GAAGAC	2 cut(s)	852, 1081
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpmI	CTGGAG	1 cut(s)	689
BpuEI	CTTGAG	3 cut(s)	210, 281, 1025
BpuMI	CCSGG	1 cut(s)	1122
BsaJI	CCNNGG	3 cut(s)	448, 749, 1195
BsaWI	WCCGGW	2 cut(s)	774, 1113
Bsc4I	CCNNNNNNNGG	1 cut(s)	1120
Bse1I	ACTGG	1 cut(s)	1143
BseBI	CCWGG	5 cut(s)	36, 158, 449, 668, 1197
BseDI	CCNNGG	3 cut(s)	448, 749, 1195
BseGI	GGATG	4 cut(s)	16, 244, 550, 871
BseLI	CCNNNNNNNGG	1 cut(s)	1120
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	1143
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	848, 1003
BsgI	GTGCAG	2 cut(s)	447, 855
BshFI	GGCC	2 cut(s)	1134, 1298
BsiHKAI	GWGCWC	1 cut(s)	774
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	3 cut(s)	775, 1114, 1121
BsiWI	CGTACG	1 cut(s)	486
BslFI	GGGAC	4 cut(s)	31, 289, 310, 891
BslI	CCNNNNNNNGG	1 cut(s)	1120
BsmAI	GTCTC	1 cut(s)	613
BsmFI	GGGAC	4 cut(s)	31, 289, 310, 891
BsmI	GAATGC	1 cut(s)	959
BsnI	GGCC	2 cut(s)	1134, 1298
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp143I	GATC	6 cut(s)	100, 201, 230, 341, 444, 612
BspANI	GGCC	2 cut(s)	1134, 1298
BspCNI	CTCAG	1 cut(s)	247
BspHI	TCATGA	2 cut(s)	210, 1287
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	901
BspPI	GGATC	2 cut(s)	238, 439
BsrI	ACTGG	1 cut(s)	1143
BssECI	CCNNGG	3 cut(s)	448, 749, 1195
BssMI	GATC	6 cut(s)	100, 201, 230, 341, 444, 612
BssT1I	CCWWGG	1 cut(s)	749
Bst2UI	CCWGG	5 cut(s)	36, 158, 449, 668, 1197
Bst4CI	ACNGT	1 cut(s)	730
BstC8I	GCNNGC	4 cut(s)	369, 573, 809, 1192
BstDEI	CTNAG	3 cut(s)	234, 412, 1101
BstF5I	GGATG	4 cut(s)	16, 244, 550, 871
BstKTI	GATC	6 cut(s)	103, 204, 233, 344, 447, 615
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	6 cut(s)	100, 201, 230, 341, 444, 612
BstMWI	GCNNNNNNNGC	3 cut(s)	817, 833, 1140
BstNI	CCWGG	5 cut(s)	36, 158, 449, 668, 1197
BstNSI	RCATGY	1 cut(s)	1100
BstSCI	CCNGG	6 cut(s)	34, 156, 447, 666, 1120, 1195
BstSFI	CTRYAG	1 cut(s)	897
BstV1I	GCAGC	2 cut(s)	848, 1003
BstV2I	GAAGAC	2 cut(s)	852, 1081
BstX2I	RGATCY	4 cut(s)	201, 230, 341, 444
BstYI	RGATCY	4 cut(s)	201, 230, 341, 444
BsuI	GTATCC	2 cut(s)	691, 1110
BsuRI	GGCC	2 cut(s)	1134, 1298
BtsCI	GGATG	4 cut(s)	16, 244, 550, 871
BtsIMutI	CAGTG	2 cut(s)	117, 464
Cac8I	GCNNGC	4 cut(s)	369, 573, 809, 1192
CciI	TCATGA	2 cut(s)	210, 1287
Cfr13I	GGNCC	2 cut(s)	276, 1297
CseI	GACGC	1 cut(s)	857
Csp6I	GTAC	2 cut(s)	256, 487
CviAII	CATG	5 cut(s)	211, 812, 1097, 1130, 1288
CviQI	GTAC	2 cut(s)	256, 487
DdeI	CTNAG	3 cut(s)	234, 412, 1101
DpnI	GATC	6 cut(s)	102, 203, 232, 343, 446, 614
DpnII	GATC	6 cut(s)	100, 201, 230, 341, 444, 612
DraI	TTTAAA	1 cut(s)	1083
EaeI	YGGCCR	1 cut(s)	1132
Eco130I	CCWWGG	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	276
Eco57I	CTGAAG	3 cut(s)	141, 167, 488
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	5 cut(s)	34, 156, 447, 666, 1195
EcoT14I	CCWWGG	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	5 cut(s)	214, 815, 1100, 1133, 1291
FaqI	GGGAC	4 cut(s)	31, 289, 310, 891
FatI	CATG	5 cut(s)	210, 811, 1096, 1129, 1287
FauNDI	CATATG	1 cut(s)	498
Fnu4HI	GCNGC	2 cut(s)	837, 1017
FokI	GGATG	4 cut(s)	23, 251, 557, 878
Fsp4HI	GCNGC	2 cut(s)	837, 1017
FspBI	CTAG	4 cut(s)	57, 320, 408, 926
GluI	GCNGC	2 cut(s)	837, 1017
GsuI	CTGGAG	1 cut(s)	689
HaeIII	GGCC	2 cut(s)	1134, 1298
HapII	CCGG	3 cut(s)	775, 1114, 1121
HgaI	GACGC	1 cut(s)	857
Hin1II	CATG	5 cut(s)	214, 815, 1100, 1133, 1291
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HpaII	CCGG	3 cut(s)	775, 1114, 1121
HphI	GGTGA	2 cut(s)	200, 598
Hpy166II	GTNNAC	2 cut(s)	154, 1010
Hpy188I	TCNGA	5 cut(s)	138, 426, 918, 1060, 1259
Hpy8I	GTNNAC	2 cut(s)	154, 1010
HpyAV	CCTTC	4 cut(s)	236, 463, 1021, 1254
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4IV	ACGT	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	3 cut(s)	817, 833, 1140
HpyF3I	CTNAG	3 cut(s)	234, 412, 1101
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	5 cut(s)	214, 815, 1100, 1133, 1291
Kzo9I	GATC	6 cut(s)	100, 201, 230, 341, 444, 612
LmnI	GCTCC	4 cut(s)	472, 568, 604, 1232
Lsp1109I	GCAGC	2 cut(s)	848, 1003
LweI	GCATC	4 cut(s)	565, 829, 873, 1054
MaeI	CTAG	4 cut(s)	57, 320, 408, 926
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	6 cut(s)	102, 203, 232, 343, 446, 614
MboI	GATC	6 cut(s)	100, 201, 230, 341, 444, 612
MboII	GAAGA	8 cut(s)	173, 428, 454, 622, 790, 857, 1040, 1086
MfeI	CAATTG	1 cut(s)	1301
MflI	RGATCY	4 cut(s)	201, 230, 341, 444
MhlI	GDGCHC	1 cut(s)	774
MlyI	GAGTC	3 cut(s)	332, 615, 1194
MmeI	TCCRAC	2 cut(s)	921, 1134
MnlI	CCTC	9 cut(s)	91, 256, 260, 338, 388, 505, 539, 664, 676
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	5 cut(s)	363, 552, 650, 657, 1082
MslI	CAYNNNNRTG	1 cut(s)	1292
MspI	CCGG	3 cut(s)	775, 1114, 1121
MspR9I	CCNGG	6 cut(s)	36, 158, 449, 668, 1122, 1197
MunI	CAATTG	1 cut(s)	1301
Mva1269I	GAATGC	1 cut(s)	959
MvaI	CCWGG	5 cut(s)	36, 158, 449, 668, 1197
MwoI	GCNNNNNNNGC	3 cut(s)	817, 833, 1140
NciI	CCSGG	1 cut(s)	1122
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	6 cut(s)	100, 201, 230, 341, 444, 612
NlaIII	CATG	5 cut(s)	214, 815, 1100, 1133, 1291
NlaIV	GGNNCC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	1100
PaeR7I	CTCGAG	1 cut(s)	251
PagI	TCATGA	2 cut(s)	210, 1287
PctI	GAATGC	1 cut(s)	959
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	9 cut(s)	133, 178, 305, 479, 589, 644, 686, 1055, 1267
Pfl23II	CGTACG	1 cut(s)	486
PfoI	TCCNGGA	2 cut(s)	34, 666
PkrI	GCNGC	2 cut(s)	838, 1018
PleI	GAGTC	3 cut(s)	331, 615, 1194
PpsI	GAGTC	3 cut(s)	331, 615, 1194
Psp6I	CCWGG	5 cut(s)	34, 156, 447, 666, 1195
PspGI	CCWGG	5 cut(s)	34, 156, 447, 666, 1195
PspLI	CGTACG	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	276, 1297
PspXI	VCTCGAGB	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	901
PsuI	RGATCY	4 cut(s)	201, 230, 341, 444
RsaI	GTAC	2 cut(s)	257, 488
RsaNI	GTAC	2 cut(s)	256, 487
RseI	CAYNNNNRTG	1 cut(s)	1292
SaqAI	TTAA	5 cut(s)	363, 552, 650, 657, 1082
SatI	GCNGC	2 cut(s)	837, 1017
Sau3AI	GATC	6 cut(s)	100, 201, 230, 341, 444, 612
Sau96I	GGNCC	2 cut(s)	276, 1297
SchI	GAGTC	3 cut(s)	332, 615, 1194
ScrFI	CCNGG	6 cut(s)	36, 158, 449, 668, 1122, 1197
SduI	GDGCHC	1 cut(s)	774
SfaNI	GCATC	4 cut(s)	565, 829, 873, 1054
SfcI	CTRYAG	1 cut(s)	897
Sfr274I	CTCGAG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	276
SlaI	CTCGAG	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	1292
SmlI	CTYRAG	4 cut(s)	225, 251, 260, 1040
SmoI	CTYRAG	4 cut(s)	225, 251, 260, 1040
SspI	AATATT	1 cut(s)	1210
SspMI	CTAG	4 cut(s)	57, 320, 408, 926
StyD4I	CCNGG	6 cut(s)	34, 156, 447, 666, 1120, 1195
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	1 cut(s)	730
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	4 cut(s)	252, 624, 853, 1203
TfiI	GAWTC	9 cut(s)	133, 178, 305, 479, 589, 644, 686, 1055, 1267
Tru1I	TTAA	5 cut(s)	363, 552, 650, 657, 1082
Tru9I	TTAA	5 cut(s)	363, 552, 650, 657, 1082
TscAI	CASTG	2 cut(s)	124, 471
TseI	GCWGC	2 cut(s)	836, 1016
TspDTI	ATGAA	9 cut(s)	227, 255, 318, 515, 561, 636, 642, 828, 1276
TspRI	CASTG	2 cut(s)	124, 471
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	3 cut(s)	548, 782, 912
XceI	RCATGY	1 cut(s)	1100
XhoI	CTCGAG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	4 cut(s)	57, 320, 408, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.