Rmu_co8513405.1_g000001

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8513405.1
OG0031362
Physical Location & Seq
Reverse (-)
1 .. 1817
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8513405.1_g000001.1.cds

Sequence Viewer

Length: 760 bp
atgggtatcgatttggtcgccggcggcaacagcaagaacaccaagcgcacatcgcctggggctgaggatatctaccgcaagctcacagtcaagctctatgatttcatccacccaaggacgaagagtcatttcagcaaggtgattcgtcacaagctttgcatgagcaaggtcactgctctcaggttcaccgaaagggcaaggggtcgcattgagaaggctggtggagagagcttcagtttcgaccaattggctgttagagctccgcttgccgagaacacgatgcttcccagaggaccaaagaatggccgtgaagctgtgaagcatttcggtccaccacctggtgtcccacacagccacaccaagccatatgtgcgatcaaagggcaggaaattcgagaatgccagaggaaaaagcaacagccgtggtttccgtgtcgagtacgccctcaaagccgtgcgtaaggctaacggcgccgtcggcgtccgtggcaccgacaccatcgttctcggcgtcgagaagaagtccaccgctaagcttcacgactcgagatcagtgaggaagattgtgaacctggacaatcacattgctgtaccctgtgctggcctcaaagcagatgctcgtgtcctgataaacaaggcgaggattgaatgtgaaagccataggcttactgttgaggatccagtaacagttgagtatataacacattacattgctggtcttcagcaaaagtacacgcagagtggtggtgtgaggccatttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18

Protein Analysis

253

Amino Acids

28.02

Weight (kDa)

10.36

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031362)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8513405.1_g000001 Rmu_sc0006198.1_g000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 470, 488
AccB7I CCANNNNNTGG 2 cut(s) 302, 338
AciI CCGC 4 cut(s) 24, 76, 263, 528
AclWI GGATC 2 cut(s) 671, 684
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 2 cut(s) 217, 704
AcyI GRCGYC 3 cut(s) 471, 480, 510
AdeI CACNNNGTG 1 cut(s) 341
AfaI GTAC 3 cut(s) 440, 591, 731
AfiI CCNNNNNNNGG 3 cut(s) 302, 338, 599
AgsI TTSAA 1 cut(s) 647
AhdI GACNNNNNGTC 1 cut(s) 123
AjnI CCWGG 3 cut(s) 55, 337, 570
AluBI AGCT 7 cut(s) 82, 94, 154, 231, 260, 314, 535
AluI AGCT 7 cut(s) 82, 94, 154, 231, 260, 314, 535
Alw21I GWGCWC 1 cut(s) 262
AlwI GGATC 2 cut(s) 671, 684
Ama87I CYCGRG 1 cut(s) 544
AoxI GGCC 3 cut(s) 304, 601, 752
ApoI RAATTY 1 cut(s) 389
Asp700I GAANNNNTTC 1 cut(s) 323
AspLEI GCGC 2 cut(s) 48, 473
AspS9I GGNCC 2 cut(s) 293, 329
AsuHPI GGTGA 2 cut(s) 151, 178
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 2 cut(s) 293, 329
BamHI GGATCC 1 cut(s) 676
BanI GGYRCC 2 cut(s) 470, 488
BanII GRGCYC 1 cut(s) 262
BauI CACGAG 1 cut(s) 618
BbsI GAAGAC 1 cut(s) 710
Bbv12I GWGCWC 1 cut(s) 262
BbvCI CCTCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 506
BceAI ACGGC 5 cut(s) 291, 405, 437, 458, 484
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BciT130I CCWGG 3 cut(s) 57, 339, 572
BfoI RGCGCY 1 cut(s) 474
BisI GCNGC 1 cut(s) 25
BlpI GCTNAGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 3 cut(s) 57, 339, 572
Bme18I GGWCC 2 cut(s) 293, 329
BmeRI GACNNNNNGTC 1 cut(s) 123
BmeT110I CYCGRG 1 cut(s) 544
BmgT120I GGNCC 2 cut(s) 293, 329
BmiI GGNNCC 3 cut(s) 472, 490, 678
BmrFI CCNGG 3 cut(s) 57, 339, 572
BmsI GCATC 2 cut(s) 270, 604
BpiI GAAGAC 1 cut(s) 710
Bpu10I CCTNAGC 1 cut(s) 63
Bpu1102I GCTNAGC 1 cut(s) 531
Bsa29I ATCGAT 1 cut(s) 9
BsaHI GRCGYC 3 cut(s) 471, 480, 510
BsaJI CCNNGG 4 cut(s) 56, 113, 421, 484
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 338, 599
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 680
Bse3DI GCAATG 2 cut(s) 582, 708
BseBI CCWGG 3 cut(s) 57, 339, 572
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 4 cut(s) 56, 113, 421, 484
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 3 cut(s) 302, 338, 599
BseMI GCAATG 2 cut(s) 582, 708
BseMII CTCAG 2 cut(s) 54, 193
BseNI ACTGG 1 cut(s) 680
BshFI GGCC 3 cut(s) 306, 603, 754
BshNI GGYRCC 2 cut(s) 470, 488
BshVI ATCGAT 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 3 cut(s) 302, 338, 599
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 3 cut(s) 306, 603, 754
BsoBI CYCGRG 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 3 cut(s) 374, 548, 676
Bsp1720I GCTNAGC 1 cut(s) 531
BspACI CCGC 4 cut(s) 24, 76, 263, 528
BspANI GGCC 3 cut(s) 306, 603, 754
BspCNI CTCAG 2 cut(s) 55, 192
BspDI ATCGAT 1 cut(s) 9
BspLI GGNNCC 3 cut(s) 472, 490, 678
BspPI GGATC 2 cut(s) 671, 684
BspT107I GGYRCC 2 cut(s) 470, 488
BsrDI GCAATG 2 cut(s) 582, 708
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 1 cut(s) 680
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 4 cut(s) 56, 113, 421, 484
BssMI GATC 3 cut(s) 374, 548, 676
BssNI GRCGYC 3 cut(s) 471, 480, 510
BssSI CACGAG 1 cut(s) 618
BssT1I CCWWGG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 618
Bst2UI CCWGG 3 cut(s) 57, 339, 572
Bst4CI ACNGT 3 cut(s) 88, 670, 688
Bst6I CTCTTC 1 cut(s) 116
BstACI GRCGYC 3 cut(s) 471, 480, 510
BstC8I GCNNGC 4 cut(s) 22, 80, 267, 601
BstDEI CTNAG 3 cut(s) 63, 179, 531
BstDSI CCRYGG 2 cut(s) 421, 484
BstF5I GGATG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 2 cut(s) 48, 473
BstKTI GATC 3 cut(s) 377, 551, 679
BstMBI GATC 3 cut(s) 374, 548, 676
BstMWI GCNNNNNNNGC 9 cut(s) 30, 52, 257, 266, 370, 449, 470, 477, 486
BstNI CCWGG 3 cut(s) 57, 339, 572
BstSCI CCNGG 3 cut(s) 55, 337, 570
BstV2I GAAGAC 1 cut(s) 710
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 3 cut(s) 306, 603, 754
BsuTUI ATCGAT 1 cut(s) 9
BtgI CCRYGG 2 cut(s) 421, 484
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 171, 558
Cac8I GCNNGC 4 cut(s) 22, 80, 267, 601
CfoI GCGC 2 cut(s) 48, 473
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 293, 329
ClaI ATCGAT 1 cut(s) 9
CseI GACGC 2 cut(s) 469, 499
CsiI ACCWGGT 1 cut(s) 337
Csp6I GTAC 3 cut(s) 439, 590, 730
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviAII CATG 1 cut(s) 160
CviQI GTAC 3 cut(s) 439, 590, 730
DdeI CTNAG 3 cut(s) 63, 179, 531
DinI GGCGCC 1 cut(s) 472
DpnI GATC 3 cut(s) 376, 550, 678
DpnII GATC 3 cut(s) 374, 548, 676
DraIII CACNNNGTG 1 cut(s) 341
DriI GACNNNNNGTC 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 116
Eam1105I GACNNNNNGTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 262
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 2 cut(s) 293, 329
Eco53kI GAGCTC 1 cut(s) 260
Eco57I CTGAAG 2 cut(s) 217, 704
Eco88I CYCGRG 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 55, 337, 570
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 262
EgeI GGCGCC 1 cut(s) 472
EheI GGCGCC 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 1 cut(s) 163
FaiI YATR 7 cut(s) 99, 161, 367, 369, 660, 696, 698
FaqI GGGAC 1 cut(s) 329
FatI CATG 1 cut(s) 159
FauNDI CATATG 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 1 cut(s) 25
GlaI GCGC 2 cut(s) 47, 472
GluI GCNGC 1 cut(s) 25
HaeII RGCGCY 1 cut(s) 474
HaeIII GGCC 3 cut(s) 306, 603, 754
HapII CCGG 1 cut(s) 21
HgaI GACGC 2 cut(s) 469, 499
HhaI GCGC 2 cut(s) 48, 473
Hin1I GRCGYC 3 cut(s) 471, 480, 510
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 2 cut(s) 46, 471
HinP1I GCGC 2 cut(s) 46, 471
HindIII AAGCTT 2 cut(s) 152, 533
HinfI GANTC 3 cut(s) 124, 142, 542
HpaII CCGG 1 cut(s) 21
HphI GGTGA 2 cut(s) 151, 178
Hpy166II GTNNAC 5 cut(s) 186, 332, 525, 568, 732
Hpy188III TCNNGA 5 cut(s) 394, 514, 539, 546, 625
Hpy8I GTNNAC 5 cut(s) 186, 332, 525, 568, 732
Hpy99I CGWCG 2 cut(s) 479, 515
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 3 cut(s) 88, 670, 688
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 9 cut(s) 30, 52, 257, 266, 370, 449, 470, 477, 486
HpyF3I CTNAG 3 cut(s) 63, 179, 531
Hsp92I GRCGYC 3 cut(s) 471, 480, 510
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 2 cut(s) 46, 471
KasI GGCGCC 1 cut(s) 470
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 374, 548, 676
LmnI GCTCC 1 cut(s) 265
LweI GCATC 2 cut(s) 270, 604
MabI ACCWGGT 1 cut(s) 337
MaeIII GTNAC 3 cut(s) 146, 169, 682
MalI GATC 3 cut(s) 376, 550, 678
MboI GATC 3 cut(s) 374, 548, 676
MboII GAAGA 4 cut(s) 133, 529, 571, 710
MfeI CAATTG 1 cut(s) 245
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 2 cut(s) 245, 389
Mly113I GGCGCC 1 cut(s) 471
MlyI GAGTC 2 cut(s) 133, 536
MnlI CCTC 9 cut(s) 58, 284, 398, 455, 549, 614, 633, 667, 744
MreI CGCCGGCG 1 cut(s) 20
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 323
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 3 cut(s) 57, 339, 572
MunI CAATTG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 3 cut(s) 57, 339, 572
MwoI GCNNNNNNNGC 9 cut(s) 30, 52, 257, 266, 370, 449, 470, 477, 486
NaeI GCCGGC 1 cut(s) 22
NarI GGCGCC 1 cut(s) 471
NdeI CATATG 1 cut(s) 367
NdeII GATC 3 cut(s) 374, 548, 676
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 3 cut(s) 472, 490, 678
NmeAIII GCCGAG 2 cut(s) 295, 486
NmuCI GTSAC 2 cut(s) 146, 169
PaeR7I CTCGAG 1 cut(s) 544
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PctI GAATGC 1 cut(s) 403
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 142
PflMI CCANNNNNTGG 2 cut(s) 302, 338
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 2 cut(s) 132, 536
PluTI GGCGCC 1 cut(s) 474
PpsI GAGTC 2 cut(s) 132, 536
Psp124BI GAGCTC 1 cut(s) 262
Psp6I CCWGG 3 cut(s) 55, 337, 570
PspGI CCWGG 3 cut(s) 55, 337, 570
PspN4I GGNNCC 3 cut(s) 472, 490, 678
PspPI GGNCC 2 cut(s) 293, 329
PsuI RGATCY 1 cut(s) 676
RsaI GTAC 3 cut(s) 440, 591, 731
RsaNI GTAC 3 cut(s) 439, 590, 730
SacI GAGCTC 1 cut(s) 262
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 3 cut(s) 374, 548, 676
Sau96I GGNCC 2 cut(s) 293, 329
SchI GAGTC 2 cut(s) 133, 536
ScrFI CCNGG 3 cut(s) 57, 339, 572
SduI GDGCHC 1 cut(s) 262
SexAI ACCWGGT 1 cut(s) 337
SfaNI GCATC 2 cut(s) 270, 604
SfoI GGCGCC 1 cut(s) 472
Sfr274I CTCGAG 1 cut(s) 544
SgrAI CRCCGGYG 1 cut(s) 20
SinI GGWCC 2 cut(s) 293, 329
SlaI CTCGAG 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 2 cut(s) 245, 389
SsiI CCGC 4 cut(s) 24, 76, 263, 528
SspDI GGCGCC 1 cut(s) 470
SstI GAGCTC 1 cut(s) 262
StyD4I CCNGG 3 cut(s) 55, 337, 570
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 3 cut(s) 88, 670, 688
TaqI TCGA 6 cut(s) 9, 240, 393, 435, 513, 545
TaqII GACCGA 1 cut(s) 317
TasI AATT 2 cut(s) 245, 389
TatI WGTACW 1 cut(s) 729
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 1 cut(s) 142
TscAI CASTG 2 cut(s) 178, 558
TseFI GTSAC 2 cut(s) 146, 169
Tsp45I GTSAC 2 cut(s) 146, 169
TspDTI ATGAA 1 cut(s) 94
TspGWI ACGGA 2 cut(s) 419, 473
TspRI CASTG 2 cut(s) 178, 558
Van91I CCANNNNNTGG 2 cut(s) 302, 338
VpaK11BI GGWCC 2 cut(s) 293, 329
XapI RAATTY 1 cut(s) 389
XhoI CTCGAG 1 cut(s) 544
XmnI GAANNNNTTC 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.