Rmu_co8470813.1_g000001

Belongs to the glycosyl hydrolase 2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8470813.1
OG0031162
Physical Location & Seq
Forward (+)
1 .. 1831
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8470813.1_g000001.1.cds

Sequence Viewer

Length: 794 bp
ataatgacaaaggcggaggtgccagtagttattcgtccaagtggcaagctgctcatattgataaccttcattatattaccaagagctgttctgtacagaatatgactgaccatcttgtgaaagtagctgttgtttttctcggtgttccaaacagtggggacggttctggggtggaagacacaaatgccttaattgaaattgatgtgatttacacaatctacggttcaggggatgttgttgttgaatgcaatgttagaccaagttcgaaccttcctcctctgccacgtgtgggagttgagttccacctggagaagtcaatagaccagattaaatggtacggaagaggaccatttgaatgttatccagacagaaaagcagctgctcatgttggagtctatgagcagaaagtgagtgatctgcatgtcccttatatagttcctggggaatgttcaggtagggcagacgttaggtgggtgacatttcaaaacaaggacggtttgggaatctatgcttcaatatatggcagctctccacccatgcaaataaatgcaagttattacaccacagctgagctggatcgggcaacacacaatgaagatcttatcagaggagatgacattgaggttcatcttgatcacaagcacatgggcctggctggggatgatagttggtctccatgtgtccatgacaagtatctgattcctcctgttccaagctcattctcaattaggctctctccaataactgctgcaacctctggccatgatatctacaaatctcaacttcaactatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00511 ko00600 ko01100 map00052 map00511 map00600 map01100
Pfam Domains
Protein Families
Bgal_small_N DUF4981 Glyco_hydro_2 Glyco_hydro_2_C Glyco_hydro_2_N

Protein Analysis

263

Amino Acids

28.85

Weight (kDa)

5.46

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031162)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8470813.1_g000001 Rmu_sc0001850.1_g000040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccB7I CCANNNNNTGG 1 cut(s) 154
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 584
AcoI YGGCCR 1 cut(s) 759
AcvI CACGTG 1 cut(s) 286
AfaI GTAC 2 cut(s) 95, 337
AfiI CCNNNNNNNGG 3 cut(s) 154, 289, 657
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 6 cut(s) 196, 244, 355, 484, 515, 787
AjnI CCWGG 3 cut(s) 305, 438, 650
AluBI AGCT 8 cut(s) 49, 86, 127, 379, 527, 568, 573, 716
AluI AGCT 8 cut(s) 49, 86, 127, 379, 527, 568, 573, 716
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 1 cut(s) 584
AoxI GGCC 2 cut(s) 648, 759
ApeKI GCWGC 5 cut(s) 49, 376, 379, 524, 748
AspS9I GGNCC 2 cut(s) 346, 648
AsuHPI GGTGA 1 cut(s) 486
AsuII TTCGAA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 346
BalI TGGCCA 1 cut(s) 761
BanI GGYRCC 1 cut(s) 19
BbrPI CACGTG 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 182
BbvI GCAGC 5 cut(s) 36, 366, 388, 536, 735
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 3 cut(s) 307, 440, 652
BclI TGATCA 1 cut(s) 633
BcoDI GTCTC 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 790
BglII AGATCT 1 cut(s) 597
BisI GCNGC 5 cut(s) 50, 377, 380, 525, 749
BlpI GCTNAGC 1 cut(s) 569
BlsI GCNGC 5 cut(s) 51, 378, 381, 526, 750
Bme1390I CCNGG 3 cut(s) 307, 440, 652
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 346, 648
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 3 cut(s) 307, 440, 652
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 328
Bpu1102I GCTNAGC 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 1 cut(s) 439
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 289, 657
Bse1I ACTGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 3 cut(s) 307, 440, 652
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 2 cut(s) 237, 666
BseLI CCNNNNNNNGG 3 cut(s) 154, 289, 657
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 560
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 2 cut(s) 266, 623
BseXI GCAGC 5 cut(s) 36, 366, 388, 536, 735
BseYI CCCAGC 1 cut(s) 655
BshFI GGCC 2 cut(s) 650, 761
BshNI GGYRCC 1 cut(s) 19
BslFI GGGAC 2 cut(s) 172, 409
BslI CCNNNNNNNGG 3 cut(s) 154, 289, 657
BsmAI GTCTC 1 cut(s) 677
BsmFI GGGAC 2 cut(s) 172, 409
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 2 cut(s) 650, 761
Bso31I GGTCTC 1 cut(s) 677
Bsp119I TTCGAA 1 cut(s) 265
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 4 cut(s) 414, 576, 597, 633
Bsp1720I GCTNAGC 1 cut(s) 569
BspACI CCGC 1 cut(s) 14
BspANI GGCC 2 cut(s) 650, 761
BspCNI CTCAG 1 cut(s) 561
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 1 cut(s) 584
BspT104I TTCGAA 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 255
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 4 cut(s) 414, 576, 597, 633
Bst2UI CCWGG 3 cut(s) 307, 440, 652
Bst4CI ACNGT 4 cut(s) 154, 163, 223, 496
Bst6I CTCTTC 1 cut(s) 336
BstAUI TGTACA 1 cut(s) 93
BstBAI YACGTR 1 cut(s) 286
BstBI TTCGAA 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 569
BstF5I GGATG 2 cut(s) 237, 666
BstKTI GATC 4 cut(s) 417, 579, 600, 636
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 4 cut(s) 414, 576, 597, 633
BstNI CCWGG 3 cut(s) 307, 440, 652
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 3 cut(s) 305, 438, 650
BstSFI CTRYAG 1 cut(s) 790
BstV1I GCAGC 5 cut(s) 36, 366, 388, 536, 735
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 597
BstYI RGATCY 1 cut(s) 597
BsuRI GGCC 2 cut(s) 650, 761
BtsCI GGATG 2 cut(s) 237, 666
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 346, 648
Csp6I GTAC 2 cut(s) 94, 336
CviAII CATG 7 cut(s) 385, 421, 537, 645, 677, 685, 763
CviQI GTAC 2 cut(s) 94, 336
DdeI CTNAG 1 cut(s) 569
DpnI GATC 4 cut(s) 416, 578, 599, 635
DpnII GATC 4 cut(s) 414, 576, 597, 633
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
EciI GGCGGA 1 cut(s) 29
Eco31I GGTCTC 1 cut(s) 677
Eco32I GATATC 1 cut(s) 768
Eco47I GGWCC 1 cut(s) 346
Eco72I CACGTG 1 cut(s) 286
EcoRII CCWGG 3 cut(s) 305, 438, 650
EcoRV GATATC 1 cut(s) 768
FaeI CATG 7 cut(s) 388, 424, 540, 648, 680, 688, 766
FaqI GGGAC 2 cut(s) 172, 409
FatI CATG 7 cut(s) 384, 420, 536, 644, 676, 684, 762
FbaI TGATCA 1 cut(s) 633
Fnu4HI GCNGC 5 cut(s) 50, 377, 380, 525, 749
FokI GGATG 2 cut(s) 244, 673
Fsp4HI GCNGC 5 cut(s) 50, 377, 380, 525, 749
GluI GCNGC 5 cut(s) 50, 377, 380, 525, 749
GsaI CCCAGC 1 cut(s) 659
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 2 cut(s) 650, 761
Hin1II CATG 7 cut(s) 388, 424, 540, 648, 680, 688, 766
HinfI GANTC 3 cut(s) 392, 503, 699
HphI GGTGA 1 cut(s) 486
Hpy188I TCNGA 2 cut(s) 607, 698
Hpy188III TCNNGA 2 cut(s) 364, 631
HpyAV CCTTC 2 cut(s) 76, 280
HpyCH4III ACNGT 4 cut(s) 154, 163, 223, 496
HpyCH4IV ACGT 2 cut(s) 285, 464
HpyCH4V TGCA 5 cut(s) 248, 420, 540, 550, 751
HpyF3I CTNAG 1 cut(s) 569
HpySE526I ACGT 2 cut(s) 285, 464
Hsp92II CATG 7 cut(s) 388, 424, 540, 648, 680, 688, 766
Ksp22I TGATCA 1 cut(s) 633
Kzo9I GATC 4 cut(s) 414, 576, 597, 633
Lsp1109I GCAGC 5 cut(s) 36, 366, 388, 536, 735
MaeII ACGT 2 cut(s) 285, 464
MaeIII GTNAC 1 cut(s) 474
MalI GATC 4 cut(s) 416, 578, 599, 635
MboI GATC 4 cut(s) 414, 576, 597, 633
MboII GAAGA 3 cut(s) 187, 353, 607
MflI RGATCY 1 cut(s) 597
MlsI TGGCCA 1 cut(s) 761
MluCI AATT 3 cut(s) 191, 197, 725
MluNI TGGCCA 1 cut(s) 761
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 8 cut(s) 10, 284, 287, 337, 601, 615, 713, 765
Mox20I TGGCCA 1 cut(s) 761
MscI TGGCCA 1 cut(s) 761
MseI TTAA 2 cut(s) 190, 329
MslI CAYNNNNRTG 1 cut(s) 354
Msp20I TGGCCA 1 cut(s) 761
MspA1I CMGCKG 2 cut(s) 379, 568
MspR9I CCNGG 3 cut(s) 307, 440, 652
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 3 cut(s) 307, 440, 652
NdeII GATC 4 cut(s) 414, 576, 597, 633
NlaIII CATG 7 cut(s) 388, 424, 540, 648, 680, 688, 766
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 474
NspI RCATGY 1 cut(s) 424
NspV TTCGAA 1 cut(s) 265
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 2 cut(s) 503, 699
PflMI CCANNNNNTGG 1 cut(s) 154
PkrI GCNGC 5 cut(s) 51, 378, 381, 526, 750
PleI GAGTC 1 cut(s) 400
PmaCI CACGTG 1 cut(s) 286
PmlI CACGTG 1 cut(s) 286
PpsI GAGTC 1 cut(s) 400
Ppu21I YACGTR 1 cut(s) 286
Psp6I CCWGG 3 cut(s) 305, 438, 650
PspCI CACGTG 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 655
PspGI CCWGG 3 cut(s) 305, 438, 650
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 2 cut(s) 346, 648
PsuI RGATCY 1 cut(s) 597
PvuII CAGCTG 2 cut(s) 379, 568
RsaI GTAC 2 cut(s) 95, 337
RsaNI GTAC 2 cut(s) 94, 336
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 2 cut(s) 190, 329
SatI GCNGC 5 cut(s) 50, 377, 380, 525, 749
Sau3AI GATC 4 cut(s) 414, 576, 597, 633
Sau96I GGNCC 2 cut(s) 346, 648
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 3 cut(s) 307, 440, 652
SfcI CTRYAG 1 cut(s) 790
SfuI TTCGAA 1 cut(s) 265
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 354
Sse9I AATT 3 cut(s) 191, 197, 725
SsiI CCGC 1 cut(s) 14
StyD4I CCNGG 3 cut(s) 305, 438, 650
TaaI ACNGT 4 cut(s) 154, 163, 223, 496
TaiI ACGT 2 cut(s) 288, 467
TaqI TCGA 1 cut(s) 265
TasI AATT 3 cut(s) 191, 197, 725
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 2 cut(s) 503, 699
Tru1I TTAA 2 cut(s) 190, 329
Tru9I TTAA 2 cut(s) 190, 329
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 474
TseI GCWGC 5 cut(s) 49, 376, 379, 524, 748
Tsp45I GTSAC 1 cut(s) 474
TspDTI ATGAA 3 cut(s) 58, 608, 616
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 1 cut(s) 159
Van91I CCANNNNNTGG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 346
XceI RCATGY 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.