Rmu_co8511171.1_g000001

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8511171.1
OG0031316
Physical Location & Seq
Forward (+)
2914 .. 3689
776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8511171.1_g000001.1.cds

Sequence Viewer

Length: 570 bp
atgatatcagcatgtctgaccatccttcttgcttcatcttttctggtagtgaatgcgatcgctgtgattggggagatccttgtgtttcaatcagaccggactgattggttttgctctcttgttggtggcggcagaatttatcggacatggcctttgagggagcacctgtttgaggacctgcgatgggatgctcaacgtgtccgagaggttgcggtctttgaagatggggttctgtattttggttttgacgatgatattaaaaggattacaaatgaattcaaggaaaagctgggtgaaggagcctatggaactgtttttaaaggaagtctctcttctgaattctttgttgctgtcaaagtcctaaataattctaagggaaatggggaagagtttgtcaatgaagtgggagcaatgggtcatatccaccatgtcaacgtggttcgaatggttggcatttgtgctgatggatacagaagagctcttgtttatgagtacttccccaatggttcattacaagatttcatttcctcagcagacaataagaatggtttatgtttggacccaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

189

Amino Acids

21.17

Weight (kDa)

5.23

Isoelectric Point (pI)

28.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031316)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8511171.1_g000001 Rmu_sc0004736.1_g000014

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 186
AciI CCGC 2 cut(s) 129, 212
AclWI GGATC 1 cut(s) 70
AcsI RAATTY 3 cut(s) 135, 275, 338
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 2 cut(s) 172, 184
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 3 cut(s) 89, 221, 280
AluBI AGCT 2 cut(s) 289, 479
AluI AGCT 2 cut(s) 289, 479
Alw21I GWGCWC 2 cut(s) 165, 481
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 1 cut(s) 70
AoxI GGCC 1 cut(s) 149
ApoI RAATTY 3 cut(s) 135, 275, 338
ArsI GACNNNNNNTTYG 2 cut(s) 136, 168
AsiSI GCGATCGC 1 cut(s) 60
AspS9I GGNCC 2 cut(s) 175, 559
AsuHPI GGTGA 1 cut(s) 305
AsuII TTCGAA 1 cut(s) 442
AvaII GGWCC 2 cut(s) 175, 559
BanII GRGCYC 1 cut(s) 481
Bbv12I GWGCWC 2 cut(s) 165, 481
BbvCI CCTCAGC 1 cut(s) 529
BccI CCATC 4 cut(s) 29, 177, 218, 458
BciVI GTATCC 1 cut(s) 461
BcoDI GTCTC 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 186
BfuI GTATCC 1 cut(s) 461
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BmcAI AGTACT 1 cut(s) 494
Bme18I GGWCC 2 cut(s) 175, 559
BmgT120I GGNCC 2 cut(s) 175, 559
BmiI GGNNCC 2 cut(s) 301, 561
BmsI GCATC 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 529
Bpu14I TTCGAA 1 cut(s) 442
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 184
Bse3DI GCAATG 1 cut(s) 417
BseGI GGATG 2 cut(s) 21, 193
BseLI CCNNNNNNNGG 2 cut(s) 172, 184
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 1 cut(s) 543
BseYI CCCAGC 1 cut(s) 289
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 165, 481
BsiSI CCGG 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 172, 184
BsmAI GTCTC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 1 cut(s) 151
Bsp119I TTCGAA 1 cut(s) 442
Bsp1286I GDGCHC 2 cut(s) 165, 481
Bsp143I GATC 2 cut(s) 57, 75
BspACI CCGC 2 cut(s) 129, 212
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 542
BspLI GGNNCC 2 cut(s) 301, 561
BspMI ACCTGC 1 cut(s) 186
BspPI GGATC 1 cut(s) 70
BspQI GCTCTTC 1 cut(s) 469
BspT104I TTCGAA 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 417
BssMI GATC 2 cut(s) 57, 75
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 3 cut(s) 337, 381, 469
BstBI TTCGAA 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 372, 529
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 21, 193
BstKTI GATC 2 cut(s) 60, 78
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 2 cut(s) 57, 75
BstMCI CGRYCG 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 1 cut(s) 151
BtgZI GCGATG 1 cut(s) 196
BtsCI GGATG 2 cut(s) 21, 193
BveI ACCTGC 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 175, 559
Csp6I GTAC 1 cut(s) 493
CviAII CATG 3 cut(s) 12, 147, 428
CviJI RGCY 4 cut(s) 151, 289, 302, 479
CviKI_1 RGCY 4 cut(s) 151, 289, 302, 479
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 2 cut(s) 372, 529
DpnI GATC 2 cut(s) 59, 77
DpnII GATC 2 cut(s) 57, 75
DraI TTTAAA 1 cut(s) 319
Eam1104I CTCTTC 3 cut(s) 337, 381, 469
EarI CTCTTC 3 cut(s) 337, 381, 469
Ecl136II GAGCTC 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 481
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 2 cut(s) 175, 559
Eco53kI GAGCTC 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 479
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 175
EcoRI GAATTC 2 cut(s) 275, 338
EcoRV GATATC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 481
FaeI CATG 3 cut(s) 15, 150, 431
FaiI YATR 7 cut(s) 13, 148, 306, 420, 429, 489, 553
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FatI CATG 3 cut(s) 11, 146, 427
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 2 cut(s) 8, 200
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 130
GsaI CCCAGC 1 cut(s) 293
HaeIII GGCC 1 cut(s) 151
HapII CCGG 1 cut(s) 97
Hin1II CATG 3 cut(s) 15, 150, 431
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HpaII CCGG 1 cut(s) 97
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 5 cut(s) 18, 94, 144, 203, 337
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 2 cut(s) 35, 290
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 2 cut(s) 196, 435
HpyF3I CTNAG 2 cut(s) 372, 529
HpySE526I ACGT 2 cut(s) 196, 435
Hsp92II CATG 3 cut(s) 15, 150, 431
Kzo9I GATC 2 cut(s) 57, 75
LguI GCTCTTC 1 cut(s) 469
LmnI GCTCC 3 cut(s) 160, 299, 407
LpnPI CCDG 5 cut(s) 29, 110, 179, 191, 275
LweI GCATC 1 cut(s) 178
MaeII ACGT 2 cut(s) 196, 435
MalI GATC 2 cut(s) 59, 77
MboI GATC 2 cut(s) 57, 75
MboII GAAGA 4 cut(s) 233, 324, 398, 486
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 2 cut(s) 165, 481
MluCI AATT 4 cut(s) 135, 275, 338, 367
MnlI CCTC 4 cut(s) 150, 166, 199, 538
MseI TTAA 2 cut(s) 258, 318
MspI CCGG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 58
NdeII GATC 2 cut(s) 57, 75
NlaIII CATG 3 cut(s) 15, 150, 431
NlaIV GGNNCC 2 cut(s) 301, 561
NspI RCATGY 1 cut(s) 15
NspV TTCGAA 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 469
PctI GAATGC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 131
Ple19I CGATCG 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 481
Psp5II RGGWCCY 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 301, 561
PspPI GGNCC 2 cut(s) 175, 559
PspPPI RGGWCCY 1 cut(s) 175
PsuI RGATCY 1 cut(s) 75
PvuI CGATCG 1 cut(s) 60
RgaI GCGATCGC 1 cut(s) 60
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SacI GAGCTC 1 cut(s) 481
SapI GCTCTTC 1 cut(s) 469
SaqAI TTAA 2 cut(s) 258, 318
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 2 cut(s) 57, 75
Sau96I GGNCC 2 cut(s) 175, 559
ScaI AGTACT 1 cut(s) 494
SduI GDGCHC 2 cut(s) 165, 481
SetI ASST 7 cut(s) 168, 180, 199, 210, 291, 438, 481
SfaAI GCGATCGC 1 cut(s) 60
SfaNI GCATC 1 cut(s) 178
SfuI TTCGAA 1 cut(s) 442
SgfI GCGATCGC 1 cut(s) 60
SinI GGWCC 2 cut(s) 175, 559
Sse9I AATT 4 cut(s) 135, 275, 338, 367
SsiI CCGC 2 cut(s) 129, 212
SstI GAGCTC 1 cut(s) 481
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 2 cut(s) 199, 438
TaqI TCGA 1 cut(s) 442
TasI AATT 4 cut(s) 135, 275, 338, 367
TatI WGTACW 1 cut(s) 492
TauI GCSGC 1 cut(s) 132
Tru1I TTAA 2 cut(s) 258, 318
Tru9I TTAA 2 cut(s) 258, 318
TspDTI ATGAA 5 cut(s) 24, 288, 414, 498, 511
VpaK11BI GGWCC 2 cut(s) 175, 559
XagI CCTNNNNNAGG 1 cut(s) 170
XapI RAATTY 3 cut(s) 135, 275, 338
XceI RCATGY 1 cut(s) 15
ZrmI AGTACT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.