Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009526.1

Orthogroup ID

OG0031429

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1660

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009526.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgggacaagaagctaggagactcgccgatgagtatgaggtagctgagattttagggagaggaggattctcagtagtcaggaaaggcatcagtagaaaagcaggtaccagtgccaaaaacaatgttgccatcaaaacactcaaaagaccatttgggggctcttcctcttcctcttcctcatccaaaaactcttcatttaatcctggtttgaagcagggcttcccagtcccgactaggaaacaagtctctatatctaatgttttgctcacaaatgaaatcttggtcatgaggaagatagttgagaatgtctcgccccatccgaatgtgattgacctctatgatgtgtatgaggatgagaatggggttcaccttgtgctggagctttgttctggtggcgaactctttgataggattgtgaagcaagagaggtactctgaggcaggggctgcagctgtggtcaggcagattgcacagggcttagctgctctgcacaagtcagatattgttcatagggatttgaagcctgagaattgtctcttcttaaatagtagtgatgattctccattgaagatcatggactttgggctcagttctgtcgaggagtttactgaccctgttgttggcttgtttggttccattgattatgtctcaccagaggctctttctcagggacaaatcactagtaaaagtgatatgtgggctcttggtgtaatcttgtatatccttctctctgggtacccaccttttattgctcagtcgaatcggcagaagcagcagatgataatggccggagaattcagcttttacgagaaaacttggaagggaatttccttatcagcgaagcaattaatatcagacctcctcaaagttgaccctgaaaagagacctagtgctcaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009877 GO:0009931 GO:0009987 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 ko04921 ko04925 ko05145 map04626 map04921 map04925 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

300

Amino Acids

32.9

Weight (kDa)

6.47

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031429)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8429373.1_g000001 Rmu_sc0009526.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
Acc65I	GGTACC	2 cut(s)	104, 735
AccB1I	GGYRCC	2 cut(s)	104, 735
AcoI	YGGCCR	1 cut(s)	786
AcsI	RAATTY	2 cut(s)	794, 825
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	3 cut(s)	106, 431, 737
AfiI	CCNNNNNNNGG	3 cut(s)	155, 376, 620
AgsI	TTSAA	3 cut(s)	211, 520, 568
AhlI	ACTAGT	1 cut(s)	680
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	6 cut(s)	14, 44, 382, 452, 482, 801
AluI	AGCT	6 cut(s)	14, 44, 382, 452, 482, 801
Alw21I	GWGCWC	1 cut(s)	895
Alw26I	GTCTC	6 cut(s)	13, 250, 313, 539, 652, 877
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	1 cut(s)	786
ApeKI	GCWGC	4 cut(s)	446, 449, 482, 772
ApoI	RAATTY	2 cut(s)	794, 825
AseI	ATTAAT	1 cut(s)	848
Asp718I	GGTACC	2 cut(s)	104, 735
AsuHPI	GGTGA	2 cut(s)	359, 642
BanI	GGYRCC	2 cut(s)	104, 735
BanII	GRGCYC	3 cut(s)	161, 588, 703
Bbv12I	GWGCWC	1 cut(s)	895
BbvI	GCAGC	4 cut(s)	433, 461, 469, 784
BccI	CCATC	2 cut(s)	137, 324
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	6 cut(s)	13, 250, 313, 539, 652, 877
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	4 cut(s)	15, 234, 681, 888
BfmI	CTRYAG	1 cut(s)	447
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	4 cut(s)	447, 450, 483, 773
BlpI	GCTNAGC	1 cut(s)	478
BlsI	GCNGC	4 cut(s)	448, 451, 484, 774
Bme1390I	CCNGG	1 cut(s)	204
BmiI	GGNNCC	3 cut(s)	106, 634, 737
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	218
BplI	GAGNNNNNCTC	4 cut(s)	293, 325, 416, 448
BpmI	CTGGAG	1 cut(s)	398
Bpu1102I	GCTNAGC	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	879
BsaI	GGTCTC	1 cut(s)	877
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 376, 620
Bse1I	ACTGG	2 cut(s)	108, 224
BseBI	CCWGG	1 cut(s)	204
BseGI	GGATG	3 cut(s)	179, 316, 358
BseLI	CCNNNNNNNGG	3 cut(s)	155, 376, 620
BseMII	CTCAG	7 cut(s)	36, 84, 426, 516, 601, 680, 767
BseNI	ACTGG	2 cut(s)	108, 224
BseRI	GAGGAG	3 cut(s)	75, 614, 851
BseXI	GCAGC	4 cut(s)	433, 461, 469, 784
BsgI	GTGCAG	1 cut(s)	473
BshFI	GGCC	1 cut(s)	788
BshNI	GGYRCC	2 cut(s)	104, 735
BsiHKAI	GWGCWC	1 cut(s)	895
BsiSI	CCGG	1 cut(s)	789
BslFI	GGGAC	3 cut(s)	18, 212, 684
BslI	CCNNNNNNNGG	3 cut(s)	155, 376, 620
BsmAI	GTCTC	6 cut(s)	13, 250, 313, 539, 652, 877
BsmFI	GGGAC	3 cut(s)	18, 212, 684
BsnI	GGCC	1 cut(s)	788
Bso31I	GGTCTC	1 cut(s)	877
Bsp1286I	GDGCHC	4 cut(s)	161, 588, 703, 895
Bsp143I	GATC	1 cut(s)	570
Bsp1720I	GCTNAGC	1 cut(s)	478
BspANI	GGCC	1 cut(s)	788
BspCNI	CTCAG	7 cut(s)	37, 83, 427, 517, 600, 679, 766
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	3 cut(s)	106, 634, 737
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	92
BspQI	GCTCTTC	1 cut(s)	166
BspT107I	GGYRCC	2 cut(s)	104, 735
BspTNI	GGTCTC	1 cut(s)	877
BsrI	ACTGG	2 cut(s)	108, 224
BssMI	GATC	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	204
Bst6I	CTCTTC	5 cut(s)	166, 172, 178, 196, 542
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstDEI	CTNAG	8 cut(s)	45, 70, 435, 478, 525, 587, 666, 753
BstF5I	GGATG	3 cut(s)	179, 316, 358
BstKTI	GATC	1 cut(s)	573
BstMAI	GTCTC	6 cut(s)	13, 250, 313, 539, 652, 877
BstMBI	GATC	1 cut(s)	570
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 772
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	4 cut(s)	433, 461, 469, 784
BsuRI	GGCC	1 cut(s)	788
BtsCI	GGATG	3 cut(s)	179, 316, 358
BtsIMutI	CAGTG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	446
CciI	TCATGA	1 cut(s)	285
Csp6I	GTAC	3 cut(s)	105, 430, 736
CviAII	CATG	2 cut(s)	286, 574
CviQI	GTAC	3 cut(s)	105, 430, 736
DdeI	CTNAG	8 cut(s)	45, 70, 435, 478, 525, 587, 666, 753
DpnI	GATC	1 cut(s)	572
DpnII	GATC	1 cut(s)	570
DraIII	CACNNNGTG	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	786
Eam1104I	CTCTTC	5 cut(s)	166, 172, 178, 196, 542
EarI	CTCTTC	5 cut(s)	166, 172, 178, 196, 542
Eco24I	GRGCYC	3 cut(s)	161, 588, 703
Eco31I	GGTCTC	1 cut(s)	877
EcoRI	GAATTC	1 cut(s)	794
EcoRII	CCWGG	1 cut(s)	202
EcoT38I	GRGCYC	3 cut(s)	161, 588, 703
FaeI	CATG	2 cut(s)	289, 577
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	3 cut(s)	18, 212, 684
FatI	CATG	2 cut(s)	285, 573
Fnu4HI	GCNGC	4 cut(s)	447, 450, 483, 773
FokI	GGATG	3 cut(s)	166, 303, 365
FriOI	GRGCYC	3 cut(s)	161, 588, 703
Fsp4HI	GCNGC	4 cut(s)	447, 450, 483, 773
FspBI	CTAG	4 cut(s)	15, 234, 681, 888
GluI	GCNGC	4 cut(s)	447, 450, 483, 773
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	788
HapII	CCGG	1 cut(s)	789
Hin1II	CATG	2 cut(s)	289, 577
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HinfI	GANTC	4 cut(s)	21, 66, 557, 760
HpaII	CCGG	1 cut(s)	789
HphI	GGTGA	2 cut(s)	359, 642
Hpy166II	GTNNAC	3 cut(s)	367, 606, 871
Hpy188I	TCNGA	4 cut(s)	321, 436, 499, 856
Hpy188III	TCNNGA	4 cut(s)	79, 229, 286, 896
Hpy8I	GTNNAC	3 cut(s)	367, 606, 871
HpyAV	CCTTC	2 cut(s)	734, 814
HpyCH4V	TGCA	3 cut(s)	449, 470, 490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 772
HpyF3I	CTNAG	8 cut(s)	45, 70, 435, 478, 525, 587, 666, 753
Hsp92II	CATG	2 cut(s)	289, 577
KpnI	GGTACC	2 cut(s)	108, 739
Kzo9I	GATC	1 cut(s)	570
LguI	GCTCTTC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	4 cut(s)	433, 461, 469, 784
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	4 cut(s)	15, 234, 681, 888
MalI	GATC	1 cut(s)	572
MboI	GATC	1 cut(s)	570
MboII	GAAGA	7 cut(s)	153, 159, 165, 183, 304, 529, 580
MhlI	GDGCHC	4 cut(s)	161, 588, 703, 895
MluCI	AATT	4 cut(s)	529, 794, 825, 845
MlyI	GAGTC	1 cut(s)	15
MseI	TTAA	3 cut(s)	198, 542, 848
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	789
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	446, 772
NdeII	GATC	1 cut(s)	570
NlaIII	CATG	2 cut(s)	289, 577
NlaIV	GGNNCC	3 cut(s)	106, 634, 737
PagI	TCATGA	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	66, 557, 760
PkrI	GCNGC	4 cut(s)	448, 451, 484, 774
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	848
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	3 cut(s)	106, 634, 737
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	3 cut(s)	106, 431, 737
RsaNI	GTAC	3 cut(s)	105, 430, 736
RseI	CAYNNNNRTG	1 cut(s)	321
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	3 cut(s)	198, 542, 848
SatI	GCNGC	4 cut(s)	447, 450, 483, 773
Sau3AI	GATC	1 cut(s)	570
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	4 cut(s)	161, 588, 703, 895
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	894
SmoI	CTYRAG	1 cut(s)	894
SpeI	ACTAGT	1 cut(s)	680
Sse9I	AATT	4 cut(s)	529, 794, 825, 845
SspMI	CTAG	4 cut(s)	15, 234, 681, 888
StyD4I	CCNGG	1 cut(s)	202
TaqI	TCGA	2 cut(s)	597, 758
TasI	AATT	4 cut(s)	529, 794, 825, 845
TfiI	GAWTC	3 cut(s)	66, 557, 760
Tru1I	TTAA	3 cut(s)	198, 542, 848
Tru9I	TTAA	3 cut(s)	198, 542, 848
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	4 cut(s)	446, 449, 482, 772
TspDTI	ATGAA	3 cut(s)	183, 288, 497
TspRI	CASTG	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	848
XapI	RAATTY	2 cut(s)	794, 825
XspI	CTAG	4 cut(s)	15, 234, 681, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.