Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0025498

Physical Location & Seq

Genomic Coordinates Reverse (-)

32460183 .. 32462886

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG155800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCCTATGGTGGTCTTACTTGGTTCTGTCGATATGATTATCAATTCACTAAAGGGATTTTTGGGGTTGGGCAAGCAGAATATGAAGGCGCACTTGACATCCTGGTCGCTGCGAGTTTAAATGATGTCTACCATAACCTCAGAAGCCAGAATCTGAAAGTTTATATCCAGCTGAGGAAAATTGTAATGCGTTGCCTTAATGCAAGGTGTGAAAAGGAAGAAGCCTTGGATACGTTGAGTGGTGTTCTGCAATTTTTACTAGATTGCCGTGAGTTTTGCAAGAAGGTTCCCACTGCTAGGAGAGTGTACCTATCTGATCTAAATTCACAGAATTGGAACCCTGTGCGAATTTCCAATGCAGTGGATGACGTTGTTGAGATTTTGCGGGAGTGGAAAAATGGACATCCTGCTGTTGGCATGTCTCGAGAGGCACTGCGAGCAGAGACTGTTCGCCGCAGAGTGAAGACTACAGGTTTGGTGGACCATGTTATATCAAAACTAAAGAATGTGATCGTTGAAACTGTACAAGGGTTCTTTTTGATAAGCTGGGAAATGAAGCTCCATAAATACTCAGTGATGTCCATTCCTAATCCATCTCTGCTGCCATCTTTAGAAAAGGTTGAACACGATATTGAGTTTGTGTACAGAGATATTGTGCTTCCTAGTTGGCCGGCTAATGTGGTGTTAAGGTCTGTTTACTTCATGAAGGAGTTCCCACAATACCATGCAAAGAATACTCTGTCATTTACCTGCCAAATAATGCCTCCCTGGAATGGGTATAAAGAGTATTCCAAGGAAATCGCTGACAAGTTACCTCCTCCTATTGTGCTGGCACTTTCACCTCAAGCTACTATTTTCGAGCTCAAGAAGGCTGCTGAGAAAGCATTAAGAGAGACATATATAATCACTCGAAATGTGGAGGTTATGGAAGTTAAATGTGAAGGGGATAGCTTCGATGATAATCAGCTTGTTTCTACAAATGGATTTGGTAGTAAGCTGGGATTGATAGGGGGGAGAATTGATTCTGATCCAAGCTTCAGATATGAAGGTGGACAATACACAAAAGTGGTTAAGTGCATATGTGGGACTACTGCTGATGATGGAGAGGACATGATACGGTGTAATGTCTGTCTTACTTGGGAGCACAAGATGTGCAACAGTGTAGATTCAACCGTGTTGGTGCATACATGTGTGTCATGCAAGAAGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

403

Amino Acids

45.81

Weight (kDa)

7.85

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	112 - 174	4.9e-09	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	245 - 326	7.9e-14	At1g33420-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025498)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8450959.1_g000001 Rmu_sc0000907.1_g000026
rosa_samantha	Rh1DG155800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	2 cut(s)	385, 454
AclWI	GGATC	1 cut(s)	1022
AcoI	YGGCCR	1 cut(s)	668
AcsI	RAATTY	2 cut(s)	322, 348
AcuI	CTGAAG	1 cut(s)	1021
AfaI	GTAC	3 cut(s)	308, 525, 644
AfiI	CCNNNNNNNGG	4 cut(s)	297, 413, 773, 774
AflIII	ACRYGT	1 cut(s)	1187
AgsI	TTSAA	3 cut(s)	518, 623, 1170
AjnI	CCWGG	2 cut(s)	102, 767
AleI	CACNNNNGTG	1 cut(s)	1064
AluBI	AGCT	9 cut(s)	172, 546, 559, 848, 862, 951, 967, 997, 1035
AluI	AGCT	9 cut(s)	172, 546, 559, 848, 862, 951, 967, 997, 1035
Alw21I	GWGCWC	2 cut(s)	864, 1146
Alw26I	GTCTC	3 cut(s)	426, 437, 887
AlwI	GGATC	1 cut(s)	1022
AlwNI	CAGNNNCTG	2 cut(s)	154, 446
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	2 cut(s)	3, 668
ApeKI	GCWGC	3 cut(s)	110, 601, 872
ApoI	RAATTY	2 cut(s)	322, 348
ArsI	GACNNNNNNTTYG	2 cut(s)	457, 489
Asp700I	GAANNNNTTC	2 cut(s)	710, 1021
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	831
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	864
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	2 cut(s)	864, 1146
BbvCI	CCTCAGC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	97, 588, 859
BccI	CCATC	3 cut(s)	601, 613, 1094
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	2 cut(s)	104, 769
BciVI	GTATCC	1 cut(s)	223
BcoDI	GTCTC	3 cut(s)	426, 437, 887
BfaI	CTAG	3 cut(s)	260, 297, 663
BfmI	CTRYAG	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	758
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	4 cut(s)	111, 454, 602, 873
BlsI	GCNGC	4 cut(s)	112, 455, 603, 874
Bme1390I	CCNGG	2 cut(s)	104, 769
Bme18I	GGWCC	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	2 cut(s)	288, 338
BmrFI	CCNGG	2 cut(s)	104, 769
BpiI	GAAGAC	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	828, 848
BsaBI	GATNNNNATC	2 cut(s)	960, 1026
BsaJI	CCNNGG	3 cut(s)	225, 767, 792
Bsc4I	CCNNNNNNNGG	4 cut(s)	297, 413, 773, 774
Bse118I	RCCGGY	1 cut(s)	670
Bse8I	GATNNNNATC	2 cut(s)	960, 1026
BseBI	CCWGG	2 cut(s)	104, 769
BseDI	CCNNGG	3 cut(s)	225, 767, 792
BseGI	GGATG	3 cut(s)	99, 370, 403
BseJI	GATNNNNATC	2 cut(s)	960, 1026
BseLI	CCNNNNNNNGG	4 cut(s)	297, 413, 773, 774
BseMII	CTCAG	4 cut(s)	154, 164, 585, 867
BseRI	GAGGAG	1 cut(s)	807
BseXI	GCAGC	3 cut(s)	97, 588, 859
BseYI	CCCAGC	2 cut(s)	546, 997
BshFI	GGCC	2 cut(s)	5, 670
BsiHKAI	GWGCWC	2 cut(s)	864, 1146
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	1 cut(s)	1099
BslI	CCNNNNNNNGG	4 cut(s)	297, 413, 773, 774
BsmAI	GTCTC	3 cut(s)	426, 437, 887
BsmFI	GGGAC	1 cut(s)	1099
BsnI	GGCC	2 cut(s)	5, 670
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	864, 1146
Bsp1407I	TGTACA	2 cut(s)	523, 642
Bsp143I	GATC	3 cut(s)	316, 510, 1027
BspACI	CCGC	2 cut(s)	385, 454
BspANI	GGCC	2 cut(s)	5, 670
BspCNI	CTCAG	4 cut(s)	153, 165, 584, 868
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	2 cut(s)	288, 338
BspMI	ACCTGC	1 cut(s)	758
BspPI	GGATC	1 cut(s)	1022
BsrFI	RCCGGY	1 cut(s)	670
BsrGI	TGTACA	2 cut(s)	523, 642
BssAI	RCCGGY	1 cut(s)	670
BssECI	CCNNGG	3 cut(s)	225, 767, 792
BssMI	GATC	3 cut(s)	316, 510, 1027
BssT1I	CCWWGG	2 cut(s)	225, 792
Bst2UI	CCWGG	2 cut(s)	104, 769
Bst4CI	ACNGT	5 cut(s)	448, 523, 1119, 1160, 1174
BstAUI	TGTACA	2 cut(s)	523, 642
BstC8I	GCNNGC	4 cut(s)	75, 438, 672, 831
BstDEI	CTNAG	4 cut(s)	140, 173, 571, 876
BstF5I	GGATG	3 cut(s)	99, 370, 403
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	319, 513, 1030
BstMAI	GTCTC	3 cut(s)	426, 437, 887
BstMBI	GATC	3 cut(s)	316, 510, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 881
BstNI	CCWGG	2 cut(s)	104, 769
BstNSI	RCATGY	2 cut(s)	421, 1191
BstSCI	CCNGG	2 cut(s)	102, 767
BstSFI	CTRYAG	1 cut(s)	468
BstV1I	GCAGC	3 cut(s)	97, 588, 859
BstV2I	GAAGAC	1 cut(s)	470
BstXI	CCANNNNNNTGG	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	5, 670
BtsCI	GGATG	3 cut(s)	99, 370, 403
BtsI	GCAGTG	3 cut(s)	291, 366, 431
BtsIMutI	CAGTG	5 cut(s)	291, 366, 431, 579, 1165
BveI	ACCTGC	1 cut(s)	758
Cac8I	GCNNGC	4 cut(s)	75, 438, 672, 831
CaiI	CAGNNNCTG	2 cut(s)	154, 446
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	481
Csp6I	GTAC	3 cut(s)	307, 524, 643
CviAII	CATG	7 cut(s)	418, 485, 703, 725, 1111, 1188, 1197
CviQI	GTAC	3 cut(s)	307, 524, 643
DdeI	CTNAG	4 cut(s)	140, 173, 571, 876
DpnI	GATC	3 cut(s)	318, 512, 1029
DpnII	GATC	3 cut(s)	316, 510, 1027
DraI	TTTAAA	1 cut(s)	120
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	668
Ecl136II	GAGCTC	1 cut(s)	862
Eco130I	CCWWGG	2 cut(s)	225, 792
Eco24I	GRGCYC	1 cut(s)	864
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	862
Eco57I	CTGAAG	1 cut(s)	1021
Eco88I	CYCGRG	1 cut(s)	423
EcoICRI	GAGCTC	1 cut(s)	862
EcoRII	CCWGG	2 cut(s)	102, 767
EcoT14I	CCWWGG	2 cut(s)	225, 792
EcoT38I	GRGCYC	1 cut(s)	864
ErhI	CCWWGG	2 cut(s)	225, 792
FaeI	CATG	7 cut(s)	421, 488, 706, 728, 1114, 1191, 1200
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	1 cut(s)	1099
FatI	CATG	7 cut(s)	417, 484, 702, 724, 1110, 1187, 1196
FauI	CCCGC	1 cut(s)	378
FauNDI	CATATG	1 cut(s)	1079
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	4 cut(s)	111, 454, 602, 873
FokI	GGATG	3 cut(s)	86, 377, 390
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	4 cut(s)	111, 454, 602, 873
FspBI	CTAG	3 cut(s)	260, 297, 663
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	4 cut(s)	111, 454, 602, 873
GsaI	CCCAGC	2 cut(s)	550, 1001
HaeIII	GGCC	2 cut(s)	5, 670
HapII	CCGG	1 cut(s)	671
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	7 cut(s)	421, 488, 706, 728, 1114, 1191, 1200
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	1033
HinfI	GANTC	3 cut(s)	151, 1022, 1166
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	1 cut(s)	831
Hpy166II	GTNNAC	6 cut(s)	130, 307, 481, 643, 697, 1052
Hpy188I	TCNGA	5 cut(s)	143, 156, 316, 1027, 1040
Hpy188III	TCNNGA	4 cut(s)	423, 425, 703, 865
Hpy8I	GTNNAC	6 cut(s)	130, 307, 481, 643, 697, 1052
HpyAV	CCTTC	7 cut(s)	80, 277, 700, 862, 935, 1040, 1198
HpyCH4III	ACNGT	5 cut(s)	448, 523, 1119, 1160, 1174
HpyCH4IV	ACGT	2 cut(s)	233, 369
HpyCH4V	TGCA	9 cut(s)	203, 250, 279, 359, 728, 1077, 1155, 1183, 1200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 881
HpyF3I	CTNAG	4 cut(s)	140, 173, 571, 876
HpySE526I	ACGT	2 cut(s)	233, 369
Hsp92II	CATG	7 cut(s)	421, 488, 706, 728, 1114, 1191, 1200
HspAI	GCGC	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	670
KroNI	GCCGGC	1 cut(s)	672
Kzo9I	GATC	3 cut(s)	316, 510, 1027
LmnI	GCTCC	2 cut(s)	564, 1141
Lsp1109I	GCAGC	3 cut(s)	97, 588, 859
MaeI	CTAG	3 cut(s)	260, 297, 663
MaeII	ACGT	2 cut(s)	233, 369
MaeIII	GTNAC	1 cut(s)	810
MalI	GATC	3 cut(s)	318, 512, 1029
MboI	GATC	3 cut(s)	316, 510, 1027
MboII	GAAGA	2 cut(s)	230, 475
MhlI	GDGCHC	2 cut(s)	864, 1146
MluCI	AATT	7 cut(s)	44, 180, 251, 322, 331, 348, 1017
MnlI	CCTC	9 cut(s)	149, 168, 421, 774, 825, 828, 852, 913, 1099
MroNI	GCCGGC	1 cut(s)	670
MroXI	GAANNNNTTC	2 cut(s)	710, 1021
MseI	TTAA	6 cut(s)	119, 198, 686, 887, 933, 1071
MslI	CAYNNNNRTG	2 cut(s)	1064, 1188
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	2 cut(s)	104, 769
MvaI	CCWGG	2 cut(s)	104, 769
MwoI	GCNNNNNNNGC	2 cut(s)	437, 881
NaeI	GCCGGC	1 cut(s)	672
NdeI	CATATG	1 cut(s)	1079
NdeII	GATC	3 cut(s)	316, 510, 1027
NgoMIV	GCCGGC	1 cut(s)	670
NlaIII	CATG	7 cut(s)	421, 488, 706, 728, 1114, 1191, 1200
NlaIV	GGNNCC	2 cut(s)	288, 338
NspI	RCATGY	2 cut(s)	421, 1191
OliI	CACNNNNGTG	1 cut(s)	1064
PaeR7I	CTCGAG	1 cut(s)	423
PagI	TCATGA	1 cut(s)	702
PciI	ACATGT	1 cut(s)	1187
PdiI	GCCGGC	1 cut(s)	672
PdmI	GAANNNNTTC	2 cut(s)	710, 1021
PfeI	GAWTC	3 cut(s)	151, 1022, 1166
PkrI	GCNGC	4 cut(s)	112, 455, 603, 874
PscI	ACATGT	1 cut(s)	1187
Psp124BI	GAGCTC	1 cut(s)	864
Psp6I	CCWGG	2 cut(s)	102, 767
PspFI	CCCAGC	2 cut(s)	546, 997
PspGI	CCWGG	2 cut(s)	102, 767
PspN4I	GGNNCC	2 cut(s)	288, 338
PspPI	GGNCC	1 cut(s)	481
PstNI	CAGNNNCTG	2 cut(s)	154, 446
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	3 cut(s)	308, 525, 644
RsaNI	GTAC	3 cut(s)	307, 524, 643
RseI	CAYNNNNRTG	2 cut(s)	1064, 1188
SacI	GAGCTC	1 cut(s)	864
SaqAI	TTAA	6 cut(s)	119, 198, 686, 887, 933, 1071
SatI	GCNGC	4 cut(s)	111, 454, 602, 873
Sau3AI	GATC	3 cut(s)	316, 510, 1027
Sau96I	GGNCC	1 cut(s)	481
ScrFI	CCNGG	2 cut(s)	104, 769
SduI	GDGCHC	2 cut(s)	864, 1146
SfcI	CTRYAG	1 cut(s)	468
Sfr274I	CTCGAG	1 cut(s)	423
SinI	GGWCC	1 cut(s)	481
SlaI	CTCGAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	2 cut(s)	1064, 1188
SmlI	CTYRAG	3 cut(s)	423, 843, 863
SmoI	CTYRAG	3 cut(s)	423, 843, 863
Sse9I	AATT	7 cut(s)	44, 180, 251, 322, 331, 348, 1017
SsiI	CCGC	2 cut(s)	385, 454
SspMI	CTAG	3 cut(s)	260, 297, 663
SstI	GAGCTC	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	102, 767
StyI	CCWWGG	2 cut(s)	225, 792
TaaI	ACNGT	5 cut(s)	448, 523, 1119, 1160, 1174
TaiI	ACGT	2 cut(s)	236, 372
TaqI	TCGA	5 cut(s)	31, 424, 858, 910, 954
TasI	AATT	7 cut(s)	44, 180, 251, 322, 331, 348, 1017
TatI	WGTACW	2 cut(s)	523, 642
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	3 cut(s)	151, 1022, 1166
Tru1I	TTAA	6 cut(s)	119, 198, 686, 887, 933, 1071
Tru9I	TTAA	6 cut(s)	119, 198, 686, 887, 933, 1071
TscAI	CASTG	5 cut(s)	298, 366, 438, 579, 1165
TseI	GCWGC	3 cut(s)	110, 601, 872
TspDTI	ATGAA	5 cut(s)	99, 569, 691, 719, 1059
TspRI	CASTG	5 cut(s)	298, 366, 438, 579, 1165
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	2 cut(s)	322, 348
XceI	RCATGY	2 cut(s)	421, 1191
XhoI	CTCGAG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	2 cut(s)	710, 1021
XspI	CTAG	3 cut(s)	260, 297, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.