Rmu_sc0004736.1_g000014

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004736.1
OG0031316
Physical Location & Seq
Reverse (-)
59075 .. 61821
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004736.1_g000014.1.cds

Sequence Viewer

Length: 924 bp
atgatatcagcatgtctgaccatccttcttgcttcatcttttctggtagtgaatgcgatcgctgtgattggggagatccttgtgtttcaatcagaccggactgattggttttgctctcttgttggtggcggcagaatttatcggacatggcctttgagggagcacctgtttgaggacctgcgatgggatgctcaacgtgtccgagaggttgcggtctttgaagatggggttctgtattttggttttgacgatgatattaaaaggattacaaatgaattcaaggaaaagctgggtgaaggagcctatggaactgtttttaaaggaagtctctcttctgaattctttgttgctgtcaaagtcctaaataattctaagggaaatggggaagagtttgtcaatgaagtgggagcaatgggtcatatccaccatgtcaacgtggttcgaatggttggcatttgtgctgatggatacagaagagctcttgtttatgagtacttccccaatggttcattacaagatttcatttcctcagcagacaataagaatggaatagccaaaggaattgaatatctccaccaaggatgtgatcaacgaatcctccattttgatatcaaacctcataatgttttgctagacctcaacttcactccaaaaatttctgattttggtttggccaagttatgttccaaggatcaaagtattgtgtcaatgactacggctaggggcaccatgggcaacattgcacctgaagttttctccagaaattttggaaatgtgtcttacaagtctgatgtctatatcttcggaatgttgttgctggagatcgttggaggtaggaagaatattcgtcccaccattaatgatgccagtgacatttactatccagagtggatctataatctcctagaaggaggacaagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

307

Amino Acids

34.44

Weight (kDa)

5.44

Isoelectric Point (pI)

29.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031316)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8511171.1_g000001 Rmu_sc0004736.1_g000014

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 725
AciI CCGC 2 cut(s) 129, 212
AclWI GGATC 3 cut(s) 70, 699, 899
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 5 cut(s) 135, 275, 338, 654, 763
AcuI CTGAAG 1 cut(s) 768
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 2 cut(s) 172, 184
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 4 cut(s) 89, 221, 280, 566
AluBI AGCT 2 cut(s) 289, 479
AluI AGCT 2 cut(s) 289, 479
Alw21I GWGCWC 2 cut(s) 165, 481
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 3 cut(s) 70, 699, 899
AoxI GGCC 2 cut(s) 149, 672
ApoI RAATTY 5 cut(s) 135, 275, 338, 654, 763
ArsI GACNNNNNNTTYG 2 cut(s) 136, 168
AseI ATTAAT 1 cut(s) 858
AsiSI GCGATCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 305
AsuII TTCGAA 1 cut(s) 442
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 728
BalI TGGCCA 1 cut(s) 674
BanI GGYRCC 1 cut(s) 725
BanII GRGCYC 1 cut(s) 481
Bbv12I GWGCWC 2 cut(s) 165, 481
BbvCI CCTCAGC 1 cut(s) 529
BccI CCATC 4 cut(s) 29, 177, 218, 458
BceAI ACGGC 1 cut(s) 732
BciVI GTATCC 1 cut(s) 461
BclI TGATCA 1 cut(s) 586
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 4 cut(s) 632, 720, 905, 922
BfuAI ACCTGC 1 cut(s) 186
BfuI GTATCC 1 cut(s) 461
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BmcAI AGTACT 1 cut(s) 494
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 301, 727
BmsI GCATC 2 cut(s) 178, 853
BpmI CTGGAG 2 cut(s) 742, 839
Bpu10I CCTNAGC 1 cut(s) 529
Bpu14I TTCGAA 1 cut(s) 442
BsaJI CCNNGG 3 cut(s) 577, 687, 729
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 582, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 184
Bse1I ACTGG 1 cut(s) 867
Bse3DI GCAATG 2 cut(s) 417, 738
BseDI CCNNGG 3 cut(s) 577, 687, 729
BseGI GGATG 3 cut(s) 21, 193, 587
BseLI CCNNNNNNNGG 2 cut(s) 172, 184
BseMI GCAATG 2 cut(s) 417, 738
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 1 cut(s) 867
BseSI GKGCMC 1 cut(s) 728
BseYI CCCAGC 1 cut(s) 289
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 151, 674
BshNI GGYRCC 1 cut(s) 725
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 165, 481
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 834
BslI CCNNNNNNNGG 2 cut(s) 172, 184
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 834
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 2 cut(s) 151, 674
Bsp119I TTCGAA 1 cut(s) 442
Bsp1286I GDGCHC 3 cut(s) 165, 481, 728
Bsp143I GATC 6 cut(s) 57, 75, 586, 691, 822, 891
Bsp19I CCATGG 1 cut(s) 729
BspACI CCGC 2 cut(s) 129, 212
BspANI GGCC 2 cut(s) 151, 674
BspCNI CTCAG 1 cut(s) 542
BspLI GGNNCC 2 cut(s) 301, 727
BspMI ACCTGC 1 cut(s) 186
BspPI GGATC 3 cut(s) 70, 699, 899
BspQI GCTCTTC 1 cut(s) 469
BspT104I TTCGAA 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 725
BsrDI GCAATG 2 cut(s) 417, 738
BsrI ACTGG 1 cut(s) 867
BssECI CCNNGG 3 cut(s) 577, 687, 729
BssMI GATC 6 cut(s) 57, 75, 586, 691, 822, 891
BssT1I CCWWGG 3 cut(s) 577, 687, 729
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 3 cut(s) 337, 381, 469
BstBI TTCGAA 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 372, 529
BstDSI CCRYGG 1 cut(s) 729
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 3 cut(s) 21, 193, 587
BstKTI GATC 6 cut(s) 60, 78, 589, 694, 825, 894
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 6 cut(s) 57, 75, 586, 691, 822, 891
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 732
BstNSI RCATGY 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 728
BstX2I RGATCY 2 cut(s) 75, 891
BstYI RGATCY 2 cut(s) 75, 891
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 2 cut(s) 151, 674
BtgI CCRYGG 1 cut(s) 729
BtgZI GCGATG 1 cut(s) 196
BtsCI GGATG 3 cut(s) 21, 193, 587
BtsIMutI CAGTG 1 cut(s) 874
BveI ACCTGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 493
CviAII CATG 4 cut(s) 12, 147, 428, 730
CviJI RGCY 7 cut(s) 151, 289, 302, 479, 554, 674, 719
CviKI_1 RGCY 7 cut(s) 151, 289, 302, 479, 554, 674, 719
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 2 cut(s) 372, 529
DpnI GATC 6 cut(s) 59, 77, 588, 693, 824, 893
DpnII GATC 6 cut(s) 57, 75, 586, 691, 822, 891
DraI TTTAAA 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 3 cut(s) 337, 381, 469
EarI CTCTTC 3 cut(s) 337, 381, 469
Ecl136II GAGCTC 1 cut(s) 479
Eco130I CCWWGG 3 cut(s) 577, 687, 729
Eco24I GRGCYC 1 cut(s) 481
Eco32I GATATC 2 cut(s) 6, 610
Eco47I GGWCC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 768
EcoICRI GAGCTC 1 cut(s) 479
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 175
EcoRI GAATTC 2 cut(s) 275, 338
EcoRV GATATC 2 cut(s) 6, 610
EcoT14I CCWWGG 3 cut(s) 577, 687, 729
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 3 cut(s) 577, 687, 729
FaeI CATG 4 cut(s) 15, 150, 431, 733
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FaqI GGGAC 1 cut(s) 834
FatI CATG 4 cut(s) 11, 146, 427, 729
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 3 cut(s) 8, 200, 594
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 1 cut(s) 130
FspBI CTAG 4 cut(s) 632, 720, 905, 922
GluI GCNGC 1 cut(s) 130
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 2 cut(s) 742, 839
HaeIII GGCC 2 cut(s) 151, 674
HapII CCGG 1 cut(s) 97
Hin1II CATG 4 cut(s) 15, 150, 431, 733
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 1 cut(s) 594
HpaII CCGG 1 cut(s) 97
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 8 cut(s) 18, 94, 144, 203, 337, 661, 790, 806
Hpy188III TCNNGA 2 cut(s) 759, 884
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 3 cut(s) 35, 290, 902
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 2 cut(s) 196, 435
HpyCH4V TGCA 1 cut(s) 743
HpyF10VI GCNNNNNNNGC 1 cut(s) 732
HpyF3I CTNAG 2 cut(s) 372, 529
HpySE526I ACGT 2 cut(s) 196, 435
Hsp92II CATG 4 cut(s) 15, 150, 431, 733
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 6 cut(s) 57, 75, 586, 691, 822, 891
LguI GCTCTTC 1 cut(s) 469
LmnI GCTCC 3 cut(s) 160, 299, 407
LweI GCATC 2 cut(s) 178, 853
MaeI CTAG 4 cut(s) 632, 720, 905, 922
MaeII ACGT 2 cut(s) 196, 435
MaeIII GTNAC 1 cut(s) 869
MalI GATC 6 cut(s) 59, 77, 588, 693, 824, 893
MboI GATC 6 cut(s) 57, 75, 586, 691, 822, 891
MboII GAAGA 6 cut(s) 233, 324, 398, 486, 793, 850
MflI RGATCY 2 cut(s) 75, 891
MhlI GDGCHC 3 cut(s) 165, 481, 728
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 7 cut(s) 135, 275, 338, 367, 561, 654, 763
MluNI TGGCCA 1 cut(s) 674
MmeI TCCRAC 1 cut(s) 808
MnlI CCTC 9 cut(s) 150, 166, 199, 538, 608, 627, 647, 824, 905
Mox20I TGGCCA 1 cut(s) 674
MscI TGGCCA 1 cut(s) 674
MseI TTAA 3 cut(s) 258, 318, 858
Msp20I TGGCCA 1 cut(s) 674
MspI CCGG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 732
NcoI CCATGG 1 cut(s) 729
NdeII GATC 6 cut(s) 57, 75, 586, 691, 822, 891
NlaIII CATG 4 cut(s) 15, 150, 431, 733
NlaIV GGNNCC 2 cut(s) 301, 727
NmuCI GTSAC 1 cut(s) 869
NspI RCATGY 1 cut(s) 15
NspV TTCGAA 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 469
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 594
PkrI GCNGC 1 cut(s) 131
Ple19I CGATCG 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 175
PshBI ATTAAT 1 cut(s) 858
Psp124BI GAGCTC 1 cut(s) 481
Psp5II RGGWCCY 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 301, 727
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PsuI RGATCY 2 cut(s) 75, 891
PvuI CGATCG 1 cut(s) 60
RgaI GCGATCGC 1 cut(s) 60
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SacI GAGCTC 1 cut(s) 481
SapI GCTCTTC 1 cut(s) 469
SaqAI TTAA 3 cut(s) 258, 318, 858
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 6 cut(s) 57, 75, 586, 691, 822, 891
Sau96I GGNCC 1 cut(s) 175
ScaI AGTACT 1 cut(s) 494
SduI GDGCHC 3 cut(s) 165, 481, 728
SfaAI GCGATCGC 1 cut(s) 60
SfaNI GCATC 2 cut(s) 178, 853
SfuI TTCGAA 1 cut(s) 442
SgfI GCGATCGC 1 cut(s) 60
SinI GGWCC 1 cut(s) 175
Sse9I AATT 7 cut(s) 135, 275, 338, 367, 561, 654, 763
SsiI CCGC 2 cut(s) 129, 212
SspI AATATT 1 cut(s) 844
SspMI CTAG 4 cut(s) 632, 720, 905, 922
SstI GAGCTC 1 cut(s) 481
StyI CCWWGG 3 cut(s) 577, 687, 729
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 2 cut(s) 199, 438
TaqI TCGA 1 cut(s) 442
TasI AATT 7 cut(s) 135, 275, 338, 367, 561, 654, 763
TatI WGTACW 1 cut(s) 492
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 1 cut(s) 594
Tru1I TTAA 3 cut(s) 258, 318, 858
Tru9I TTAA 3 cut(s) 258, 318, 858
TscAI CASTG 1 cut(s) 874
TseFI GTSAC 1 cut(s) 869
Tsp45I GTSAC 1 cut(s) 869
TspDTI ATGAA 5 cut(s) 24, 288, 414, 498, 511
TspRI CASTG 1 cut(s) 874
VpaK11BI GGWCC 1 cut(s) 175
VspI ATTAAT 1 cut(s) 858
XagI CCTNNNNNAGG 1 cut(s) 170
XapI RAATTY 5 cut(s) 135, 275, 338, 654, 763
XceI RCATGY 1 cut(s) 15
XspI CTAG 4 cut(s) 632, 720, 905, 922
ZrmI AGTACT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.