Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005728.1

Orthogroup ID

OG0031350

Physical Location & Seq

Genomic Coordinates Reverse (-)

35569 .. 37032

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005728.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggcagctccaccatgtccacgagcacgacaccaccacccccaccgtttccatcaacccgtacccacaactcaccacgaatcccagcgactcaatctgagacagaaccgccacgggcagcggagctccggaggtcatgatctggtttcggctcaggtcggacaattcggcttttggataacaatcacaaacaacagtttggctggaagaatgggatacatggctcctgagtgtgttaccacagggaaagctagtaaggaaacagatatctatagttttggagtcgttgcactggagatagcatgtggaagaatacccatcaatctcaagttggaaagaaatcaaatcaatactgttgaatgggtttggaagctgcatggagaagggaaaatcattgaagctgccgacccaaaactctgtagtgattttgatgaaaaacgagtgtttaatgattgttggtttgtggtgtgctcgcccagactgcagaggcttacaatactacaacgattcaagtgcttaactacgaagttccggtccccacactcttccatcaaagtttctggtggcaacctatttctgcaatatcattctccaattcttccgacaataatactggttcgagcagaggtcaaagtggctatagcacatattcctcgcagatcaccacatcttcttcatcaaactcctatccatcgacgtccggccttccaggaagcaccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

240

Amino Acids

27.26

Weight (kDa)

9.94

Isoelectric Point (pI)

54.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031350)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8455345.1_g000002 Rmu_sc0005728.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	700
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	2 cut(s)	109, 121
AcyI	GRCGYC	1 cut(s)	697
AfaI	GTAC	1 cut(s)	63
AgsI	TTSAA	3 cut(s)	359, 398, 511
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	5 cut(s)	8, 126, 251, 373, 401
AluI	AGCT	5 cut(s)	8, 126, 251, 373, 401
Alw21I	GWGCWC	3 cut(s)	28, 128, 473
Alw26I	GTCTC	1 cut(s)	94
Aor13HI	TCCGGA	1 cut(s)	128
AoxI	GGCC	1 cut(s)	702
ApeKI	GCWGC	4 cut(s)	5, 118, 373, 401
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	2 cut(s)	65, 654
AvaII	GGWCC	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	128
BauI	CACGAG	1 cut(s)	21
Bbv12I	GWGCWC	3 cut(s)	28, 128, 473
BbvI	GCAGC	4 cut(s)	17, 130, 360, 388
BccI	CCATC	4 cut(s)	60, 326, 557, 699
BcgI	CGANNNNNNTGC	2 cut(s)	495, 529
BciT130I	CCWGG	1 cut(s)	710
BciVI	GTATCC	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	4 cut(s)	271, 418, 482, 639
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	4 cut(s)	6, 119, 374, 402
BlsI	GCNGC	4 cut(s)	7, 120, 375, 403
Bme1390I	CCNGG	1 cut(s)	710
Bme18I	GGWCC	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	2 cut(s)	225, 536
BmrFI	CCNGG	1 cut(s)	710
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	697
BsaJI	CCNNGG	1 cut(s)	112
BsaWI	WCCGGW	2 cut(s)	128, 531
Bse1I	ACTGG	2 cut(s)	297, 618
Bse8I	GATNNNNATC	1 cut(s)	182
BseAI	TCCGGA	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	182
BseMII	CTCAG	3 cut(s)	89, 167, 219
BseNI	ACTGG	2 cut(s)	297, 618
BseXI	GCAGC	4 cut(s)	17, 130, 360, 388
BseYI	CCCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	704
BsiHKAI	GWGCWC	3 cut(s)	28, 128, 473
BsiSI	CCGG	3 cut(s)	129, 532, 701
BslFI	GGGAC	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	704
Bsp1286I	GDGCHC	3 cut(s)	28, 128, 473
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	139, 659
BspACI	CCGC	2 cut(s)	109, 121
BspANI	GGCC	1 cut(s)	704
BspCNI	CTCAG	3 cut(s)	90, 166, 220
BspEI	TCCGGA	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	225, 536
BspMAI	CTGCAG	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	297, 618
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	2 cut(s)	139, 659
BssNI	GRCGYC	1 cut(s)	697
BssSI	CACGAG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	3 cut(s)	47, 197, 355
Bst6I	CTCTTC	1 cut(s)	550
BstACI	GRCGYC	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	473
BstDEI	CTNAG	3 cut(s)	98, 153, 228
BstDSI	CCRYGG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	142, 662
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	2 cut(s)	139, 659
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	4 cut(s)	271, 418, 482, 639
BstV1I	GCAGC	4 cut(s)	17, 130, 360, 388
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	704
BtgI	CCRYGG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	473
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	5 cut(s)	15, 137, 220, 303, 377
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	3 cut(s)	98, 153, 228
DpnI	GATC	2 cut(s)	141, 661
DpnII	GATC	2 cut(s)	139, 659
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
Ecl136II	GAGCTC	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	128
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	534
Eco53kI	GAGCTC	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	708
EcoRV	GATATC	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	128
FaeI	CATG	5 cut(s)	18, 140, 223, 306, 380
FaiI	YATR	9 cut(s)	16, 138, 221, 273, 304, 378, 641, 648, 721
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	5 cut(s)	14, 136, 219, 302, 376
Fnu4HI	GCNGC	4 cut(s)	6, 119, 374, 402
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	4 cut(s)	6, 119, 374, 402
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	4 cut(s)	6, 119, 374, 402
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	704
HapII	CCGG	3 cut(s)	129, 532, 701
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	5 cut(s)	18, 140, 223, 306, 380
HinfI	GANTC	4 cut(s)	80, 90, 282, 507
HpaII	CCGG	3 cut(s)	129, 532, 701
HphI	GGTGA	2 cut(s)	65, 654
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	3 cut(s)	99, 161, 603
Hpy188III	TCNNGA	3 cut(s)	129, 137, 227
Hpy8I	GTNNAC	1 cut(s)	20
Hpy99I	CGWCG	1 cut(s)	699
HpyAV	CCTTC	2 cut(s)	377, 715
HpyCH4III	ACNGT	3 cut(s)	47, 197, 355
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	4 cut(s)	290, 376, 484, 580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	3 cut(s)	98, 153, 228
HpySE526I	ACGT	1 cut(s)	697
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	5 cut(s)	18, 140, 223, 306, 380
Kpn2I	TCCGGA	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	139, 659
LmnI	GCTCC	4 cut(s)	13, 123, 131, 229
Lsp1109I	GCAGC	4 cut(s)	17, 130, 360, 388
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	697
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	2 cut(s)	141, 661
MboI	GATC	2 cut(s)	139, 659
MboII	GAAGA	6 cut(s)	219, 321, 537, 590, 662, 665
MhlI	GDGCHC	3 cut(s)	28, 128, 473
MluCI	AATT	2 cut(s)	164, 594
MlyI	GAGTC	2 cut(s)	84, 291
MmeI	TCCRAC	3 cut(s)	139, 312, 626
MnlI	CCTC	4 cut(s)	125, 480, 619, 663
MroI	TCCGGA	1 cut(s)	128
MseI	TTAA	2 cut(s)	447, 518
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	3 cut(s)	129, 532, 701
MspR9I	CCNGG	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	1 cut(s)	481
NdeII	GATC	2 cut(s)	139, 659
NlaIII	CATG	5 cut(s)	18, 140, 223, 306, 380
NlaIV	GGNNCC	2 cut(s)	225, 536
NspI	RCATGY	1 cut(s)	306
PagI	TCATGA	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	80, 507
PfoI	TCCNGGA	1 cut(s)	708
PkrI	GCNGC	4 cut(s)	7, 120, 375, 403
PleI	GAGTC	2 cut(s)	84, 290
PpsI	GAGTC	2 cut(s)	84, 290
Psp124BI	GAGCTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	708
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	225, 536
PspPI	GGNCC	1 cut(s)	534
PstI	CTGCAG	1 cut(s)	486
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	447, 518
SatI	GCNGC	4 cut(s)	6, 119, 374, 402
Sau3AI	GATC	2 cut(s)	139, 659
Sau96I	GGNCC	1 cut(s)	534
SchI	GAGTC	2 cut(s)	84, 291
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	3 cut(s)	28, 128, 473
SfcI	CTRYAG	4 cut(s)	271, 418, 482, 639
SinI	GGWCC	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	2 cut(s)	164, 594
SsiI	CCGC	2 cut(s)	109, 121
SspMI	CTAG	1 cut(s)	252
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	708
TaaI	ACNGT	3 cut(s)	47, 197, 355
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	2 cut(s)	619, 694
TasI	AATT	2 cut(s)	164, 594
TfiI	GAWTC	2 cut(s)	80, 507
Tru1I	TTAA	2 cut(s)	447, 518
Tru9I	TTAA	2 cut(s)	447, 518
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	4 cut(s)	5, 118, 373, 401
TspDTI	ATGAA	2 cut(s)	447, 665
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	534
XceI	RCATGY	1 cut(s)	306
XspI	CTAG	1 cut(s)	252
ZraI	GACGTC	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.