Rmu_co8450959.1_g000001

PHD finger protein MALE

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8450959.1
Physical Location & Seq
Forward (+)
1 .. 1703
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8450959.1_g000001.1.cds

Sequence Viewer

Length: 1346 bp
gatgggggaaccatttggtctccaagaagagatatgtgttctcgattcctgggagccagaactggcctaatctgagagggtttgaaatcgcggatggctttaatctttctgctcaagtccacggtaatgggtttggccacctcctttggatcgaaaggaatgaggttgttagtgggacagagatcctcaatctctgggaaacgctctgcttttatcttcaagtgagagcaatttctgttaaggatgaagcagccattaggaggagcaatgatttcaatattcatctgaggcttgtccggggaatggcctatggtggtcttacttggttctgtcgatatgattatcaattcactaaagggatttttggggttgggcaagcagattatgaaggcgcacttgacatcctggtcgctgcgagtttaaatgatgtctaccataacctcagaagccagaatctgaaagtttatatccagctgaggaaaattgtaatgcgttgccttaatgcaaggtgtgaaaaggatgaagccttggatacgttgagtggtgttctgcaatttttactagattgccgtgagttttgcaagaaggttcccactgctaggagagtgtacctatctgatctaaattcacagaattggaaccctgtgcgaatttccaatgcagtggatgacgttgttgagattttgcgggagtggaaaaatggacatcctgctgttggcatgtctcgagaggcactgcgagcagagactgttcgccgcagagtgaagactacaggtttggtggaccatgttatatcaaaactaaagaatgtgatcgttgaaactgtacgagggttctttttgataagctgggaaatgaagctccataaatactcagtgatgtccattcctaatccatctctgctgccatctttagaaaaggttgaacacgatattgagtttgtgtacagagatattgtgcttcctagttggccggctaatgtggtgttaaggtctgtttacttcatgaaggagttcccacaataccgtgcaaagaatactctgtcatttacctgccaaataatgcctccctggaatgggtataaagagtattccaaggaaatcgctgacaagttacctcctcctattgtgctggcactttcacctcaagctactattttcgagctcaagaaggctgctgagaaagcattaagagagacatatataatcactcgaaatgtggaggttatggaagttaaatgtgaaggggatagcttggatgataatcagcttgtttctacaaatggatttggtagtaagctgggattgataggggggagaattgattctgatccaagcttcagatat

Protein Analysis

448

Amino Acids

51.29

Weight (kDa)

8.84

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025498)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8450959.1_g000001 Rmu_sc0000907.1_g000026
rosa_samantha Rh1DG155800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 406
Acc36I ACCTGC 1 cut(s) 1060
AccI GTMKAC 1 cut(s) 431
AccII CGCG 1 cut(s) 91
AciI CCGC 3 cut(s) 91, 687, 756
AclWI GGATC 3 cut(s) 157, 177, 1324
AcoI YGGCCR 2 cut(s) 135, 970
AcsI RAATTY 2 cut(s) 624, 650
AcuI CTGAAG 1 cut(s) 1323
AfaI GTAC 3 cut(s) 610, 827, 946
AfiI CCNNNNNNNGG 6 cut(s) 260, 303, 599, 715, 1075, 1076
AgsI TTSAA 5 cut(s) 85, 220, 276, 820, 925
AjnI CCWGG 3 cut(s) 48, 404, 1069
AluBI AGCT 9 cut(s) 474, 848, 861, 1150, 1164, 1253, 1269, 1299, 1337
AluI AGCT 9 cut(s) 474, 848, 861, 1150, 1164, 1253, 1269, 1299, 1337
Alw21I GWGCWC 1 cut(s) 1166
Alw26I GTCTC 4 cut(s) 24, 728, 739, 1189
AlwI GGATC 3 cut(s) 157, 177, 1324
AlwNI CAGNNNCTG 2 cut(s) 456, 748
Ama87I CYCGRG 1 cut(s) 725
AoxI GGCC 4 cut(s) 64, 135, 305, 970
ApeKI GCWGC 4 cut(s) 250, 412, 903, 1174
ApoI RAATTY 2 cut(s) 624, 650
ArsI GACNNNNNNTTYG 2 cut(s) 759, 791
Asp700I GAANNNNTTC 2 cut(s) 1012, 1323
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 783
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 1133
AvaI CYCGRG 1 cut(s) 725
AvaII GGWCC 1 cut(s) 783
BalI TGGCCA 1 cut(s) 137
BanII GRGCYC 1 cut(s) 1166
BbsI GAAGAC 1 cut(s) 772
Bbv12I GWGCWC 1 cut(s) 1166
BbvCI CCTCAGC 1 cut(s) 475
BbvI GCAGC 4 cut(s) 262, 399, 890, 1161
BccI CCATC 3 cut(s) 88, 903, 915
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 3 cut(s) 50, 406, 1071
BciVI GTATCC 1 cut(s) 525
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 4 cut(s) 24, 728, 739, 1189
BfaI CTAG 3 cut(s) 562, 599, 965
BfmI CTRYAG 1 cut(s) 770
BfuAI ACCTGC 1 cut(s) 1060
BfuI GTATCC 1 cut(s) 525
BisI GCNGC 5 cut(s) 251, 413, 756, 904, 1175
BlsI GCNGC 5 cut(s) 252, 414, 757, 905, 1176
Bme1390I CCNGG 4 cut(s) 50, 298, 406, 1071
Bme18I GGWCC 1 cut(s) 783
BmeT110I CYCGRG 1 cut(s) 725
BmgT120I GGNCC 1 cut(s) 783
BmiI GGNNCC 4 cut(s) 10, 55, 590, 640
BmrFI CCNGG 4 cut(s) 50, 298, 406, 1071
BpiI GAAGAC 1 cut(s) 772
Bpu10I CCTNAGC 1 cut(s) 475
BpuEI CTTGAG 3 cut(s) 98, 1130, 1150
BpuMI CCSGG 1 cut(s) 298
BsaBI GATNNNNATC 2 cut(s) 1262, 1328
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 6 cut(s) 49, 120, 297, 527, 1069, 1094
Bsc4I CCNNNNNNNGG 6 cut(s) 260, 303, 599, 715, 1075, 1076
Bse118I RCCGGY 1 cut(s) 972
Bse1I ACTGG 1 cut(s) 67
Bse3DI GCAATG 1 cut(s) 273
Bse8I GATNNNNATC 2 cut(s) 1262, 1328
BseBI CCWGG 3 cut(s) 50, 406, 1071
BseDI CCNNGG 6 cut(s) 49, 120, 297, 527, 1069, 1094
BseGI GGATG 7 cut(s) 99, 249, 401, 525, 672, 705, 1263
BseJI GATNNNNATC 2 cut(s) 1262, 1328
BseLI CCNNNNNNNGG 6 cut(s) 260, 303, 599, 715, 1075, 1076
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 6 cut(s) 64, 277, 456, 466, 887, 1169
BseNI ACTGG 1 cut(s) 67
BseRI GAGGAG 2 cut(s) 276, 1109
BseXI GCAGC 4 cut(s) 262, 399, 890, 1161
BseYI CCCAGC 2 cut(s) 848, 1299
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 4 cut(s) 66, 137, 307, 972
BsiHKAI GWGCWC 1 cut(s) 1166
BsiHKCI CYCGRG 1 cut(s) 725
BsiSI CCGG 2 cut(s) 297, 973
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 6 cut(s) 260, 303, 599, 715, 1075, 1076
BsmAI GTCTC 4 cut(s) 24, 728, 739, 1189
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 4 cut(s) 66, 137, 307, 972
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 725
Bsp1286I GDGCHC 1 cut(s) 1166
Bsp1407I TGTACA 1 cut(s) 944
Bsp143I GATC 5 cut(s) 149, 182, 618, 812, 1329
BspACI CCGC 3 cut(s) 91, 687, 756
BspANI GGCC 4 cut(s) 66, 137, 307, 972
BspCNI CTCAG 6 cut(s) 65, 278, 455, 467, 886, 1170
BspFNI CGCG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 1004
BspLI GGNNCC 4 cut(s) 10, 55, 590, 640
BspMI ACCTGC 1 cut(s) 1060
BspPI GGATC 3 cut(s) 157, 177, 1324
BspTNI GGTCTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 972
BsrGI TGTACA 1 cut(s) 944
BsrI ACTGG 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 972
BssECI CCNNGG 6 cut(s) 49, 120, 297, 527, 1069, 1094
BssMI GATC 5 cut(s) 149, 182, 618, 812, 1329
BssT1I CCWWGG 2 cut(s) 527, 1094
Bst2UI CCWGG 3 cut(s) 50, 406, 1071
Bst4CI ACNGT 4 cut(s) 124, 750, 825, 1027
Bst6I CTCTTC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 944
BstC8I GCNNGC 4 cut(s) 377, 740, 974, 1133
BstDEI CTNAG 6 cut(s) 73, 286, 442, 475, 873, 1178
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 7 cut(s) 99, 249, 401, 525, 672, 705, 1263
BstFNI CGCG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 5 cut(s) 152, 185, 621, 815, 1332
BstMAI GTCTC 4 cut(s) 24, 728, 739, 1189
BstMBI GATC 5 cut(s) 149, 182, 618, 812, 1329
BstMWI GCNNNNNNNGC 2 cut(s) 739, 1183
BstNI CCWGG 3 cut(s) 50, 406, 1071
BstNSI RCATGY 1 cut(s) 723
BstSCI CCNGG 4 cut(s) 48, 296, 404, 1069
BstSFI CTRYAG 1 cut(s) 770
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 4 cut(s) 262, 399, 890, 1161
BstV2I GAAGAC 1 cut(s) 772
BstX2I RGATCY 1 cut(s) 182
BstXI CCANNNNNNTGG 2 cut(s) 127, 663
BstYI RGATCY 1 cut(s) 182
BsuI GTATCC 1 cut(s) 525
BsuRI GGCC 4 cut(s) 66, 137, 307, 972
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 7 cut(s) 99, 249, 401, 525, 672, 705, 1263
BtsI GCAGTG 3 cut(s) 593, 668, 733
BtsIMutI CAGTG 4 cut(s) 593, 668, 733, 881
BveI ACCTGC 1 cut(s) 1060
Cac8I GCNNGC 4 cut(s) 377, 740, 974, 1133
CaiI CAGNNNCTG 2 cut(s) 456, 748
CciI TCATGA 1 cut(s) 1004
CfoI GCGC 1 cut(s) 394
Cfr10I RCCGGY 1 cut(s) 972
Cfr13I GGNCC 1 cut(s) 783
Csp6I GTAC 3 cut(s) 609, 826, 945
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 3 cut(s) 720, 787, 1005
CviQI GTAC 3 cut(s) 609, 826, 945
DdeI CTNAG 6 cut(s) 73, 286, 442, 475, 873, 1178
DpnI GATC 5 cut(s) 151, 184, 620, 814, 1331
DpnII GATC 5 cut(s) 149, 182, 618, 812, 1329
DraI TTTAAA 1 cut(s) 422
DrdI GACNNNNNNGTC 1 cut(s) 406
DseDI GACNNNNNNGTC 1 cut(s) 406
EaeI YGGCCR 2 cut(s) 135, 970
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 1164
Eco130I CCWWGG 2 cut(s) 527, 1094
Eco24I GRGCYC 1 cut(s) 1166
Eco31I GGTCTC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 783
Eco53kI GAGCTC 1 cut(s) 1164
Eco57I CTGAAG 1 cut(s) 1323
Eco88I CYCGRG 1 cut(s) 725
EcoICRI GAGCTC 1 cut(s) 1164
EcoRII CCWGG 3 cut(s) 48, 404, 1069
EcoT14I CCWWGG 2 cut(s) 527, 1094
EcoT38I GRGCYC 1 cut(s) 1166
ErhI CCWWGG 2 cut(s) 527, 1094
FaeI CATG 3 cut(s) 723, 790, 1008
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 1 cut(s) 189
FatI CATG 3 cut(s) 719, 786, 1004
FauI CCCGC 1 cut(s) 680
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 5 cut(s) 251, 413, 756, 904, 1175
FokI GGATG 7 cut(s) 106, 256, 388, 532, 679, 692, 1270
FriOI GRGCYC 1 cut(s) 1166
Fsp4HI GCNGC 5 cut(s) 251, 413, 756, 904, 1175
FspBI CTAG 3 cut(s) 562, 599, 965
GlaI GCGC 1 cut(s) 393
GluI GCNGC 5 cut(s) 251, 413, 756, 904, 1175
GsaI CCCAGC 2 cut(s) 852, 1303
HaeIII GGCC 4 cut(s) 66, 137, 307, 972
HapII CCGG 2 cut(s) 297, 973
HhaI GCGC 1 cut(s) 394
Hin1II CATG 3 cut(s) 723, 790, 1008
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HindIII AAGCTT 1 cut(s) 1335
HinfI GANTC 3 cut(s) 45, 453, 1324
HpaII CCGG 2 cut(s) 297, 973
HphI GGTGA 1 cut(s) 1133
Hpy166II GTNNAC 6 cut(s) 120, 432, 609, 783, 945, 999
Hpy188I TCNGA 7 cut(s) 74, 287, 445, 458, 618, 1329, 1342
Hpy188III TCNNGA 5 cut(s) 42, 725, 727, 1005, 1167
Hpy8I GTNNAC 6 cut(s) 120, 432, 609, 783, 945, 999
HpyAV CCTTC 5 cut(s) 382, 579, 1002, 1164, 1237
HpyCH4III ACNGT 4 cut(s) 124, 750, 825, 1027
HpyCH4IV ACGT 2 cut(s) 535, 671
HpyCH4V TGCA 5 cut(s) 505, 552, 581, 661, 1030
HpyF10VI GCNNNNNNNGC 2 cut(s) 739, 1183
HpyF3I CTNAG 6 cut(s) 73, 286, 442, 475, 873, 1178
HpySE526I ACGT 2 cut(s) 535, 671
Hsp92II CATG 3 cut(s) 723, 790, 1008
HspAI GCGC 1 cut(s) 392
KroI GCCGGC 1 cut(s) 972
KroNI GCCGGC 1 cut(s) 974
Kzo9I GATC 5 cut(s) 149, 182, 618, 812, 1329
LmnI GCTCC 3 cut(s) 53, 263, 866
Lsp1109I GCAGC 4 cut(s) 262, 399, 890, 1161
MaeI CTAG 3 cut(s) 562, 599, 965
MaeII ACGT 2 cut(s) 535, 671
MaeIII GTNAC 1 cut(s) 1112
MalI GATC 5 cut(s) 151, 184, 620, 814, 1331
MboI GATC 5 cut(s) 149, 182, 618, 812, 1329
MboII GAAGA 3 cut(s) 39, 208, 777
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 1166
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 8 cut(s) 230, 346, 482, 553, 624, 633, 650, 1319
MluNI TGGCCA 1 cut(s) 137
Mox20I TGGCCA 1 cut(s) 137
MroNI GCCGGC 1 cut(s) 972
MroXI GAANNNNTTC 2 cut(s) 1012, 1323
MscI TGGCCA 1 cut(s) 137
MseI TTAA 7 cut(s) 101, 239, 421, 500, 988, 1189, 1235
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 474
MspI CCGG 2 cut(s) 297, 973
MspR9I CCNGG 4 cut(s) 50, 298, 406, 1071
MvaI CCWGG 3 cut(s) 50, 406, 1071
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 739, 1183
NaeI GCCGGC 1 cut(s) 974
NciI CCSGG 1 cut(s) 298
NdeII GATC 5 cut(s) 149, 182, 618, 812, 1329
NgoMIV GCCGGC 1 cut(s) 972
NlaIII CATG 3 cut(s) 723, 790, 1008
NlaIV GGNNCC 4 cut(s) 10, 55, 590, 640
NspI RCATGY 1 cut(s) 723
PaeR7I CTCGAG 1 cut(s) 725
PagI TCATGA 1 cut(s) 1004
PdiI GCCGGC 1 cut(s) 974
PdmI GAANNNNTTC 2 cut(s) 1012, 1323
PfeI GAWTC 3 cut(s) 45, 453, 1324
PkrI GCNGC 5 cut(s) 252, 414, 757, 905, 1176
Psp124BI GAGCTC 1 cut(s) 1166
Psp6I CCWGG 3 cut(s) 48, 404, 1069
PspFI CCCAGC 2 cut(s) 848, 1299
PspGI CCWGG 3 cut(s) 48, 404, 1069
PspN4I GGNNCC 4 cut(s) 10, 55, 590, 640
PspPI GGNCC 1 cut(s) 783
PstNI CAGNNNCTG 2 cut(s) 456, 748
PsuI RGATCY 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 474
RsaI GTAC 3 cut(s) 610, 827, 946
RsaNI GTAC 3 cut(s) 609, 826, 945
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 1166
SaqAI TTAA 7 cut(s) 101, 239, 421, 500, 988, 1189, 1235
SatI GCNGC 5 cut(s) 251, 413, 756, 904, 1175
Sau3AI GATC 5 cut(s) 149, 182, 618, 812, 1329
Sau96I GGNCC 1 cut(s) 783
ScrFI CCNGG 4 cut(s) 50, 298, 406, 1071
SduI GDGCHC 1 cut(s) 1166
SfcI CTRYAG 1 cut(s) 770
Sfr274I CTCGAG 1 cut(s) 725
SinI GGWCC 1 cut(s) 783
SlaI CTCGAG 1 cut(s) 725
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 4 cut(s) 113, 725, 1145, 1165
SmoI CTYRAG 4 cut(s) 113, 725, 1145, 1165
Sse9I AATT 8 cut(s) 230, 346, 482, 553, 624, 633, 650, 1319
SsiI CCGC 3 cut(s) 91, 687, 756
SspI AATATT 1 cut(s) 279
SspMI CTAG 3 cut(s) 562, 599, 965
SstI GAGCTC 1 cut(s) 1166
StyD4I CCNGG 4 cut(s) 48, 296, 404, 1069
StyI CCWWGG 2 cut(s) 527, 1094
TaaI ACNGT 4 cut(s) 124, 750, 825, 1027
TaiI ACGT 2 cut(s) 538, 674
TaqI TCGA 6 cut(s) 43, 152, 333, 726, 1160, 1212
TasI AATT 8 cut(s) 230, 346, 482, 553, 624, 633, 650, 1319
TatI WGTACW 1 cut(s) 944
TauI GCSGC 1 cut(s) 758
TfiI GAWTC 3 cut(s) 45, 453, 1324
Tru1I TTAA 7 cut(s) 101, 239, 421, 500, 988, 1189, 1235
Tru9I TTAA 7 cut(s) 101, 239, 421, 500, 988, 1189, 1235
TscAI CASTG 4 cut(s) 600, 668, 740, 881
TseI GCWGC 4 cut(s) 250, 412, 903, 1174
TspDTI ATGAA 7 cut(s) 260, 271, 401, 536, 871, 993, 1021
TspRI CASTG 4 cut(s) 600, 668, 740, 881
VpaK11BI GGWCC 1 cut(s) 783
XapI RAATTY 2 cut(s) 624, 650
XceI RCATGY 1 cut(s) 723
XhoI CTCGAG 1 cut(s) 725
XmiI GTMKAC 1 cut(s) 431
XmnI GAANNNNTTC 2 cut(s) 1012, 1323
XspI CTAG 3 cut(s) 562, 599, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.