Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000015.1

Orthogroup ID

OG0031030

Physical Location & Seq

Genomic Coordinates Reverse (-)

23073 .. 23339

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000015.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgcatacagagaatgggagcgaagtgatgtactacttgctgcctaagttcaccatgagcgacctagaagctgccacggaggacttcttgccggagaacattgtttcggcaagtggagagaaatttcccaatgtggtgtacagaggcaagctcaaagacggccgttgggtggctgtcaagcgtttcacgtactcagcttggcctgattcgtaccaatttcttgtatggataaatttgcttaatttcctctttttgtttcgtgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

88

Amino Acids

10.35

Weight (kDa)

5.71

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031030)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000015.1_g000007
rosa_samantha	Rh5AG443200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	122, 232
AfaI	GTAC	4 cut(s)	32, 140, 191, 212
AfiI	CCNNNNNNNGG	1 cut(s)	169
AluBI	AGCT	3 cut(s)	71, 151, 197
AluI	AGCT	3 cut(s)	71, 151, 197
AoxI	GGCC	2 cut(s)	160, 200
ApeKI	GCWGC	2 cut(s)	40, 71
ApoI	RAATTY	2 cut(s)	122, 232
AsuHPI	GGTGA	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	27, 58
BceAI	ACGGC	2 cut(s)	147, 175
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	2 cut(s)	41, 72
BlsI	GCNGC	2 cut(s)	42, 73
BplI	GAGNNNNNCTC	2 cut(s)	135, 167
BsaAI	YACGTR	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	207
BseX3I	CGGCCG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	27, 58
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	2 cut(s)	162, 202
BsiEI	CGRYCG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	169
BsnI	GGCC	2 cut(s)	162, 202
Bsp1407I	TGTACA	1 cut(s)	138
BspANI	GGCC	2 cut(s)	162, 202
BspCNI	CTCAG	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	45, 193
BstDSI	CCRYGG	1 cut(s)	75
BstMCI	CGRYCG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	27, 58
BstZI	CGGCCG	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	162, 202
BtgI	CCRYGG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	149
Csp6I	GTAC	4 cut(s)	31, 139, 190, 211
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	6 cut(s)	71, 151, 162, 173, 197, 202
CviKI_1	RGCY	6 cut(s)	71, 151, 162, 173, 197, 202
CviQI	GTAC	4 cut(s)	31, 139, 190, 211
DdeI	CTNAG	2 cut(s)	45, 193
EaeI	YGGCCR	1 cut(s)	160
EagI	CGGCCG	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	58
FaiI	YATR	3 cut(s)	6, 56, 226
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	41, 72
Fsp4HI	GCNGC	2 cut(s)	41, 72
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	2 cut(s)	41, 72
HaeIII	GGCC	2 cut(s)	162, 202
HapII	CCGG	1 cut(s)	92
Hin1II	CATG	1 cut(s)	58
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	51, 139
Hpy8I	GTNNAC	2 cut(s)	51, 139
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	45, 193
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	2 cut(s)	105, 216
Lsp1109I	GCAGC	2 cut(s)	27, 58
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	188
MluCI	AATT	4 cut(s)	122, 215, 232, 241
MnlI	CCTC	3 cut(s)	73, 137, 257
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	240
MspI	CCGG	1 cut(s)	92
NlaIII	CATG	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	42, 73
Ppu21I	YACGTR	1 cut(s)	189
RsaI	GTAC	4 cut(s)	32, 140, 191, 212
RsaNI	GTAC	4 cut(s)	31, 139, 190, 211
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	41, 72
SetI	ASST	5 cut(s)	66, 73, 153, 191, 199
Sse9I	AATT	4 cut(s)	122, 215, 232, 241
SspMI	CTAG	1 cut(s)	65
TaiI	ACGT	1 cut(s)	191
TasI	AATT	4 cut(s)	122, 215, 232, 241
TatI	WGTACW	2 cut(s)	30, 138
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	2 cut(s)	40, 71
TspGWI	ACGGA	1 cut(s)	92
XapI	RAATTY	2 cut(s)	122, 232
XspI	CTAG	1 cut(s)	65
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.