Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8452885.1

Orthogroup ID

OG0031269

Physical Location & Seq

Genomic Coordinates Reverse (-)

978 .. 1609

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8452885.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggaagaaaacaacagaatatttccacttttctataatgtggaaccctctgatgtaagatctcaaagggggagttttgcagaagctttagccaagcaagagtatgaattagagaaggtgaggcagtggagagctgctttaacaaaagtgggcagtttgtccgggtggcatacactggattacaagtctgagagagatcttgtcgaagccattatgaaatctatgtggagtaaagtaaaacaacgggttgtggaaatcaacacgggtggttttgaagtatttgaagcaacaagacaagccatggacgaggttatgaatgcgctaaatgatgacaaggtcactgctgttggggtctacggcatgggaggcgttggaaagacaatcatggtggaacatgtctgtcaacaagctcagaataatggcctttttgatcatgtgattatggttgttgttacccaaagccctgacttgagaaaaattcaaggcatgttggcagatcagttgggcgtcggattgcaggaaactacactgagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

178

Amino Acids

20.06

Weight (kDa)

5.45

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031269)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8452885.1_g000001 Rmu_sc0003514.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	507
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	3 cut(s)	275, 284, 482
AluBI	AGCT	3 cut(s)	86, 134, 410
AluI	AGCT	3 cut(s)	86, 134, 410
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	373
BclI	TGATCA	1 cut(s)	430
BcnI	CCSGG	1 cut(s)	163
BglII	AGATCT	2 cut(s)	59, 196
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	490
BpuMI	CCSGG	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	180, 425, 521
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	121
BshFI	GGCC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	423
Bsp143I	GATC	4 cut(s)	59, 196, 430, 496
Bsp19I	CCATGG	1 cut(s)	300
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	3 cut(s)	181, 424, 522
BspLI	GGNNCC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	4 cut(s)	59, 196, 430, 496
BssNI	GRCGYC	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	300
BstACI	GRCGYC	1 cut(s)	507
BstDEI	CTNAG	3 cut(s)	189, 411, 530
BstDSI	CCRYGG	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	4 cut(s)	62, 199, 433, 499
BstMBI	GATC	4 cut(s)	59, 196, 430, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstNSI	RCATGY	2 cut(s)	398, 490
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	2 cut(s)	59, 196
BstYI	RGATCY	2 cut(s)	59, 196
BsuRI	GGCC	1 cut(s)	423
BtgI	CCRYGG	1 cut(s)	300
BtsI	GCAGTG	2 cut(s)	131, 339
BtsIMutI	CAGTG	4 cut(s)	131, 173, 339, 527
CfoI	GCGC	1 cut(s)	322
CseI	GACGC	1 cut(s)	496
CspCI	CAANNNNNGTGG	4 cut(s)	247, 282, 369, 404
CviAII	CATG	6 cut(s)	301, 361, 385, 395, 434, 487
CviJI	RGCY	8 cut(s)	86, 92, 134, 209, 299, 410, 423, 462
CviKI_1	RGCY	8 cut(s)	86, 92, 134, 209, 299, 410, 423, 462
DdeI	CTNAG	3 cut(s)	189, 411, 530
DpnI	GATC	4 cut(s)	61, 198, 432, 498
DpnII	GATC	4 cut(s)	59, 196, 430, 496
Eco130I	CCWWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	6 cut(s)	304, 364, 388, 398, 437, 490
FatI	CATG	6 cut(s)	300, 360, 384, 394, 433, 486
FbaI	TGATCA	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	423
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	496
HhaI	GCGC	1 cut(s)	322
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	6 cut(s)	304, 364, 388, 398, 437, 490
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	404
HindII	GTYRAC	1 cut(s)	404
HindIII	AAGCTT	1 cut(s)	84
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	355, 404
Hpy188I	TCNGA	4 cut(s)	52, 190, 414, 512
Hpy8I	GTNNAC	2 cut(s)	355, 404
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	80, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	3 cut(s)	189, 411, 530
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	6 cut(s)	304, 364, 388, 398, 437, 490
HspAI	GCGC	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	59, 196, 430, 496
LpnPI	CCDG	4 cut(s)	161, 175, 477, 503
Lsp1109I	GCAGC	1 cut(s)	121
MaeIII	GTNAC	2 cut(s)	337, 451
MalI	GATC	4 cut(s)	61, 198, 432, 498
MboI	GATC	4 cut(s)	59, 196, 430, 496
MboII	GAAGA	1 cut(s)	17
MflI	RGATCY	2 cut(s)	59, 196
MluCI	AATT	2 cut(s)	107, 477
MmeI	TCCRAC	2 cut(s)	352, 490
MnlI	CCTC	4 cut(s)	58, 114, 301, 359
MseI	TTAA	1 cut(s)	140
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	366
NciI	CCSGG	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	4 cut(s)	59, 196, 430, 496
NlaIII	CATG	6 cut(s)	304, 364, 388, 398, 437, 490
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	337
NspI	RCATGY	2 cut(s)	398, 490
PciI	ACATGT	1 cut(s)	394
PctI	GAATGC	1 cut(s)	322
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	136
PscI	ACATGT	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	45
PsuI	RGATCY	2 cut(s)	59, 196
PsyI	GACNNNGTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	4 cut(s)	59, 196, 430, 496
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	6 cut(s)	88, 120, 136, 312, 339, 412
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	2 cut(s)	107, 477
SspI	AATATT	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	300
TaqI	TCGA	1 cut(s)	204
TasI	AATT	2 cut(s)	107, 477
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	4 cut(s)	131, 180, 346, 534
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	3 cut(s)	120, 230, 329
TspRI	CASTG	4 cut(s)	131, 180, 346, 534
Tth111I	GACNNNGTC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	477
XceI	RCATGY	2 cut(s)	398, 490
XmiI	GTMKAC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.