Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003514.1

Orthogroup ID

OG0031269

Physical Location & Seq

Genomic Coordinates Forward (+)

18269 .. 19239

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003514.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggacttgagccctcgaaaaactgctgcatctcttccttcatcagctgaaccatcatcaatagctcgtcggtggacgtatgatgtgtatttgagtttcaggggtcctgacactggatggggtattacaaccgatatatacaatcagctgcaagagagaagaatcacaacagtcacggttgacccagatcctgacccagagaagaatcacaagtgggatgatatttctcgcgctctgcggagggcaattgaagaatcaaggtgtgcaattgttgttctgtcggaaaactatgctcattctacttggtgtttggaggaacttacaaagatctgtgagtgcatggaagaaaacaacagaatatttccacttttctataatgtggaaccctctgatgtaagatctcaaagggggagttttgcagaagctttagccaagcaagagtatgaattagagaaggtgaggcagtggagagctgctttaacaaaagtgggcagtttgtccgggtggcatacactggattacaagtctgagagagatcttgtcgaagccattatgaaatctatgtggagtaaagtaaaacaacgggttgtggaaatcaacacgggtggttttgaagtatttgaagcaacaagacaagccatggacgaggttatgaatgcgctaaatgatgacaaggtcactgctgttggggtctacggcatgggaggcgttggaaagacaatcatggtggaacatgtctgtcaacaagctcagaataatggcctttttgatcatgtgattatggttgttgttacccaaagccctgacttgagaaaaattcaaggcatgttggcagatcagttgggcgtcggattgcaggaaactacactgagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

291

Amino Acids

32.98

Weight (kDa)

5.31

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031269)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8452885.1_g000001 Rmu_sc0003514.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	693
AccII	CGCG	1 cut(s)	231
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	816
AcyI	GRCGYC	1 cut(s)	846
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	733
AgsI	TTSAA	4 cut(s)	251, 614, 623, 821
AluBI	AGCT	6 cut(s)	47, 65, 148, 425, 473, 749
AluI	AGCT	6 cut(s)	47, 65, 148, 425, 473, 749
AlwI	GGATC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	760
ApeKI	GCWGC	3 cut(s)	26, 148, 473
ApoI	RAATTY	1 cut(s)	816
AspLEI	GCGC	2 cut(s)	233, 661
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	13, 135, 460
BccI	CCATC	2 cut(s)	61, 111
BceAI	ACGGC	1 cut(s)	712
BclI	TGATCA	1 cut(s)	769
BcnI	CCSGG	1 cut(s)	502
BglII	AGATCT	3 cut(s)	327, 398, 535
BisI	GCNGC	3 cut(s)	27, 149, 474
BlsI	GCNGC	3 cut(s)	28, 150, 475
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	105, 384
BmrFI	CCNGG	1 cut(s)	502
BmsI	GCATC	1 cut(s)	38
BpuEI	CTTGAG	2 cut(s)	28, 829
BpuMI	CCSGG	1 cut(s)	502
BsaHI	GRCGYC	1 cut(s)	846
BsaJI	CCNNGG	1 cut(s)	639
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	118, 519
BseDI	CCNNGG	1 cut(s)	639
BseGI	GGATG	2 cut(s)	122, 223
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMII	CTCAG	3 cut(s)	519, 764, 860
BseNI	ACTGG	2 cut(s)	118, 519
BseXI	GCAGC	3 cut(s)	13, 135, 460
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	762
BsiSI	CCGG	1 cut(s)	501
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	1 cut(s)	762
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	6 cut(s)	187, 327, 398, 535, 769, 835
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	762
BspCNI	CTCAG	3 cut(s)	520, 763, 861
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	105, 384
BspPI	GGATC	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	118, 519
BssECI	CCNNGG	1 cut(s)	639
BssMI	GATC	6 cut(s)	187, 327, 398, 535, 769, 835
BssNI	GRCGYC	1 cut(s)	846
BssT1I	CCWWGG	1 cut(s)	639
Bst4CI	ACNGT	2 cut(s)	172, 178
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	846
BstDEI	CTNAG	3 cut(s)	528, 750, 869
BstDSI	CCRYGG	1 cut(s)	639
BstF5I	GGATG	2 cut(s)	122, 223
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	233, 661
BstKTI	GATC	6 cut(s)	190, 330, 401, 538, 772, 838
BstMBI	GATC	6 cut(s)	187, 327, 398, 535, 769, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	705
BstNSI	RCATGY	2 cut(s)	737, 829
BstSCI	CCNGG	1 cut(s)	500
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	13, 135, 460
BstX2I	RGATCY	4 cut(s)	187, 327, 398, 535
BstYI	RGATCY	4 cut(s)	187, 327, 398, 535
BsuRI	GGCC	1 cut(s)	762
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	122, 223
BtsI	GCAGTG	2 cut(s)	470, 678
BtsIMutI	CAGTG	5 cut(s)	111, 470, 512, 678, 866
CaiI	CAGNNNCTG	1 cut(s)	191
CfoI	GCGC	2 cut(s)	233, 661
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	835
CspCI	CAANNNNNGTGG	4 cut(s)	586, 621, 708, 743
CviAII	CATG	7 cut(s)	340, 640, 700, 724, 734, 773, 826
DdeI	CTNAG	3 cut(s)	528, 750, 869
DpnI	GATC	6 cut(s)	189, 329, 400, 537, 771, 837
DpnII	GATC	6 cut(s)	187, 327, 398, 535, 769, 835
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	639
EcoT38I	GRGCYC	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	639
FaeI	CATG	7 cut(s)	343, 643, 703, 727, 737, 776, 829
FatI	CATG	7 cut(s)	339, 639, 699, 723, 733, 772, 825
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	3 cut(s)	27, 149, 474
FokI	GGATG	2 cut(s)	129, 230
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	3 cut(s)	27, 149, 474
GlaI	GCGC	2 cut(s)	232, 660
GluI	GCNGC	3 cut(s)	27, 149, 474
HaeIII	GGCC	1 cut(s)	762
HapII	CCGG	1 cut(s)	501
HgaI	GACGC	1 cut(s)	835
HhaI	GCGC	2 cut(s)	233, 661
Hin1I	GRCGYC	1 cut(s)	846
Hin1II	CATG	7 cut(s)	343, 643, 703, 727, 737, 776, 829
Hin6I	GCGC	2 cut(s)	231, 659
HinP1I	GCGC	2 cut(s)	231, 659
HincII	GTYRAC	2 cut(s)	181, 743
HindII	GTYRAC	2 cut(s)	181, 743
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	3 cut(s)	162, 205, 254
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	4 cut(s)	75, 181, 694, 743
Hpy188I	TCNGA	5 cut(s)	283, 391, 529, 753, 851
Hpy188III	TCNNGA	2 cut(s)	107, 191
Hpy8I	GTNNAC	4 cut(s)	75, 181, 694, 743
Hpy99I	CGWCG	2 cut(s)	72, 851
HpyAV	CCTTC	2 cut(s)	48, 448
HpyCH4III	ACNGT	2 cut(s)	172, 178
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	6 cut(s)	29, 151, 266, 339, 419, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	705
HpyF3I	CTNAG	3 cut(s)	528, 750, 869
HpySE526I	ACGT	1 cut(s)	77
Hsp92I	GRCGYC	1 cut(s)	846
Hsp92II	CATG	7 cut(s)	343, 643, 703, 727, 737, 776, 829
HspAI	GCGC	2 cut(s)	231, 659
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	6 cut(s)	187, 327, 398, 535, 769, 835
Lsp1109I	GCAGC	3 cut(s)	13, 135, 460
LweI	GCATC	1 cut(s)	38
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	3 cut(s)	172, 676, 790
MalI	GATC	6 cut(s)	189, 329, 400, 537, 771, 837
MboI	GATC	6 cut(s)	187, 327, 398, 535, 769, 835
MboII	GAAGA	5 cut(s)	26, 171, 214, 263, 356
MfeI	CAATTG	2 cut(s)	246, 267
MflI	RGATCY	4 cut(s)	187, 327, 398, 535
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	4 cut(s)	246, 267, 446, 816
MmeI	TCCRAC	3 cut(s)	261, 691, 829
MnlI	CCTC	7 cut(s)	24, 234, 307, 397, 453, 640, 698
MseI	TTAA	1 cut(s)	479
MspA1I	CMGCKG	2 cut(s)	47, 148
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	1 cut(s)	502
MunI	CAATTG	2 cut(s)	246, 267
Mva1269I	GAATGC	1 cut(s)	661
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	705
NciI	CCSGG	1 cut(s)	502
NcoI	CCATGG	1 cut(s)	639
NdeII	GATC	6 cut(s)	187, 327, 398, 535, 769, 835
NlaIII	CATG	7 cut(s)	343, 643, 703, 727, 737, 776, 829
NlaIV	GGNNCC	2 cut(s)	105, 384
NmuCI	GTSAC	2 cut(s)	172, 676
NspI	RCATGY	2 cut(s)	737, 829
PciI	ACATGT	1 cut(s)	733
PctI	GAATGC	1 cut(s)	661
PfeI	GAWTC	3 cut(s)	162, 205, 254
PflFI	GACNNNGTC	1 cut(s)	674
PkrI	GCNGC	3 cut(s)	28, 150, 475
PpuMI	RGGWCCY	1 cut(s)	104
PscI	ACATGT	1 cut(s)	733
Psp5II	RGGWCCY	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	105, 384
PspPI	GGNCC	1 cut(s)	104
PspPPI	RGGWCCY	1 cut(s)	104
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	4 cut(s)	187, 327, 398, 535
PsyI	GACNNNGTC	1 cut(s)	674
PvuII	CAGCTG	2 cut(s)	47, 148
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	3 cut(s)	27, 149, 474
Sau3AI	GATC	6 cut(s)	187, 327, 398, 535, 769, 835
Sau96I	GGNCC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	1 cut(s)	38
SinI	GGWCC	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	7, 808
SmoI	CTYRAG	2 cut(s)	7, 808
Sse9I	AATT	4 cut(s)	246, 267, 446, 816
SsiI	CCGC	1 cut(s)	238
SspI	AATATT	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	500
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	2 cut(s)	172, 178
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	16, 543
TasI	AATT	4 cut(s)	246, 267, 446, 816
TfiI	GAWTC	3 cut(s)	162, 205, 254
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	5 cut(s)	118, 470, 519, 685, 873
TseFI	GTSAC	2 cut(s)	172, 676
TseI	GCWGC	3 cut(s)	26, 148, 473
Tsp45I	GTSAC	2 cut(s)	172, 676
TspDTI	ATGAA	4 cut(s)	30, 459, 569, 668
TspRI	CASTG	5 cut(s)	118, 470, 519, 685, 873
Tth111I	GACNNNGTC	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	816
XceI	RCATGY	2 cut(s)	737, 829
XmiI	GTMKAC	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.