Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8435199.1

Orthogroup ID

OG0013959

Physical Location & Seq

Genomic Coordinates Forward (+)

878 .. 1533

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8435199.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 656 bp

atgaggaacttgttctttagatcagcatctccatcgccttcaaactctccatccagaagcaccataccaccttcctcacctcgccacagcttctccgactcgttgatggaggagaacatcgaaatcgcacagactcttatcatgaaatgggactcttccgacgcctcgtcttatacaaagctcacctctctcttctacgacaaccgccaggaagccaagctgtatctcaaacgcgtcagcgacttacagtcggccatgcaccacttcgttaattctccagactccagcacggaaaagctaattactgcccaaactttgatgcagacggccatgaagagacttgagaaggaattttaccagattttatcggataacagagagaatctagacgcagagacagtgtcgtctagccgctcttctgaatcgagggcctcccctccccgaaccccgactcggtccagcgtttcggatttggaatctgaatccgaggacgagtcgacatttctggaaggggagcaaattgcgactattcctatggaggatttgaaatccatcgccgactgtatgatatccgccggttatggaaaagagtgcgtcaagatctacaagatcatcagaaaatcgattgtggacgaaggactgtaccatctcggagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001505 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006810 GO:0006836 GO:0006887 GO:0006903 GO:0006904 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008013 GO:0008150 GO:0008289 GO:0009987 GO:0016079 GO:0016080 GO:0016081 GO:0016192 GO:0017156 GO:0022406 GO:0023052 GO:0023061 GO:0032940 GO:0032991 GO:0035091 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045055 GO:0046903 GO:0046907 GO:0048278 GO:0048489 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0065007 GO:0065008 GO:0071944 GO:0097479 GO:0097480 GO:0098916 GO:0099003 GO:0099023 GO:0099504 GO:0099536 GO:0099537 GO:0099568 GO:0099643 GO:0140029 GO:0140056 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

219

Amino Acids

24.63

Weight (kDa)

5.22

Isoelectric Point (pI)

76.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59730 AT5G59730
fragaria_vesca	FvH4_3g34720
malus_domestica	MD11G1116300.v1.1
prunus_persica	Prupe.6G086700_v2.0.a1
pyrus_communis	pycom11g09770
rosa_chinensis	RchiOBHm_Chr5g0062431
rosa_laevigata	RLG00000035557
rosa_multiflora	Rmu_co8397283.1_g000001 Rmu_co8435199.1_g000001 Rmu_sc0005277.1_g000014
rosa_rugosa	Rorug05G0349500
rosa_samantha	Rh5AG408500 Rh5BG423600 Rh5CG447400 Rh5DG438200
rosa_wichuraiana	Rw5G038580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	403
AccBSI	CCGCTC	1 cut(s)	414
AccI	GTMKAC	1 cut(s)	497
AccII	CGCG	1 cut(s)	234
AciI	CCGC	3 cut(s)	205, 412, 573
AcoI	YGGCCR	2 cut(s)	252, 327
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	1 cut(s)	453
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	42, 547
AhdI	GACNNNNNGTC	2 cut(s)	166, 247
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	4 cut(s)	90, 181, 220, 298
AluI	AGCT	4 cut(s)	90, 181, 220, 298
Alw26I	GTCTC	2 cut(s)	331, 389
AoxI	GGCC	3 cut(s)	252, 327, 429
ApoI	RAATTY	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	429, 456
AsuHPI	GGTGA	2 cut(s)	69, 175
AvaII	GGWCC	1 cut(s)	456
BarI	GAAGNNNNNNTAC	2 cut(s)	338, 370
BccI	CCATC	5 cut(s)	40, 58, 100, 560, 654
BceAI	ACGGC	1 cut(s)	342
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	331, 389
BfaI	CTAG	2 cut(s)	386, 408
BglII	AGATCT	1 cut(s)	600
BisI	GCNGC	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	413
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	456
BmeRI	GACNNNNNGTC	2 cut(s)	166, 247
BmgT120I	GGNCC	2 cut(s)	429, 456
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	2 cut(s)	35, 309
BpmI	CTGGAG	2 cut(s)	261, 268
BpuEI	CTTGAG	1 cut(s)	362
Bsa29I	ATCGAT	1 cut(s)	623
BsaBI	GATNNNNATC	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse118I	RCCGGY	1 cut(s)	575
Bse8I	GATNNNNATC	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	623
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	1 cut(s)	50
BseJI	GATNNNNATC	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseRI	GAGGAG	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	254, 329, 431
BshVI	ATCGAT	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	576
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmAI	GTCTC	2 cut(s)	331, 389
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	254, 329, 431
Bsp143I	GATC	3 cut(s)	20, 600, 609
BspACI	CCGC	3 cut(s)	205, 412, 573
BspANI	GGCC	3 cut(s)	254, 329, 431
BspDI	ATCGAT	1 cut(s)	623
BspFNI	CGCG	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	141
BspQI	GCTCTTC	1 cut(s)	421
BsrBI	CCGCTC	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	3 cut(s)	20, 600, 609
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	4 cut(s)	249, 400, 563, 642
Bst6I	CTCTTC	4 cut(s)	160, 197, 329, 421
BstACI	GRCGYC	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	3 cut(s)	23, 603, 612
BstMAI	GTCTC	2 cut(s)	331, 389
BstMBI	GATC	3 cut(s)	20, 600, 609
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	600
BstYI	RGATCY	1 cut(s)	600
Bsu15I	ATCGAT	1 cut(s)	623
BsuRI	GGCC	3 cut(s)	254, 329, 431
BsuTUI	ATCGAT	1 cut(s)	623
BtgZI	GCGATG	2 cut(s)	18, 538
BtsCI	GGATG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	405
CciI	TCATGA	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	2 cut(s)	429, 456
ClaI	ATCGAT	1 cut(s)	623
CseI	GACGC	4 cut(s)	170, 223, 398, 583
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	3 cut(s)	142, 256, 331
CviJI	RGCY	9 cut(s)	90, 181, 215, 220, 254, 298, 329, 411, 431
CviKI_1	RGCY	9 cut(s)	90, 181, 215, 220, 254, 298, 329, 411, 431
CviQI	GTAC	1 cut(s)	643
DpnI	GATC	3 cut(s)	22, 602, 611
DpnII	GATC	3 cut(s)	20, 600, 609
DrdI	GACNNNNNNGTC	1 cut(s)	403
DriI	GACNNNNNGTC	2 cut(s)	166, 247
DseDI	GACNNNNNNGTC	1 cut(s)	403
EaeI	YGGCCR	2 cut(s)	252, 327
Eam1104I	CTCTTC	4 cut(s)	160, 197, 329, 421
Eam1105I	GACNNNNNGTC	2 cut(s)	166, 247
EarI	CTCTTC	4 cut(s)	160, 197, 329, 421
EciI	GGCGGA	1 cut(s)	562
Eco32I	GATATC	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	207
EcoRV	GATATC	1 cut(s)	570
FaeI	CATG	3 cut(s)	145, 259, 334
FaiI	YATR	8 cut(s)	65, 143, 174, 257, 332, 536, 566, 582
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	3 cut(s)	141, 255, 330
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	1 cut(s)	412
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	412
FspBI	CTAG	2 cut(s)	386, 408
GluI	GCNGC	1 cut(s)	412
GsuI	CTGGAG	2 cut(s)	261, 268
HaeIII	GGCC	3 cut(s)	254, 329, 431
HapII	CCGG	1 cut(s)	576
HgaI	GACGC	4 cut(s)	170, 223, 398, 583
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	145, 259, 334
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HpaII	CCGG	1 cut(s)	576
HphI	GGTGA	2 cut(s)	69, 175
Hpy166II	GTNNAC	2 cut(s)	498, 631
Hpy188I	TCNGA	9 cut(s)	97, 160, 370, 421, 469, 481, 487, 617, 653
Hpy188III	TCNNGA	6 cut(s)	54, 142, 278, 386, 506, 598
Hpy8I	GTNNAC	2 cut(s)	498, 631
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	5 cut(s)	48, 81, 340, 503, 629
HpyCH4III	ACNGT	4 cut(s)	249, 400, 563, 642
HpyCH4V	TGCA	2 cut(s)	259, 322
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	145, 259, 334
Kzo9I	GATC	3 cut(s)	20, 600, 609
LguI	GCTCTTC	1 cut(s)	421
LmnI	GCTCC	1 cut(s)	514
LpnPI	CCDG	9 cut(s)	67, 194, 221, 291, 298, 371, 472, 491, 589
LweI	GCATC	2 cut(s)	35, 309
MaeI	CTAG	2 cut(s)	386, 408
MalI	GATC	3 cut(s)	22, 602, 611
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	3 cut(s)	20, 600, 609
MboII	GAAGA	4 cut(s)	147, 184, 346, 408
MflI	RGATCY	1 cut(s)	600
MluCI	AATT	4 cut(s)	271, 300, 350, 519
MluI	ACGCGT	1 cut(s)	232
MlyI	GAGTC	6 cut(s)	92, 127, 146, 275, 445, 503
MmeI	TCCRAC	2 cut(s)	120, 183
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	270
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	234
NdeII	GATC	3 cut(s)	20, 600, 609
NlaIII	CATG	3 cut(s)	145, 259, 334
PagI	TCATGA	1 cut(s)	141
PciSI	GCTCTTC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	4 cut(s)	382, 422, 476, 482
PflFI	GACNNNGTC	2 cut(s)	400, 454
PkrI	GCNGC	1 cut(s)	413
PleI	GAGTC	6 cut(s)	92, 127, 146, 275, 445, 502
PpsI	GAGTC	6 cut(s)	92, 127, 146, 275, 445, 502
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	429, 456
PsuI	RGATCY	1 cut(s)	600
PsyI	GACNNNGTC	2 cut(s)	400, 454
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
SalI	GTCGAC	1 cut(s)	496
SapI	GCTCTTC	1 cut(s)	421
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	412
Sau3AI	GATC	3 cut(s)	20, 600, 609
Sau96I	GGNCC	2 cut(s)	429, 456
SchI	GAGTC	6 cut(s)	92, 127, 146, 275, 445, 503
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	7 cut(s)	73, 82, 92, 183, 188, 222, 300
SfaNI	GCATC	2 cut(s)	35, 309
SinI	GGWCC	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	4 cut(s)	271, 300, 350, 519
SsiI	CCGC	3 cut(s)	205, 412, 573
SspMI	CTAG	2 cut(s)	386, 408
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	4 cut(s)	249, 400, 563, 642
TaqI	TCGA	4 cut(s)	120, 425, 497, 623
TaqII	GACCGA	1 cut(s)	444
TasI	AATT	4 cut(s)	271, 300, 350, 519
TauI	GCSGC	1 cut(s)	414
TfiI	GAWTC	4 cut(s)	382, 422, 476, 482
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	405
TspDTI	ATGAA	2 cut(s)	158, 347
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	405
Tth111I	GACNNNGTC	2 cut(s)	400, 454
VpaK11BI	GGWCC	1 cut(s)	456
XapI	RAATTY	1 cut(s)	350
XbaI	TCTAGA	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	2 cut(s)	386, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.