Rmu_sc0001850.1_g000040

Belongs to the glycosyl hydrolase 2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001850.1
OG0031162
Physical Location & Seq
Forward (+)
163583 .. 164539
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001850.1_g000040.1.cds

Sequence Viewer

Length: 837 bp
atgacaaaaggcatatttccatgtttttggcgagcacccacagataatgacaaaggcggaggtgccagtagttattcgtccaagtggcaagctgctcatattgataaccttcattatattaccaagagctgttctgtacagaatatgactgaccatcttgtgaaagtagctgttgtttttctcggtgttccaaacagtggggacggttctggggtggaagacacaaatgccttaattgaaattgatgtgatttacacaatctacggttcaggggatgttgttgttgaatgcaatgttagaccaagttcgaaccttcctcctctgccacgtgtgggagttgagttccacctggagaagtcaatagaccagattaaatggtacggaagaggaccatttgaatgttatccagacagaaaagcagctgctcatgttggagtctatgagcagaaagtgagtgatctgcatgtcccttatatagttcctggggaatgttcaggtagggcagacgttaggtgggtgacatttcaaaacaaggacggtttgggaatctatgcttcaatatatggcagctctccacccatgcaaataaatgcaagttattacaccacagctgagctggatcgggcaacacacaatgaagatcttatcagaggagatgacattgaggttcatcttgatcacaagcacatgggcctggctggggatgatagttggtctccatgtgtccatgacaagtatctgattcctcctgttccaagctcattctcaattaggctctctccaataactgctgcaacctctggccatgatatctacaaatctcaacttcaactatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00511 ko00600 ko01100 map00052 map00511 map00600 map01100
Pfam Domains
Protein Families
Bgal_small_N DUF4981 Glyco_hydro_2 Glyco_hydro_2_C Glyco_hydro_2_N

Protein Analysis

278

Amino Acids

30.6

Weight (kDa)

5.57

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031162)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8470813.1_g000001 Rmu_sc0001850.1_g000040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AccB7I CCANNNNNTGG 1 cut(s) 197
AciI CCGC 1 cut(s) 57
AclWI GGATC 1 cut(s) 627
AcoI YGGCCR 1 cut(s) 802
AcvI CACGTG 1 cut(s) 329
AfaI GTAC 2 cut(s) 138, 380
AfiI CCNNNNNNNGG 3 cut(s) 197, 332, 700
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 6 cut(s) 239, 287, 398, 527, 558, 830
AjnI CCWGG 3 cut(s) 348, 481, 693
AluBI AGCT 8 cut(s) 92, 129, 170, 422, 570, 611, 616, 759
AluI AGCT 8 cut(s) 92, 129, 170, 422, 570, 611, 616, 759
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 720
AlwI GGATC 1 cut(s) 627
AoxI GGCC 2 cut(s) 691, 802
ApeKI GCWGC 5 cut(s) 92, 419, 422, 567, 791
AspS9I GGNCC 2 cut(s) 389, 691
AsuHPI GGTGA 1 cut(s) 529
AsuII TTCGAA 1 cut(s) 308
AvaII GGWCC 1 cut(s) 389
BalI TGGCCA 1 cut(s) 804
BanI GGYRCC 1 cut(s) 62
BbrPI CACGTG 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 5 cut(s) 79, 409, 431, 579, 778
BccI CCATC 1 cut(s) 162
BciT130I CCWGG 3 cut(s) 350, 483, 695
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 1 cut(s) 720
BfmI CTRYAG 1 cut(s) 833
BglII AGATCT 1 cut(s) 640
BisI GCNGC 5 cut(s) 93, 420, 423, 568, 792
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 5 cut(s) 94, 421, 424, 569, 793
Bme1390I CCNGG 3 cut(s) 350, 483, 695
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 2 cut(s) 389, 691
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 3 cut(s) 350, 483, 695
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 371
Bpu1102I GCTNAGC 1 cut(s) 612
Bpu14I TTCGAA 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 720
BsaJI CCNNGG 1 cut(s) 482
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 332, 700
Bse1I ACTGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 3 cut(s) 350, 483, 695
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 2 cut(s) 280, 709
BseLI CCNNNNNNNGG 3 cut(s) 197, 332, 700
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 603
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 2 cut(s) 309, 666
BseXI GCAGC 5 cut(s) 79, 409, 431, 579, 778
BseYI CCCAGC 1 cut(s) 698
BshFI GGCC 2 cut(s) 693, 804
BshNI GGYRCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 37
BslFI GGGAC 2 cut(s) 215, 452
BslI CCNNNNNNNGG 3 cut(s) 197, 332, 700
BsmAI GTCTC 1 cut(s) 720
BsmFI GGGAC 2 cut(s) 215, 452
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 2 cut(s) 693, 804
Bso31I GGTCTC 1 cut(s) 720
Bsp119I TTCGAA 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 4 cut(s) 457, 619, 640, 676
Bsp1720I GCTNAGC 1 cut(s) 612
BspACI CCGC 1 cut(s) 57
BspANI GGCC 2 cut(s) 693, 804
BspCNI CTCAG 1 cut(s) 604
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 627
BspT104I TTCGAA 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 720
BsrDI GCAATG 1 cut(s) 298
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 4 cut(s) 457, 619, 640, 676
Bst2UI CCWGG 3 cut(s) 350, 483, 695
Bst4CI ACNGT 4 cut(s) 197, 206, 266, 539
Bst6I CTCTTC 1 cut(s) 379
BstAUI TGTACA 1 cut(s) 136
BstBAI YACGTR 1 cut(s) 329
BstBI TTCGAA 1 cut(s) 308
BstC8I GCNNGC 2 cut(s) 33, 90
BstDEI CTNAG 1 cut(s) 612
BstF5I GGATG 2 cut(s) 280, 709
BstKTI GATC 4 cut(s) 460, 622, 643, 679
BstMAI GTCTC 1 cut(s) 720
BstMBI GATC 4 cut(s) 457, 619, 640, 676
BstNI CCWGG 3 cut(s) 350, 483, 695
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 3 cut(s) 348, 481, 693
BstSFI CTRYAG 1 cut(s) 833
BstV1I GCAGC 5 cut(s) 79, 409, 431, 579, 778
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 640
BstXI CCANNNNNNTGG 1 cut(s) 27
BstYI RGATCY 1 cut(s) 640
BsuRI GGCC 2 cut(s) 693, 804
BtsCI GGATG 2 cut(s) 280, 709
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 33, 90
Cfr13I GGNCC 2 cut(s) 389, 691
Csp6I GTAC 2 cut(s) 137, 379
CviAII CATG 8 cut(s) 21, 428, 464, 580, 688, 720, 728, 806
CviQI GTAC 2 cut(s) 137, 379
DdeI CTNAG 1 cut(s) 612
DpnI GATC 4 cut(s) 459, 621, 642, 678
DpnII GATC 4 cut(s) 457, 619, 640, 676
EaeI YGGCCR 1 cut(s) 802
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
EciI GGCGGA 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 720
Eco32I GATATC 1 cut(s) 811
Eco47I GGWCC 1 cut(s) 389
Eco72I CACGTG 1 cut(s) 329
EcoRII CCWGG 3 cut(s) 348, 481, 693
EcoRV GATATC 1 cut(s) 811
FaeI CATG 8 cut(s) 24, 431, 467, 583, 691, 723, 731, 809
FaqI GGGAC 2 cut(s) 215, 452
FatI CATG 8 cut(s) 20, 427, 463, 579, 687, 719, 727, 805
FbaI TGATCA 1 cut(s) 676
Fnu4HI GCNGC 5 cut(s) 93, 420, 423, 568, 792
FokI GGATG 2 cut(s) 287, 716
Fsp4HI GCNGC 5 cut(s) 93, 420, 423, 568, 792
GluI GCNGC 5 cut(s) 93, 420, 423, 568, 792
GsaI CCCAGC 1 cut(s) 702
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 2 cut(s) 693, 804
Hin1II CATG 8 cut(s) 24, 431, 467, 583, 691, 723, 731, 809
HinfI GANTC 3 cut(s) 435, 546, 742
HphI GGTGA 1 cut(s) 529
Hpy188I TCNGA 2 cut(s) 650, 741
Hpy188III TCNNGA 2 cut(s) 407, 674
HpyAV CCTTC 2 cut(s) 119, 323
HpyCH4III ACNGT 4 cut(s) 197, 206, 266, 539
HpyCH4IV ACGT 2 cut(s) 328, 507
HpyCH4V TGCA 5 cut(s) 291, 463, 583, 593, 794
HpyF3I CTNAG 1 cut(s) 612
HpySE526I ACGT 2 cut(s) 328, 507
Hsp92II CATG 8 cut(s) 24, 431, 467, 583, 691, 723, 731, 809
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 4 cut(s) 457, 619, 640, 676
Lsp1109I GCAGC 5 cut(s) 79, 409, 431, 579, 778
MaeII ACGT 2 cut(s) 328, 507
MaeIII GTNAC 1 cut(s) 517
MalI GATC 4 cut(s) 459, 621, 642, 678
MboI GATC 4 cut(s) 457, 619, 640, 676
MboII GAAGA 3 cut(s) 230, 396, 650
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 804
MluCI AATT 3 cut(s) 234, 240, 768
MluNI TGGCCA 1 cut(s) 804
MlyI GAGTC 1 cut(s) 444
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 8 cut(s) 53, 327, 330, 380, 644, 658, 756, 808
Mox20I TGGCCA 1 cut(s) 804
MscI TGGCCA 1 cut(s) 804
MseI TTAA 2 cut(s) 233, 372
MslI CAYNNNNRTG 1 cut(s) 397
Msp20I TGGCCA 1 cut(s) 804
MspA1I CMGCKG 2 cut(s) 422, 611
MspR9I CCNGG 3 cut(s) 350, 483, 695
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 3 cut(s) 350, 483, 695
NdeII GATC 4 cut(s) 457, 619, 640, 676
NlaIII CATG 8 cut(s) 24, 431, 467, 583, 691, 723, 731, 809
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 517
NspI RCATGY 1 cut(s) 467
NspV TTCGAA 1 cut(s) 308
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 2 cut(s) 546, 742
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 5 cut(s) 94, 421, 424, 569, 793
PleI GAGTC 1 cut(s) 443
PmaCI CACGTG 1 cut(s) 329
PmlI CACGTG 1 cut(s) 329
PpsI GAGTC 1 cut(s) 443
Ppu21I YACGTR 1 cut(s) 329
Psp6I CCWGG 3 cut(s) 348, 481, 693
PspCI CACGTG 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 698
PspGI CCWGG 3 cut(s) 348, 481, 693
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 389, 691
PsuI RGATCY 1 cut(s) 640
PvuII CAGCTG 2 cut(s) 422, 611
RsaI GTAC 2 cut(s) 138, 380
RsaNI GTAC 2 cut(s) 137, 379
RseI CAYNNNNRTG 1 cut(s) 397
SaqAI TTAA 2 cut(s) 233, 372
SatI GCNGC 5 cut(s) 93, 420, 423, 568, 792
Sau3AI GATC 4 cut(s) 457, 619, 640, 676
Sau96I GGNCC 2 cut(s) 389, 691
SchI GAGTC 1 cut(s) 444
ScrFI CCNGG 3 cut(s) 350, 483, 695
SduI GDGCHC 1 cut(s) 37
SfcI CTRYAG 1 cut(s) 833
SfuI TTCGAA 1 cut(s) 308
SinI GGWCC 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 397
Sse9I AATT 3 cut(s) 234, 240, 768
SsiI CCGC 1 cut(s) 57
StyD4I CCNGG 3 cut(s) 348, 481, 693
TaaI ACNGT 4 cut(s) 197, 206, 266, 539
TaiI ACGT 2 cut(s) 331, 510
TaqI TCGA 1 cut(s) 308
TasI AATT 3 cut(s) 234, 240, 768
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 2 cut(s) 546, 742
Tru1I TTAA 2 cut(s) 233, 372
Tru9I TTAA 2 cut(s) 233, 372
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 5 cut(s) 92, 419, 422, 567, 791
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 101, 651, 659
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 1 cut(s) 202
Van91I CCANNNNNTGG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 389
XceI RCATGY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.