Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8429373.1

Orthogroup ID

OG0031429

Physical Location & Seq

Genomic Coordinates Reverse (-)

430 .. 1179

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8429373.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgggacaagaagctaggagactcgccgatgagtatgaggtagctgagattttagggagaggaggattctcagtagtcaggaaaggcatcagtagaaaagcaggtaccagtgccaaaaacaatgttgccatcaaaacactcaaaagaccatttgggggctcttcctcttcctcttcctcatccaaaaactcttcatttaatcctggtttgaagcagggcttcccagtcccgactaggaaacaagtctctatatctaatgttttgctcacaaatgaaatcttggtcatgaggaagatagttgagaatgtctcgccccatccgaatgtgattgacctctatgatgtgtatgaggatgagaatggggttcaccttgtgctggagctttgttctggtggcgaactctttgataggattgtgaagcaagagaggtactctgaggcaggggctgcagctgtggtcaggcagattgcacagggcttagctgctctgcacaagtcagatattgttcatagggatttgaagcctgagaattgtctcttcttaaatagtagtgatgattctccattgaagatcatggactttgggctcagttctgtcgaggagtttactgaccctgttgttggcttgtttggttccattgattatgtctcaccagaggctctttctcagggacaaatcactagtaaaagtgatatgtgggctcttggtgtaatcttgtatatccttctctctgggtatgtgtgtatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009877 GO:0009931 GO:0009987 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 ko04921 ko04925 ko05145 map04626 map04921 map04925 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

249

Amino Acids

27.06

Weight (kDa)

5.86

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031429)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8429373.1_g000001 Rmu_sc0009526.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
Acc65I	GGTACC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	104
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	2 cut(s)	106, 431
AfiI	CCNNNNNNNGG	3 cut(s)	155, 376, 620
AgsI	TTSAA	3 cut(s)	211, 520, 568
AhlI	ACTAGT	1 cut(s)	680
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	5 cut(s)	14, 44, 382, 452, 482
AluI	AGCT	5 cut(s)	14, 44, 382, 452, 482
Alw26I	GTCTC	5 cut(s)	13, 250, 313, 539, 652
AlwNI	CAGNNNCTG	1 cut(s)	446
ApeKI	GCWGC	3 cut(s)	446, 449, 482
Asp718I	GGTACC	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	359, 642
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	3 cut(s)	161, 588, 703
BbvI	GCAGC	3 cut(s)	433, 461, 469
BccI	CCATC	2 cut(s)	137, 324
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	5 cut(s)	13, 250, 313, 539, 652
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	3 cut(s)	15, 234, 681
BfmI	CTRYAG	1 cut(s)	447
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	447, 450, 483
BlpI	GCTNAGC	1 cut(s)	478
BlsI	GCNGC	3 cut(s)	448, 451, 484
Bme1390I	CCNGG	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	106, 634
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	218
BplI	GAGNNNNNCTC	4 cut(s)	293, 325, 416, 448
BpmI	CTGGAG	1 cut(s)	398
Bpu1102I	GCTNAGC	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 376, 620
Bse1I	ACTGG	2 cut(s)	108, 224
BseBI	CCWGG	1 cut(s)	204
BseGI	GGATG	3 cut(s)	179, 316, 358
BseLI	CCNNNNNNNGG	3 cut(s)	155, 376, 620
BseMII	CTCAG	6 cut(s)	36, 84, 426, 516, 601, 680
BseNI	ACTGG	2 cut(s)	108, 224
BseRI	GAGGAG	2 cut(s)	75, 614
BseXI	GCAGC	3 cut(s)	433, 461, 469
BsgI	GTGCAG	1 cut(s)	473
BshNI	GGYRCC	1 cut(s)	104
BslFI	GGGAC	3 cut(s)	18, 212, 684
BslI	CCNNNNNNNGG	3 cut(s)	155, 376, 620
BsmAI	GTCTC	5 cut(s)	13, 250, 313, 539, 652
BsmFI	GGGAC	3 cut(s)	18, 212, 684
Bsp1286I	GDGCHC	3 cut(s)	161, 588, 703
Bsp143I	GATC	1 cut(s)	570
Bsp1720I	GCTNAGC	1 cut(s)	478
BspCNI	CTCAG	6 cut(s)	37, 83, 427, 517, 600, 679
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	106, 634
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	92
BspQI	GCTCTTC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	108, 224
BssMI	GATC	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	204
Bst6I	CTCTTC	5 cut(s)	166, 172, 178, 196, 542
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstDEI	CTNAG	7 cut(s)	45, 70, 435, 478, 525, 587, 666
BstF5I	GGATG	3 cut(s)	179, 316, 358
BstKTI	GATC	1 cut(s)	573
BstMAI	GTCTC	5 cut(s)	13, 250, 313, 539, 652
BstMBI	GATC	1 cut(s)	570
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	433, 461, 469
BtsCI	GGATG	3 cut(s)	179, 316, 358
BtsIMutI	CAGTG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	446
CciI	TCATGA	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	105, 430
CviAII	CATG	2 cut(s)	286, 574
CviQI	GTAC	2 cut(s)	105, 430
DdeI	CTNAG	7 cut(s)	45, 70, 435, 478, 525, 587, 666
DpnI	GATC	1 cut(s)	572
DpnII	GATC	1 cut(s)	570
DraIII	CACNNNGTG	1 cut(s)	373
Eam1104I	CTCTTC	5 cut(s)	166, 172, 178, 196, 542
EarI	CTCTTC	5 cut(s)	166, 172, 178, 196, 542
Eco24I	GRGCYC	3 cut(s)	161, 588, 703
EcoRII	CCWGG	1 cut(s)	202
EcoT38I	GRGCYC	3 cut(s)	161, 588, 703
FaeI	CATG	2 cut(s)	289, 577
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	3 cut(s)	18, 212, 684
FatI	CATG	2 cut(s)	285, 573
Fnu4HI	GCNGC	3 cut(s)	447, 450, 483
FokI	GGATG	3 cut(s)	166, 303, 365
FriOI	GRGCYC	3 cut(s)	161, 588, 703
Fsp4HI	GCNGC	3 cut(s)	447, 450, 483
FspBI	CTAG	3 cut(s)	15, 234, 681
GluI	GCNGC	3 cut(s)	447, 450, 483
GsuI	CTGGAG	1 cut(s)	398
Hin1II	CATG	2 cut(s)	289, 577
HinfI	GANTC	3 cut(s)	21, 66, 557
HphI	GGTGA	2 cut(s)	359, 642
Hpy166II	GTNNAC	2 cut(s)	367, 606
Hpy188I	TCNGA	3 cut(s)	321, 436, 499
Hpy188III	TCNNGA	3 cut(s)	79, 229, 286
Hpy8I	GTNNAC	2 cut(s)	367, 606
HpyAV	CCTTC	1 cut(s)	734
HpyCH4V	TGCA	3 cut(s)	449, 470, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	7 cut(s)	45, 70, 435, 478, 525, 587, 666
Hsp92II	CATG	2 cut(s)	289, 577
KpnI	GGTACC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	570
LguI	GCTCTTC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	3 cut(s)	433, 461, 469
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	3 cut(s)	15, 234, 681
MalI	GATC	1 cut(s)	572
MboI	GATC	1 cut(s)	570
MboII	GAAGA	7 cut(s)	153, 159, 165, 183, 304, 529, 580
MhlI	GDGCHC	3 cut(s)	161, 588, 703
MluCI	AATT	1 cut(s)	529
MlyI	GAGTC	1 cut(s)	15
MseI	TTAA	2 cut(s)	198, 542
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeII	GATC	1 cut(s)	570
NlaIII	CATG	2 cut(s)	289, 577
NlaIV	GGNNCC	2 cut(s)	106, 634
PagI	TCATGA	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	66, 557
PkrI	GCNGC	3 cut(s)	448, 451, 484
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	106, 634
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	2 cut(s)	106, 431
RsaNI	GTAC	2 cut(s)	105, 430
RseI	CAYNNNNRTG	1 cut(s)	321
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	198, 542
SatI	GCNGC	3 cut(s)	447, 450, 483
Sau3AI	GATC	1 cut(s)	570
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	3 cut(s)	161, 588, 703
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	321
SpeI	ACTAGT	1 cut(s)	680
Sse9I	AATT	1 cut(s)	529
SspMI	CTAG	3 cut(s)	15, 234, 681
StyD4I	CCNGG	1 cut(s)	202
TaqI	TCGA	1 cut(s)	597
TasI	AATT	1 cut(s)	529
TfiI	GAWTC	2 cut(s)	66, 557
Tru1I	TTAA	2 cut(s)	198, 542
Tru9I	TTAA	2 cut(s)	198, 542
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	3 cut(s)	446, 449, 482
TspDTI	ATGAA	3 cut(s)	183, 288, 497
TspRI	CASTG	1 cut(s)	115
XspI	CTAG	3 cut(s)	15, 234, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.