Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8455345.1

Orthogroup ID

OG0031350

Physical Location & Seq

Genomic Coordinates Reverse (-)

901 .. 1413

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8455345.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgggatacatggctcctgagtgtgttaccacagggaaagctagtaaggaaacagatatctatagttttggagtcgttgcactggagatagcatgtggaagaatacccatcaatctcaagttggaaagaaatcaaatcaatactgttgaatgggtttggaagctgcatggagaagggaaaatcattgaagctgccgacccaaaactctgtagtgattttgatgaaaaacgagtgtttaatgattgttggtttgtggtgtgctcgcccagactgcagaggcttacaatactacaacgattcaagtgcttaactacgaagttccggtccccacactcttccatcaaagtttctggtggcaacctatttctgcaatatcattctccaattcttccgacaataatactggttcgagcagaggtcaaagtggctatagcacatattcctcgcagatcaccacatcttcttcatcaaactcctatccatcgacgtccggccttccaggaagcaccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

170

Amino Acids

19.34

Weight (kDa)

9.38

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031350)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8455345.1_g000002 Rmu_sc0005728.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	490
AcyI	GRCGYC	1 cut(s)	487
AgsI	TTSAA	3 cut(s)	149, 188, 301
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	3 cut(s)	41, 163, 191
AluI	AGCT	3 cut(s)	41, 163, 191
Alw21I	GWGCWC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	2 cut(s)	163, 191
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	150, 178
BccI	CCATC	3 cut(s)	116, 347, 489
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciT130I	CCWGG	1 cut(s)	500
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	4 cut(s)	61, 208, 272, 429
BisI	GCNGC	2 cut(s)	164, 192
BlsI	GCNGC	2 cut(s)	165, 193
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	2 cut(s)	15, 326
BmrFI	CCNGG	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	487
BsaWI	WCCGGW	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	87, 408
BseBI	CCWGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	2 cut(s)	87, 408
BseXI	GCAGC	2 cut(s)	150, 178
BshFI	GGCC	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	322, 491
BslFI	GGGAC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	449
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	15, 326
BspMAI	CTGCAG	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	87, 408
BssMI	GATC	1 cut(s)	449
BssNI	GRCGYC	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	340
BstACI	GRCGYC	1 cut(s)	487
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	452
BstMBI	GATC	1 cut(s)	449
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	4 cut(s)	61, 208, 272, 429
BstV1I	GCAGC	2 cut(s)	150, 178
BsuRI	GGCC	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	324
CviAII	CATG	3 cut(s)	10, 93, 167
CviJI	RGCY	7 cut(s)	14, 41, 163, 191, 280, 428, 494
CviKI_1	RGCY	7 cut(s)	14, 41, 163, 191, 280, 428, 494
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	451
DpnII	GATC	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco32I	GATATC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	498
EcoRV	GATATC	1 cut(s)	58
FaeI	CATG	3 cut(s)	13, 96, 170
FaiI	YATR	7 cut(s)	11, 63, 94, 168, 431, 438, 511
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	3 cut(s)	9, 92, 166
Fnu4HI	GCNGC	2 cut(s)	164, 192
Fsp4HI	GCNGC	2 cut(s)	164, 192
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	2 cut(s)	164, 192
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	2 cut(s)	322, 491
Hin1I	GRCGYC	1 cut(s)	487
Hin1II	CATG	3 cut(s)	13, 96, 170
HinfI	GANTC	2 cut(s)	72, 297
HpaII	CCGG	2 cut(s)	322, 491
HphI	GGTGA	1 cut(s)	444
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	1 cut(s)	17
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	2 cut(s)	167, 505
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	4 cut(s)	80, 166, 274, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	487
Hsp92I	GRCGYC	1 cut(s)	487
Hsp92II	CATG	3 cut(s)	13, 96, 170
Kzo9I	GATC	1 cut(s)	449
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	9 cut(s)	18, 30, 68, 280, 335, 336, 389, 485, 504
Lsp1109I	GCAGC	2 cut(s)	150, 178
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	451
MboI	GATC	1 cut(s)	449
MboII	GAAGA	5 cut(s)	111, 327, 380, 452, 455
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	2 cut(s)	102, 416
MnlI	CCTC	3 cut(s)	270, 409, 453
MseI	TTAA	2 cut(s)	237, 308
MspI	CCGG	2 cut(s)	322, 491
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	1 cut(s)	449
NlaIII	CATG	3 cut(s)	13, 96, 170
NlaIV	GGNNCC	2 cut(s)	15, 326
NspI	RCATGY	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	297
PfoI	TCCNGGA	1 cut(s)	498
PkrI	GCNGC	2 cut(s)	165, 193
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	2 cut(s)	15, 326
PspPI	GGNCC	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	237, 308
SatI	GCNGC	2 cut(s)	164, 192
Sau3AI	GATC	1 cut(s)	449
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	6 cut(s)	43, 165, 193, 363, 420, 490
SfcI	CTRYAG	4 cut(s)	61, 208, 272, 429
SinI	GGWCC	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	384
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	2 cut(s)	409, 484
TasI	AATT	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	2 cut(s)	237, 308
Tru9I	TTAA	2 cut(s)	237, 308
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	2 cut(s)	163, 191
TspDTI	ATGAA	2 cut(s)	237, 455
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	324
XceI	RCATGY	1 cut(s)	96
XspI	CTAG	1 cut(s)	42
ZraI	GACGTC	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.