Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8426267.1

Orthogroup ID

OG0031200

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 691

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8426267.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgctttgttatcgttttgttgagaaaatggaaattgtgcatataattccgttaagaatggcaataactatgttaagtttgttgatgttggtacaattgccagcaatccctgcctctgcgtttgtcatacagtcaaaggtttgtaaggaccagtttgcctatgcgacttctaatgggaaggacttgttttacataaatgggaattcagtggagaaagctttattctgtaatgctcttcaaacatactatgcaaatggttgcattttggaggggtgccttggaagcagccattgtggatcagtcatttcactaggaagaaaacttatgcaaaaggagtttaaggatgaatccactttccatcatggagaaaacaagaacgcttctaaatctatgtccacaaccaaaacagttgcaatagcagcaagtggagcattattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

146

Amino Acids

15.98

Weight (kDa)

8.75

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031200)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8426267.1_g000001 Rmu_sc0002299.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AclWI	GGATC	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
AlwI	GGATC	1 cut(s)	304
ApeKI	GCWGC	2 cut(s)	285, 419
ApoI	RAATTY	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	297, 431
BccI	CCATC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	2 cut(s)	286, 420
BlsI	GCNGC	2 cut(s)	287, 421
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	349
BseNI	ACTGG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	297, 431
BshNI	GGYRCC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	304
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	277
Bst4CI	ACNGT	2 cut(s)	132, 409
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 282, 419, 428
BstV1I	GCAGC	2 cut(s)	297, 431
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	2 cut(s)	218, 288
CviKI_1	RGCY	2 cut(s)	218, 288
CviQI	GTAC	1 cut(s)	92
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	1 cut(s)	365
FatI	CATG	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	286, 420
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	2 cut(s)	286, 420
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	2 cut(s)	286, 420
Hin1II	CATG	1 cut(s)	365
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	396
Hpy8I	GTNNAC	1 cut(s)	396
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	132, 409
HpyCH4V	TGCA	5 cut(s)	40, 251, 261, 328, 413
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 282, 419, 428
Hsp92II	CATG	1 cut(s)	365
Kzo9I	GATC	1 cut(s)	296
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	428
LpnPI	CCDG	3 cut(s)	114, 123, 164
Lsp1109I	GCAGC	2 cut(s)	297, 431
MaeI	CTAG	1 cut(s)	311
MalI	GATC	1 cut(s)	298
MboI	GATC	1 cut(s)	296
MboII	GAAGA	2 cut(s)	227, 327
MfeI	CAATTG	1 cut(s)	95
MluCI	AATT	4 cut(s)	33, 45, 95, 202
MnlI	CCTC	2 cut(s)	124, 262
MseI	TTAA	3 cut(s)	53, 74, 339
MunI	CAATTG	1 cut(s)	95
MwoI	GCNNNNNNNGC	4 cut(s)	110, 282, 419, 428
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	1 cut(s)	275
PciSI	GCTCTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	287, 421
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	53, 74, 339
SatI	GCNGC	2 cut(s)	286, 420
Sau3AI	GATC	1 cut(s)	296
Sau96I	GGNCC	1 cut(s)	148
SetI	ASST	2 cut(s)	141, 220
SgeI	CNNG	8 cut(s)	113, 122, 163, 196, 290, 323, 374, 385
SinI	GGWCC	1 cut(s)	148
Sse9I	AATT	4 cut(s)	33, 45, 95, 202
SspMI	CTAG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	132, 409
TasI	AATT	4 cut(s)	33, 45, 95, 202
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	3 cut(s)	53, 74, 339
Tru9I	TTAA	3 cut(s)	53, 74, 339
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	2 cut(s)	285, 419
TspDTI	ATGAA	1 cut(s)	360
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	1 cut(s)	202
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.