Rmu_co8449883.1_g000001

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8449883.1
OG0024455
Physical Location & Seq
Reverse (-)
643 .. 1690
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8449883.1_g000001.1.cds

Sequence Viewer

Length: 645 bp
ttttttttttccaggtttttgtggaggaagaatgcaacttttgcaatttctagacattataagcgctttgatgtgtttacggaagctgaggcaaataaagttgctggaaaatatgacaatggctctattgactttcaggttgaattttacaaaaaggaaggtttgaccccatattctgaggcaaaacttcccattacaagtgatgttcccgaaggatgtgtaataataagggagcatgtccctatcagcaacctcttcacttgtctttggttcaatgaagttgatcgttttacttccagggaccaaattagtttttcaactgtcagagatcacattacggcaaagacaaactggactatcaatatgttccttgactgtgaaaggcgcaatttcgtagttcagaaataccataaagatgtattagagcacatggctcctcatattcctgttgctgctcttccaccaccactaccgccatcaccgccaccaccagctttgagtaatgaaccaccagtcaaaccagttgaaacggcgcctgaaaggccagtaaggaagatccaaccagggcgccggagagaaaggaggcctggttccagacgtcaccgcaaagttattaccggaaatagagacactgatacaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616

Protein Analysis

214

Amino Acids

24.84

Weight (kDa)

9.64

Isoelectric Point (pI)

62.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024455)

Species Orthologous Gene IDs
malus_domestica MD05G1338900.v1.1
pyrus_communis pycom10g24580
rosa_multiflora Rmu_co8449883.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 60
AatII GACGTC 1 cut(s) 601
AccB1I GGYRCC 2 cut(s) 532, 567
AciI CCGC 3 cut(s) 473, 482, 604
AclWI GGATC 1 cut(s) 550
AcsI RAATTY 1 cut(s) 143
AcyI GRCGYC 3 cut(s) 533, 568, 598
AfeI AGCGCT 1 cut(s) 65
AgsI TTSAA 4 cut(s) 143, 274, 318, 527
AjnI CCWGG 4 cut(s) 11, 296, 562, 586
AloI GAACNNNNNNTCC 2 cut(s) 574, 606
AluBI AGCT 2 cut(s) 86, 494
AluI AGCT 2 cut(s) 86, 494
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 1 cut(s) 621
AlwI GGATC 1 cut(s) 550
Aor51HI AGCGCT 1 cut(s) 65
AoxI GGCC 2 cut(s) 542, 584
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 4 cut(s) 66, 387, 535, 570
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 471, 593
AvaII GGWCC 1 cut(s) 301
BanI GGYRCC 2 cut(s) 532, 567
Bbv12I GWGCWC 1 cut(s) 429
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 439
BccI CCATC 1 cut(s) 484
BceAI ACGGC 2 cut(s) 354, 546
BciT130I CCWGG 4 cut(s) 13, 298, 564, 588
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 1 cut(s) 51
BfoI RGCGCY 3 cut(s) 67, 536, 571
BglI GCCNNNNNGGC 1 cut(s) 541
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 4 cut(s) 13, 298, 564, 588
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 5 cut(s) 302, 435, 534, 569, 592
BmrFI CCNGG 4 cut(s) 13, 298, 564, 588
Bpu10I CCTNAGC 1 cut(s) 87
BsaHI GRCGYC 3 cut(s) 533, 568, 598
BsaJI CCNNGG 2 cut(s) 297, 563
BsaWI WCCGGW 1 cut(s) 617
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bse1I ACTGG 4 cut(s) 356, 512, 521, 545
BseBI CCWGG 4 cut(s) 13, 298, 564, 588
BseDI CCNNGG 2 cut(s) 297, 563
BseGI GGATG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 78, 168
BseNI ACTGG 4 cut(s) 356, 512, 521, 545
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 1 cut(s) 439
BshFI GGCC 2 cut(s) 544, 586
BshNI GGYRCC 2 cut(s) 532, 567
BsiHKAI GWGCWC 1 cut(s) 429
BsiSI CCGG 2 cut(s) 571, 618
BslFI GGGAC 2 cut(s) 224, 314
BsmAI GTCTC 1 cut(s) 621
BsmFI GGGAC 2 cut(s) 224, 314
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 2 cut(s) 544, 586
Bsp1286I GDGCHC 1 cut(s) 429
Bsp143I GATC 3 cut(s) 283, 328, 555
BspACI CCGC 3 cut(s) 473, 482, 604
BspANI GGCC 2 cut(s) 544, 586
BspCNI CTCAG 2 cut(s) 79, 169
BspLI GGNNCC 5 cut(s) 302, 435, 534, 569, 592
BspPI GGATC 1 cut(s) 550
BspQI GCTCTTC 1 cut(s) 462
BspT107I GGYRCC 2 cut(s) 532, 567
BsrI ACTGG 4 cut(s) 356, 512, 521, 545
BssECI CCNNGG 2 cut(s) 297, 563
BssMI GATC 3 cut(s) 283, 328, 555
BssNI GRCGYC 3 cut(s) 533, 568, 598
Bst2UI CCWGG 4 cut(s) 13, 298, 564, 588
Bst4CI ACNGT 2 cut(s) 322, 377
Bst6I CTCTTC 2 cut(s) 260, 462
BstACI GRCGYC 3 cut(s) 533, 568, 598
BstAPI GCANNNNNTGC 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 87, 177
BstF5I GGATG 1 cut(s) 221
BstH2I RGCGCY 3 cut(s) 67, 536, 571
BstHHI GCGC 4 cut(s) 66, 387, 535, 570
BstKTI GATC 3 cut(s) 286, 331, 558
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 3 cut(s) 283, 328, 555
BstMWI GCNNNNNNNGC 3 cut(s) 41, 481, 541
BstNI CCWGG 4 cut(s) 13, 298, 564, 588
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 4 cut(s) 11, 296, 562, 586
BstV1I GCAGC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 555
BstYI RGATCY 1 cut(s) 555
BsuRI GGCC 2 cut(s) 544, 586
BtsCI GGATG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 630
CfoI GCGC 4 cut(s) 66, 387, 535, 570
Cfr13I GGNCC 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 477, 512
CviAII CATG 2 cut(s) 236, 430
CviJI RGCY 6 cut(s) 86, 123, 434, 494, 544, 586
CviKI_1 RGCY 6 cut(s) 86, 123, 434, 494, 544, 586
DdeI CTNAG 2 cut(s) 87, 177
DinI GGCGCC 2 cut(s) 534, 569
DpnI GATC 3 cut(s) 285, 330, 557
DpnII GATC 3 cut(s) 283, 328, 555
Eam1104I CTCTTC 2 cut(s) 260, 462
EarI CTCTTC 2 cut(s) 260, 462
Eco147I AGGCCT 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 301
Eco47III AGCGCT 1 cut(s) 65
EcoRII CCWGG 4 cut(s) 11, 296, 562, 586
EgeI GGCGCC 2 cut(s) 534, 569
EheI GGCGCC 2 cut(s) 534, 569
FaeI CATG 2 cut(s) 239, 433
FaiI YATR 8 cut(s) 60, 114, 172, 237, 365, 411, 431, 441
FaqI GGGAC 2 cut(s) 224, 314
FatI CATG 2 cut(s) 235, 429
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 1 cut(s) 51
GlaI GCGC 4 cut(s) 65, 386, 534, 569
GluI GCNGC 1 cut(s) 453
HaeII RGCGCY 3 cut(s) 67, 536, 571
HaeIII GGCC 2 cut(s) 544, 586
HapII CCGG 2 cut(s) 571, 618
HhaI GCGC 4 cut(s) 66, 387, 535, 570
Hin1I GRCGYC 3 cut(s) 533, 568, 598
Hin1II CATG 2 cut(s) 239, 433
Hin6I GCGC 4 cut(s) 64, 385, 533, 568
HinP1I GCGC 4 cut(s) 64, 385, 533, 568
HpaII CCGG 2 cut(s) 571, 618
HphI GGTGA 2 cut(s) 471, 593
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 3 cut(s) 178, 326, 402
Hpy188III TCNNGA 3 cut(s) 51, 209, 594
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 152, 206
HpyCH4III ACNGT 2 cut(s) 322, 377
HpyCH4IV ACGT 1 cut(s) 598
HpyCH4V TGCA 2 cut(s) 35, 44
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 481, 541
HpyF3I CTNAG 2 cut(s) 87, 177
HpySE526I ACGT 1 cut(s) 598
Hsp92I GRCGYC 3 cut(s) 533, 568, 598
Hsp92II CATG 2 cut(s) 239, 433
HspAI GCGC 4 cut(s) 64, 385, 533, 568
KasI GGCGCC 2 cut(s) 532, 567
Kzo9I GATC 3 cut(s) 283, 328, 555
LguI GCTCTTC 1 cut(s) 462
LmnI GCTCC 2 cut(s) 232, 439
Lsp1109I GCAGC 1 cut(s) 439
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 1 cut(s) 599
MalI GATC 3 cut(s) 285, 330, 557
MboI GATC 3 cut(s) 283, 328, 555
MboII GAAGA 4 cut(s) 40, 247, 449, 565
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 1 cut(s) 429
MluCI AATT 5 cut(s) 45, 143, 306, 388, 640
Mly113I GGCGCC 2 cut(s) 533, 568
MmeI TCCRAC 1 cut(s) 583
MnlI CCTC 6 cut(s) 18, 82, 172, 263, 447, 576
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 2 cut(s) 571, 618
MspR9I CCNGG 4 cut(s) 13, 298, 564, 588
Mva1269I GAATGC 1 cut(s) 37
MvaI CCWGG 4 cut(s) 13, 298, 564, 588
MwoI GCNNNNNNNGC 3 cut(s) 41, 481, 541
NarI GGCGCC 2 cut(s) 533, 568
NdeII GATC 3 cut(s) 283, 328, 555
NlaIII CATG 2 cut(s) 239, 433
NlaIV GGNNCC 5 cut(s) 302, 435, 534, 569, 592
NmuCI GTSAC 1 cut(s) 599
NspI RCATGY 1 cut(s) 239
PceI AGGCCT 1 cut(s) 586
PciSI GCTCTTC 1 cut(s) 462
PctI GAATGC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 454
PluTI GGCGCC 2 cut(s) 536, 571
PsiI TTATAA 1 cut(s) 60
Psp6I CCWGG 4 cut(s) 11, 296, 562, 586
PspGI CCWGG 4 cut(s) 11, 296, 562, 586
PspN4I GGNNCC 5 cut(s) 302, 435, 534, 569, 592
PspPI GGNCC 1 cut(s) 301
PsuI RGATCY 1 cut(s) 555
RseI CAYNNNNRTG 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 462
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 3 cut(s) 283, 328, 555
Sau96I GGNCC 1 cut(s) 301
ScrFI CCNGG 4 cut(s) 13, 298, 564, 588
SduI GDGCHC 1 cut(s) 429
SetI ASST 7 cut(s) 17, 88, 141, 163, 255, 496, 601
SfoI GGCGCC 2 cut(s) 534, 569
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 414
Sse9I AATT 5 cut(s) 45, 143, 306, 388, 640
SseBI AGGCCT 1 cut(s) 586
SsiI CCGC 3 cut(s) 473, 482, 604
SspDI GGCGCC 2 cut(s) 532, 567
SspMI CTAG 1 cut(s) 51
StuI AGGCCT 1 cut(s) 586
StyD4I CCNGG 4 cut(s) 11, 296, 562, 586
TaaI ACNGT 2 cut(s) 322, 377
TaiI ACGT 1 cut(s) 601
TasI AATT 5 cut(s) 45, 143, 306, 388, 640
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 2 cut(s) 291, 519
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 143
XbaI TCTAGA 1 cut(s) 50
XceI RCATGY 1 cut(s) 239
XspI CTAG 1 cut(s) 51
ZraI GACGTC 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.