Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002299.1

Orthogroup ID

OG0031200

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 9720

Gene Structure 9720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002299.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 578 bp

atggaaattgtgcatataattccgttaagaatggcaataactatgttaagtttgttgatgttggtacaattgccagcaatccctgcctctgcgtttgtcatacagtcaaaggtttgtaaggaccagtttgcctatgcgacttctaatgggaaggacttgttttacataaatgggaattcagtggagaaagctttattctgtaatgctcttcaaacatactatgcaaatggttgcattttggaggggtgccttggaagcagccattgtggatcagtcatttcactaggaagaaaacttatgcaaaaggagtttaaggatgaatccactttccatcatggagaaaacaagaacgcttctaaatctatgtccacaaccaaaacagttgcaatagcagcaagtggagcattattgtttcagcctttcaggattcaggatggtcgtatgtggtttgtcctcatctgctcttgtgggcgcgcgcgtagggaaaaggaaacttcgcttttgggaaccaccattggtggtgggccactgcgcgtggaaaccatgcagtacacgtcagcagaaggctcacactttcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

193

Amino Acids

21.17

Weight (kDa)

9.01

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031200)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8426267.1_g000001 Rmu_sc0002299.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	246
AccII	CGCG	4 cut(s)	474, 476, 478, 534
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	175
AfaI	GTAC	2 cut(s)	66, 551
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	1 cut(s)	212
AjiI	CACGTC	1 cut(s)	555
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	1 cut(s)	524
ApeKI	GCWGC	2 cut(s)	258, 392
ApoI	RAATTY	1 cut(s)	175
AspLEI	GCGC	4 cut(s)	474, 476, 478, 534
AspS9I	GGNCC	2 cut(s)	121, 524
AvaII	GGWCC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	270, 404
BccI	CCATC	2 cut(s)	339, 428
BfaI	CTAG	1 cut(s)	284
BisI	GCNGC	2 cut(s)	259, 393
BlsI	GCNGC	2 cut(s)	260, 394
Bme18I	GGWCC	1 cut(s)	121
BmgBI	CACGTC	1 cut(s)	555
BmgT120I	GGNCC	2 cut(s)	121, 524
BmiI	GGNNCC	2 cut(s)	248, 508
BsaJI	CCNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	2 cut(s)	322, 439
BseNI	ACTGG	1 cut(s)	124
BsePI	GCGCGC	2 cut(s)	472, 474
BseXI	GCAGC	2 cut(s)	270, 404
Bsh1236I	CGCG	4 cut(s)	474, 476, 478, 534
BshFI	GGCC	1 cut(s)	526
BshNI	GGYRCC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	526
Bsp143I	GATC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	526
BspFNI	CGCG	4 cut(s)	474, 476, 478, 534
BspLI	GGNNCC	2 cut(s)	248, 508
BspPI	GGATC	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	250
BssHII	GCGCGC	2 cut(s)	472, 474
BssMI	GATC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	105, 382
Bst6I	CTCTTC	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	75, 474, 476
BstF5I	GGATG	2 cut(s)	322, 439
BstFNI	CGCG	4 cut(s)	474, 476, 478, 534
BstHHI	GCGC	4 cut(s)	474, 476, 478, 534
BstKTI	GATC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 255, 392, 401
BstUI	CGCG	4 cut(s)	474, 476, 478, 534
BstV1I	GCAGC	2 cut(s)	270, 404
BsuRI	GGCC	1 cut(s)	526
BtrI	CACGTC	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	322, 439
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	2 cut(s)	186, 527
Cac8I	GCNNGC	3 cut(s)	75, 474, 476
CfoI	GCGC	4 cut(s)	474, 476, 478, 534
Cfr13I	GGNCC	2 cut(s)	121, 524
Csp6I	GTAC	2 cut(s)	65, 550
CviAII	CATG	2 cut(s)	335, 544
CviJI	RGCY	5 cut(s)	191, 261, 418, 526, 567
CviKI_1	RGCY	5 cut(s)	191, 261, 418, 526, 567
CviQI	GTAC	2 cut(s)	65, 550
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	2 cut(s)	338, 547
FatI	CATG	2 cut(s)	334, 543
Fnu4HI	GCNGC	2 cut(s)	259, 393
FokI	GGATG	2 cut(s)	329, 446
Fsp4HI	GCNGC	2 cut(s)	259, 393
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	4 cut(s)	473, 475, 477, 533
GluI	GCNGC	2 cut(s)	259, 393
HaeIII	GGCC	1 cut(s)	526
HhaI	GCGC	4 cut(s)	474, 476, 478, 534
Hin1II	CATG	2 cut(s)	338, 547
Hin6I	GCGC	4 cut(s)	472, 474, 476, 532
HinP1I	GCGC	4 cut(s)	472, 474, 476, 532
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	2 cut(s)	320, 427
Hpy166II	GTNNAC	2 cut(s)	369, 552
Hpy188III	TCNNGA	2 cut(s)	424, 431
Hpy8I	GTNNAC	2 cut(s)	369, 552
HpyAV	CCTTC	2 cut(s)	145, 557
HpyCH4III	ACNGT	2 cut(s)	105, 382
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	6 cut(s)	13, 224, 234, 301, 386, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 255, 392, 401
HpySE526I	ACGT	1 cut(s)	554
Hsp92II	CATG	2 cut(s)	338, 547
HspAI	GCGC	4 cut(s)	472, 474, 476, 532
Kzo9I	GATC	1 cut(s)	269
LguI	GCTCTTC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	5 cut(s)	87, 96, 137, 409, 416
Lsp1109I	GCAGC	2 cut(s)	270, 404
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	554
MalI	GATC	1 cut(s)	271
MauBI	CGCGCGCG	1 cut(s)	474
MboI	GATC	1 cut(s)	269
MboII	GAAGA	2 cut(s)	200, 300
MfeI	CAATTG	1 cut(s)	68
MluCI	AATT	4 cut(s)	6, 18, 68, 175
MnlI	CCTC	3 cut(s)	97, 235, 464
MseI	TTAA	3 cut(s)	26, 47, 312
MunI	CAATTG	1 cut(s)	68
MvnI	CGCG	4 cut(s)	474, 476, 478, 534
MwoI	GCNNNNNNNGC	4 cut(s)	83, 255, 392, 401
NdeII	GATC	1 cut(s)	269
NlaIII	CATG	2 cut(s)	338, 547
NlaIV	GGNNCC	2 cut(s)	248, 508
PauI	GCGCGC	2 cut(s)	472, 474
PciSI	GCTCTTC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	320, 427
PkrI	GCNGC	2 cut(s)	260, 394
PspN4I	GGNNCC	2 cut(s)	248, 508
PspPI	GGNCC	2 cut(s)	121, 524
PteI	GCGCGC	2 cut(s)	472, 474
RsaI	GTAC	2 cut(s)	66, 551
RsaNI	GTAC	2 cut(s)	65, 550
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	26, 47, 312
SatI	GCNGC	2 cut(s)	259, 393
Sau3AI	GATC	1 cut(s)	269
Sau96I	GGNCC	2 cut(s)	121, 524
SetI	ASST	3 cut(s)	114, 193, 557
SinI	GGWCC	1 cut(s)	121
Sse9I	AATT	4 cut(s)	6, 18, 68, 175
SspMI	CTAG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	105, 382
TaiI	ACGT	1 cut(s)	557
TasI	AATT	4 cut(s)	6, 18, 68, 175
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	2 cut(s)	320, 427
Tru1I	TTAA	3 cut(s)	26, 47, 312
Tru9I	TTAA	3 cut(s)	26, 47, 312
TscAI	CASTG	2 cut(s)	186, 534
TseI	GCWGC	2 cut(s)	258, 392
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	2 cut(s)	186, 534
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	1 cut(s)	175
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.